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lib/Bio/Chado/Schema/Result/Cv/Cvterm.pm  view on Meta::CPAN

  is_nullable: 0

Boolean 0=false,1=true; see
GO documentation for details of obsoletion. Note that two terms with
different primary dbxrefs may exist if one is obsolete.

=head2 is_relationshiptype

  data_type: 'integer'
  default_value: 0
  is_nullable: 0

Boolean
0=false,1=true relations or relationship types (also known as Typedefs
in OBO format, or as properties or slots) form a cv/ontology in
themselves. We use this flag to indicate whether this cvterm is an
actual term/class/universal or a relation. Relations may be drawn from
the OBO Relations ontology, but are not exclusively drawn from there.

=cut

__PACKAGE__->add_columns(
  "cvterm_id",
  {
    data_type         => "integer",
    is_auto_increment => 1,
    is_nullable       => 0,
    sequence          => "cvterm_cvterm_id_seq",
  },
  "cv_id",
  { data_type => "integer", is_foreign_key => 1, is_nullable => 0 },
  "name",
  { data_type => "varchar", is_nullable => 0, size => 1024 },
  "definition",
  { data_type => "text", is_nullable => 1 },
  "dbxref_id",
  { data_type => "integer", is_foreign_key => 1, is_nullable => 0 },
  "is_obsolete",
  { data_type => "integer", default_value => 0, is_nullable => 0 },
  "is_relationshiptype",
  { data_type => "integer", default_value => 0, is_nullable => 0 },
);
__PACKAGE__->set_primary_key("cvterm_id");
__PACKAGE__->add_unique_constraint("cvterm_c2", ["dbxref_id"]);
__PACKAGE__->add_unique_constraint("cvterm_c1", ["name", "cv_id", "is_obsolete"]);

=head1 RELATIONS

=head2 acquisitionprops

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Mage::Acquisitionprop>

=cut

__PACKAGE__->has_many(
  "acquisitionprops",
  "Bio::Chado::Schema::Result::Mage::Acquisitionprop",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 acquisition_relationships

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Mage::AcquisitionRelationship>

=cut

__PACKAGE__->has_many(
  "acquisition_relationships",
  "Bio::Chado::Schema::Result::Mage::AcquisitionRelationship",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 analysisfeatureprops

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Companalysis::Analysisfeatureprop>

=cut

__PACKAGE__->has_many(
  "analysisfeatureprops",
  "Bio::Chado::Schema::Result::Companalysis::Analysisfeatureprop",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 analysisprops

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Companalysis::Analysisprop>

=cut

__PACKAGE__->has_many(
  "analysisprops",
  "Bio::Chado::Schema::Result::Companalysis::Analysisprop",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 arraydesign_platformtypes

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Mage::Arraydesign>

=cut

__PACKAGE__->has_many(
  "arraydesign_platformtypes",
  "Bio::Chado::Schema::Result::Mage::Arraydesign",
  { "foreign.platformtype_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 arraydesign_substratetypes

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Mage::Arraydesign>

=cut

__PACKAGE__->has_many(
  "arraydesign_substratetypes",
  "Bio::Chado::Schema::Result::Mage::Arraydesign",
  { "foreign.substratetype_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 arraydesignprops

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Mage::Arraydesignprop>

=cut

__PACKAGE__->has_many(
  "arraydesignprops",
  "Bio::Chado::Schema::Result::Mage::Arraydesignprop",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 assayprops

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Mage::Assayprop>

=cut

__PACKAGE__->has_many(
  "assayprops",
  "Bio::Chado::Schema::Result::Mage::Assayprop",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 biomaterialprops

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Mage::Biomaterialprop>

=cut

__PACKAGE__->has_many(
  "biomaterialprops",
  "Bio::Chado::Schema::Result::Mage::Biomaterialprop",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 biomaterial_relationships

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Mage::BiomaterialRelationship>

=cut

__PACKAGE__->has_many(
  "biomaterial_relationships",
  "Bio::Chado::Schema::Result::Mage::BiomaterialRelationship",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 biomaterial_treatments

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Mage::BiomaterialTreatment>

=cut

__PACKAGE__->has_many(
  "biomaterial_treatments",
  "Bio::Chado::Schema::Result::Mage::BiomaterialTreatment",
  { "foreign.unittype_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 cell_line_cvterms

Type: has_many

Related object: L<Bio::Chado::Schema::Result::CellLine::CellLineCvterm>

=cut

__PACKAGE__->has_many(
  "cell_line_cvterms",
  "Bio::Chado::Schema::Result::CellLine::CellLineCvterm",
  { "foreign.cvterm_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 cell_line_cvtermprops

Type: has_many

Related object: L<Bio::Chado::Schema::Result::CellLine::CellLineCvtermprop>

=cut

__PACKAGE__->has_many(
  "cell_line_cvtermprops",
  "Bio::Chado::Schema::Result::CellLine::CellLineCvtermprop",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 cell_lineprops

Type: has_many

Related object: L<Bio::Chado::Schema::Result::CellLine::CellLineprop>

=cut

__PACKAGE__->has_many(
  "cell_lineprops",
  "Bio::Chado::Schema::Result::CellLine::CellLineprop",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 cell_line_relationships

Type: has_many

Related object: L<Bio::Chado::Schema::Result::CellLine::CellLineRelationship>

=cut

__PACKAGE__->has_many(
  "cell_line_relationships",
  "Bio::Chado::Schema::Result::CellLine::CellLineRelationship",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 chadoprops

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Cv::Chadoprop>

=cut

__PACKAGE__->has_many(
  "chadoprops",
  "Bio::Chado::Schema::Result::Cv::Chadoprop",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 contacts

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Contact::Contact>

=cut

__PACKAGE__->has_many(
  "contacts",
  "Bio::Chado::Schema::Result::Contact::Contact",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 contact_relationships

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Contact::ContactRelationship>

=cut

__PACKAGE__->has_many(
  "contact_relationships",
  "Bio::Chado::Schema::Result::Contact::ContactRelationship",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 controls

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Mage::Control>

=cut

__PACKAGE__->has_many(
  "controls",
  "Bio::Chado::Schema::Result::Mage::Control",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 cvprops

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Cv::Cvprop>

=cut

__PACKAGE__->has_many(
  "cvprops",
  "Bio::Chado::Schema::Result::Cv::Cvprop",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 cv

Type: belongs_to

Related object: L<Bio::Chado::Schema::Result::Cv::Cv>

=cut

__PACKAGE__->belongs_to(
  "cv",
  "Bio::Chado::Schema::Result::Cv::Cv",
  { cv_id => "cv_id" },
  {
    cascade_copy   => 0,
    cascade_delete => 0,
    is_deferrable  => 1,
    on_delete      => "CASCADE",
    on_update      => "CASCADE",
  },
);

=head2 dbxref

Type: belongs_to

Related object: L<Bio::Chado::Schema::Result::General::Dbxref>

=cut

__PACKAGE__->belongs_to(
  "dbxref",
  "Bio::Chado::Schema::Result::General::Dbxref",
  { dbxref_id => "dbxref_id" },
  {
    cascade_copy   => 0,
    cascade_delete => 0,
    is_deferrable  => 1,
    on_delete      => "CASCADE",
    on_update      => "CASCADE",
  },
);

=head2 cvterm_dbxrefs

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Cv::CvtermDbxref>

=cut

__PACKAGE__->has_many(
  "cvterm_dbxrefs",
  "Bio::Chado::Schema::Result::Cv::CvtermDbxref",
  { "foreign.cvterm_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 cvtermpath_types

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Cv::Cvtermpath>

=cut

__PACKAGE__->has_many(
  "cvtermpath_types",
  "Bio::Chado::Schema::Result::Cv::Cvtermpath",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 cvtermpath_objects

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Cv::Cvtermpath>

=cut

__PACKAGE__->has_many(
  "cvtermpath_objects",
  "Bio::Chado::Schema::Result::Cv::Cvtermpath",
  { "foreign.object_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 cvtermpath_subjects

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Cv::Cvtermpath>

=cut

__PACKAGE__->has_many(
  "cvtermpath_subjects",
  "Bio::Chado::Schema::Result::Cv::Cvtermpath",
  { "foreign.subject_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 cvtermprop_types

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Cv::Cvtermprop>

=cut

__PACKAGE__->has_many(
  "cvtermprop_types",
  "Bio::Chado::Schema::Result::Cv::Cvtermprop",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 cvtermprops

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Cv::Cvtermprop>

=cut

__PACKAGE__->has_many(
  "cvtermprops",
  "Bio::Chado::Schema::Result::Cv::Cvtermprop",
  { "foreign.cvterm_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 cvterm_relationship_types

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Cv::CvtermRelationship>

=cut

__PACKAGE__->has_many(
  "cvterm_relationship_types",
  "Bio::Chado::Schema::Result::Cv::CvtermRelationship",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 cvterm_relationship_objects

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Cv::CvtermRelationship>

=cut

__PACKAGE__->has_many(
  "cvterm_relationship_objects",
  "Bio::Chado::Schema::Result::Cv::CvtermRelationship",
  { "foreign.object_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 cvterm_relationship_subjects

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Cv::CvtermRelationship>

=cut

__PACKAGE__->has_many(
  "cvterm_relationship_subjects",
  "Bio::Chado::Schema::Result::Cv::CvtermRelationship",
  { "foreign.subject_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 cvtermsynonym_types

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Cv::Cvtermsynonym>

=cut

__PACKAGE__->has_many(
  "cvtermsynonym_types",
  "Bio::Chado::Schema::Result::Cv::Cvtermsynonym",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 cvtermsynonyms

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Cv::Cvtermsynonym>

=cut

__PACKAGE__->has_many(
  "cvtermsynonyms",
  "Bio::Chado::Schema::Result::Cv::Cvtermsynonym",
  { "foreign.cvterm_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 dbxrefprops

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Cv::Dbxrefprop>

=cut

__PACKAGE__->has_many(
  "dbxrefprops",
  "Bio::Chado::Schema::Result::Cv::Dbxrefprop",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 elements

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Mage::Element>

=cut

__PACKAGE__->has_many(
  "elements",
  "Bio::Chado::Schema::Result::Mage::Element",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 element_relationships

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Mage::ElementRelationship>

=cut

__PACKAGE__->has_many(
  "element_relationships",
  "Bio::Chado::Schema::Result::Mage::ElementRelationship",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 elementresult_relationships

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Mage::ElementresultRelationship>

=cut

__PACKAGE__->has_many(
  "elementresult_relationships",
  "Bio::Chado::Schema::Result::Mage::ElementresultRelationship",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 environment_cvterms

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Genetic::EnvironmentCvterm>

=cut

__PACKAGE__->has_many(
  "environment_cvterms",
  "Bio::Chado::Schema::Result::Genetic::EnvironmentCvterm",
  { "foreign.cvterm_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 expression_cvterm_cvterms

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Expression::ExpressionCvterm>

=cut

__PACKAGE__->has_many(
  "expression_cvterm_cvterms",
  "Bio::Chado::Schema::Result::Expression::ExpressionCvterm",
  { "foreign.cvterm_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 expression_cvterm_cvterm_types

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Expression::ExpressionCvterm>

=cut

__PACKAGE__->has_many(
  "expression_cvterm_cvterm_types",
  "Bio::Chado::Schema::Result::Expression::ExpressionCvterm",
  { "foreign.cvterm_type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 expression_cvtermprops

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Expression::ExpressionCvtermprop>

=cut

__PACKAGE__->has_many(
  "expression_cvtermprops",
  "Bio::Chado::Schema::Result::Expression::ExpressionCvtermprop",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 expressionprops

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Expression::Expressionprop>

=cut

__PACKAGE__->has_many(
  "expressionprops",
  "Bio::Chado::Schema::Result::Expression::Expressionprop",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 features

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Sequence::Feature>

=cut

__PACKAGE__->has_many(
  "features",
  "Bio::Chado::Schema::Result::Sequence::Feature",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 feature_cvterms

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Sequence::FeatureCvterm>

=cut

__PACKAGE__->has_many(
  "feature_cvterms",
  "Bio::Chado::Schema::Result::Sequence::FeatureCvterm",
  { "foreign.cvterm_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 feature_cvtermprops

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Sequence::FeatureCvtermprop>

=cut

__PACKAGE__->has_many(
  "feature_cvtermprops",
  "Bio::Chado::Schema::Result::Sequence::FeatureCvtermprop",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 feature_expressionprops

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Expression::FeatureExpressionprop>

=cut

__PACKAGE__->has_many(
  "feature_expressionprops",
  "Bio::Chado::Schema::Result::Expression::FeatureExpressionprop",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 feature_genotypes

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Genetic::FeatureGenotype>

=cut

__PACKAGE__->has_many(
  "feature_genotypes",
  "Bio::Chado::Schema::Result::Genetic::FeatureGenotype",
  { "foreign.cvterm_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 featuremaps

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Map::Featuremap>

=cut

__PACKAGE__->has_many(
  "featuremaps",
  "Bio::Chado::Schema::Result::Map::Featuremap",
  { "foreign.unittype_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 featureprops

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Sequence::Featureprop>

=cut

__PACKAGE__->has_many(
  "featureprops",
  "Bio::Chado::Schema::Result::Sequence::Featureprop",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 feature_pubprops

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Sequence::FeaturePubprop>

=cut

__PACKAGE__->has_many(
  "feature_pubprops",
  "Bio::Chado::Schema::Result::Sequence::FeaturePubprop",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 feature_relationships

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Sequence::FeatureRelationship>

=cut

__PACKAGE__->has_many(
  "feature_relationships",
  "Bio::Chado::Schema::Result::Sequence::FeatureRelationship",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 feature_relationshipprops

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Sequence::FeatureRelationshipprop>

=cut

__PACKAGE__->has_many(
  "feature_relationshipprops",
  "Bio::Chado::Schema::Result::Sequence::FeatureRelationshipprop",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 genotypes

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Genetic::Genotype>

=cut

__PACKAGE__->has_many(
  "genotypes",
  "Bio::Chado::Schema::Result::Genetic::Genotype",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 genotypeprops

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Genetic::Genotypeprop>

=cut

__PACKAGE__->has_many(
  "genotypeprops",
  "Bio::Chado::Schema::Result::Genetic::Genotypeprop",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 libraries

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Library::Library>

=cut

__PACKAGE__->has_many(
  "libraries",
  "Bio::Chado::Schema::Result::Library::Library",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 library_cvterms

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Library::LibraryCvterm>

=cut

__PACKAGE__->has_many(
  "library_cvterms",
  "Bio::Chado::Schema::Result::Library::LibraryCvterm",
  { "foreign.cvterm_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 libraryprops

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Library::Libraryprop>

=cut

__PACKAGE__->has_many(
  "libraryprops",
  "Bio::Chado::Schema::Result::Library::Libraryprop",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 nd_experiments

Type: has_many

Related object: L<Bio::Chado::Schema::Result::NaturalDiversity::NdExperiment>

=cut

__PACKAGE__->has_many(
  "nd_experiments",
  "Bio::Chado::Schema::Result::NaturalDiversity::NdExperiment",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 nd_experimentprops

Type: has_many

Related object: L<Bio::Chado::Schema::Result::NaturalDiversity::NdExperimentprop>

=cut

__PACKAGE__->has_many(
  "nd_experimentprops",
  "Bio::Chado::Schema::Result::NaturalDiversity::NdExperimentprop",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 nd_experiment_stocks

Type: has_many

Related object: L<Bio::Chado::Schema::Result::NaturalDiversity::NdExperimentStock>

=cut

__PACKAGE__->has_many(
  "nd_experiment_stocks",
  "Bio::Chado::Schema::Result::NaturalDiversity::NdExperimentStock",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 nd_experiment_stockprops

Type: has_many

Related object: L<Bio::Chado::Schema::Result::NaturalDiversity::NdExperimentStockprop>

=cut

__PACKAGE__->has_many(
  "nd_experiment_stockprops",
  "Bio::Chado::Schema::Result::NaturalDiversity::NdExperimentStockprop",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 nd_geolocationprops

Type: has_many

Related object: L<Bio::Chado::Schema::Result::NaturalDiversity::NdGeolocationprop>

=cut

__PACKAGE__->has_many(
  "nd_geolocationprops",
  "Bio::Chado::Schema::Result::NaturalDiversity::NdGeolocationprop",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 nd_protocols

Type: has_many

Related object: L<Bio::Chado::Schema::Result::NaturalDiversity::NdProtocol>

=cut

__PACKAGE__->has_many(
  "nd_protocols",
  "Bio::Chado::Schema::Result::NaturalDiversity::NdProtocol",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 nd_protocolprops

Type: has_many

Related object: L<Bio::Chado::Schema::Result::NaturalDiversity::NdProtocolprop>

=cut

__PACKAGE__->has_many(
  "nd_protocolprops",
  "Bio::Chado::Schema::Result::NaturalDiversity::NdProtocolprop",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 nd_protocol_reagents

Type: has_many

Related object: L<Bio::Chado::Schema::Result::NaturalDiversity::NdProtocolReagent>

=cut

__PACKAGE__->has_many(
  "nd_protocol_reagents",
  "Bio::Chado::Schema::Result::NaturalDiversity::NdProtocolReagent",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 nd_reagents

Type: has_many

Related object: L<Bio::Chado::Schema::Result::NaturalDiversity::NdReagent>

=cut

__PACKAGE__->has_many(
  "nd_reagents",
  "Bio::Chado::Schema::Result::NaturalDiversity::NdReagent",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 nd_reagentprops

Type: has_many

Related object: L<Bio::Chado::Schema::Result::NaturalDiversity::NdReagentprop>

=cut

__PACKAGE__->has_many(
  "nd_reagentprops",
  "Bio::Chado::Schema::Result::NaturalDiversity::NdReagentprop",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 nd_reagent_relationships

Type: has_many

Related object: L<Bio::Chado::Schema::Result::NaturalDiversity::NdReagentRelationship>

=cut

__PACKAGE__->has_many(
  "nd_reagent_relationships",
  "Bio::Chado::Schema::Result::NaturalDiversity::NdReagentRelationship",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 organismprops

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Organism::Organismprop>

=cut

__PACKAGE__->has_many(
  "organismprops",
  "Bio::Chado::Schema::Result::Organism::Organismprop",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 phendescs

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Genetic::Phendesc>

=cut

__PACKAGE__->has_many(
  "phendescs",
  "Bio::Chado::Schema::Result::Genetic::Phendesc",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 phenotype_assays

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Phenotype::Phenotype>

=cut

__PACKAGE__->has_many(
  "phenotype_assays",
  "Bio::Chado::Schema::Result::Phenotype::Phenotype",
  { "foreign.assay_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 phenotype_attrs

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Phenotype::Phenotype>

=cut

__PACKAGE__->has_many(
  "phenotype_attrs",
  "Bio::Chado::Schema::Result::Phenotype::Phenotype",
  { "foreign.attr_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 phenotype_observables

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Phenotype::Phenotype>

=cut

__PACKAGE__->has_many(
  "phenotype_observables",
  "Bio::Chado::Schema::Result::Phenotype::Phenotype",
  { "foreign.observable_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 phenotype_cvalues

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Phenotype::Phenotype>

=cut

__PACKAGE__->has_many(
  "phenotype_cvalues",
  "Bio::Chado::Schema::Result::Phenotype::Phenotype",
  { "foreign.cvalue_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 phenotype_comparison_cvterms

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Genetic::PhenotypeComparisonCvterm>

=cut

__PACKAGE__->has_many(
  "phenotype_comparison_cvterms",
  "Bio::Chado::Schema::Result::Genetic::PhenotypeComparisonCvterm",
  { "foreign.cvterm_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 phenotype_cvterms

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Phenotype::PhenotypeCvterm>

=cut

__PACKAGE__->has_many(
  "phenotype_cvterms",
  "Bio::Chado::Schema::Result::Phenotype::PhenotypeCvterm",
  { "foreign.cvterm_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 phenotypeprops

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Phenotype::Phenotypeprop>

=cut

__PACKAGE__->has_many(
  "phenotypeprops",
  "Bio::Chado::Schema::Result::Phenotype::Phenotypeprop",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 phenstatements

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Genetic::Phenstatement>

=cut

__PACKAGE__->has_many(
  "phenstatements",
  "Bio::Chado::Schema::Result::Genetic::Phenstatement",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 phylonodes

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Phylogeny::Phylonode>

=cut

__PACKAGE__->has_many(
  "phylonodes",
  "Bio::Chado::Schema::Result::Phylogeny::Phylonode",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 phylonodeprops

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Phylogeny::Phylonodeprop>

=cut

__PACKAGE__->has_many(
  "phylonodeprops",
  "Bio::Chado::Schema::Result::Phylogeny::Phylonodeprop",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 phylonode_relationships

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Phylogeny::PhylonodeRelationship>

=cut

__PACKAGE__->has_many(
  "phylonode_relationships",
  "Bio::Chado::Schema::Result::Phylogeny::PhylonodeRelationship",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 phylotrees

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Phylogeny::Phylotree>

=cut

__PACKAGE__->has_many(
  "phylotrees",
  "Bio::Chado::Schema::Result::Phylogeny::Phylotree",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 projectprops

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Project::Projectprop>

=cut

__PACKAGE__->has_many(
  "projectprops",
  "Bio::Chado::Schema::Result::Project::Projectprop",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 project_relationships

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Project::ProjectRelationship>

=cut

__PACKAGE__->has_many(
  "project_relationships",
  "Bio::Chado::Schema::Result::Project::ProjectRelationship",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 protocols

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Mage::Protocol>

=cut

__PACKAGE__->has_many(
  "protocols",
  "Bio::Chado::Schema::Result::Mage::Protocol",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 protocolparam_unittypes

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Mage::Protocolparam>

=cut

__PACKAGE__->has_many(
  "protocolparam_unittypes",
  "Bio::Chado::Schema::Result::Mage::Protocolparam",
  { "foreign.unittype_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 protocolparam_datatypes

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Mage::Protocolparam>

=cut

__PACKAGE__->has_many(
  "protocolparam_datatypes",
  "Bio::Chado::Schema::Result::Mage::Protocolparam",
  { "foreign.datatype_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 pubs

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Pub::Pub>

=cut

__PACKAGE__->has_many(
  "pubs",
  "Bio::Chado::Schema::Result::Pub::Pub",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 pubprops

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Pub::Pubprop>

=cut

__PACKAGE__->has_many(
  "pubprops",
  "Bio::Chado::Schema::Result::Pub::Pubprop",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 pub_relationships

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Pub::PubRelationship>

=cut

__PACKAGE__->has_many(
  "pub_relationships",
  "Bio::Chado::Schema::Result::Pub::PubRelationship",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 quantificationprops

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Mage::Quantificationprop>

=cut

__PACKAGE__->has_many(
  "quantificationprops",
  "Bio::Chado::Schema::Result::Mage::Quantificationprop",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 quantification_relationships

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Mage::QuantificationRelationship>

=cut

__PACKAGE__->has_many(
  "quantification_relationships",
  "Bio::Chado::Schema::Result::Mage::QuantificationRelationship",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 stocks

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Stock::Stock>

=cut

__PACKAGE__->has_many(
  "stocks",
  "Bio::Chado::Schema::Result::Stock::Stock",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 stockcollections

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Stock::Stockcollection>

=cut

__PACKAGE__->has_many(
  "stockcollections",
  "Bio::Chado::Schema::Result::Stock::Stockcollection",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 stockcollectionprops

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Stock::Stockcollectionprop>

=cut

__PACKAGE__->has_many(
  "stockcollectionprops",
  "Bio::Chado::Schema::Result::Stock::Stockcollectionprop",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 stock_cvterms

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Stock::StockCvterm>

=cut

__PACKAGE__->has_many(
  "stock_cvterms",
  "Bio::Chado::Schema::Result::Stock::StockCvterm",
  { "foreign.cvterm_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 stock_cvtermprops

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Stock::StockCvtermprop>

=cut

__PACKAGE__->has_many(
  "stock_cvtermprops",
  "Bio::Chado::Schema::Result::Stock::StockCvtermprop",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 stock_dbxrefprops

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Stock::StockDbxrefprop>

=cut

__PACKAGE__->has_many(
  "stock_dbxrefprops",
  "Bio::Chado::Schema::Result::Stock::StockDbxrefprop",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 stockprops

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Stock::Stockprop>

=cut

__PACKAGE__->has_many(
  "stockprops",
  "Bio::Chado::Schema::Result::Stock::Stockprop",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 stock_relationships

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Stock::StockRelationship>

=cut

__PACKAGE__->has_many(
  "stock_relationships",
  "Bio::Chado::Schema::Result::Stock::StockRelationship",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 stock_relationship_cvterms

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Stock::StockRelationshipCvterm>

=cut

__PACKAGE__->has_many(
  "stock_relationship_cvterms",
  "Bio::Chado::Schema::Result::Stock::StockRelationshipCvterm",
  { "foreign.cvterm_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 studydesignprops

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Mage::Studydesignprop>

=cut

__PACKAGE__->has_many(
  "studydesignprops",
  "Bio::Chado::Schema::Result::Mage::Studydesignprop",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 studyfactors

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Mage::Studyfactor>

=cut

__PACKAGE__->has_many(
  "studyfactors",
  "Bio::Chado::Schema::Result::Mage::Studyfactor",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 studyprops

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Mage::Studyprop>

=cut

__PACKAGE__->has_many(
  "studyprops",
  "Bio::Chado::Schema::Result::Mage::Studyprop",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 studyprop_features

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Mage::StudypropFeature>

=cut

__PACKAGE__->has_many(
  "studyprop_features",
  "Bio::Chado::Schema::Result::Mage::StudypropFeature",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 synonyms

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Sequence::Synonym>

=cut

__PACKAGE__->has_many(
  "synonyms",
  "Bio::Chado::Schema::Result::Sequence::Synonym",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 treatments

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Mage::Treatment>

=cut

__PACKAGE__->has_many(
  "treatments",
  "Bio::Chado::Schema::Result::Mage::Treatment",
  { "foreign.type_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);


# Created by DBIx::Class::Schema::Loader v0.07010 @ 2011-11-07 13:19:16
# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:cPH9EGtsJO7PK5U3UZ9LvA

use Carp;

=head1 ADDITIONAL RELATIONS

=head2 cvtermprops

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Cv::Cvtermprop>

This C<cvtermprops> relation is a convenient synonym for the
autogenerated L</cvtermprop_cvterms> above, since most often you want
the properties for the cvterm itself.

If you really do want the Cvtermprop rows that have this cvterm as
their B<type>, use C<cvtermprop_types>, listed above.

=cut

__PACKAGE__->has_many(
  "cvtermprops",
  "Bio::Chado::Schema::Result::Cv::Cvtermprop",
  { "foreign.cvterm_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);

=head2 cvtermsynonyms

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Cv::Cvtermsynonym>

=cut
__PACKAGE__->has_many(
  "cvtermsynonyms",
  "Bio::Chado::Schema::Result::Cv::Cvtermsynonym",
  { "foreign.cvterm_id" => "self.cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);


=head1 ADDITIONAL METHODS

=head2 add_synonym

 Usage:        $self->add_synonym($synonym , { type => 'exact' , autocreate => 1} );
 Desc:         adds the synonym $new_synonym to this cvterm
               If the synonym $new_synonym already exists,
               nothing is added.
 Args:         a synonym name  and
    options hashref as:
          {
            synonym_type => [e.g. exact, narrow, broad, related],
            autocreate => 0,
               (optional) boolean, if passed, automatically create cv,
               cvterm, and dbxref rows if one cannot be found for the
               given synonym name.  Default false.

            cv_name => cv.name to use for the given synonym type.
                       Defaults to 'synonym_type',

            db_name => db.name to use for autocreated dbxrefs,
                       default 'null',

            definitions => optional hashref of:
                { cvterm_name => definition,
                }
             to load into the cvterm table when autocreating cvterms
          }
 Ret:          a Cvtermsynonym object

=cut

sub add_synonym {
    my ($self, $synonym, $opts) = @_;
    my $schema = $self->result_source->schema;
    $opts ||= {};
    $opts->{cv_name} = 'synonym_type'
        unless defined $opts->{cv_name};
    $opts->{db_name} = 'null'
        unless defined $opts->{db_name};
    $opts->{dbxref_accession_prefix} = 'autocreated:'
        unless defined $opts->{dbxref_accession_prefix};
    my $data;
    $data->{synonym} = $synonym;

    if (defined $opts->{synonym_type} ) {
      my $synonym_type= $opts->{synonym_type} ;
      my $synonym_db; #< set as needed below
      my $synonym_cv = do {
          my $cvrs = $schema->resultset('Cv::Cv');
          my $find_or_create = $opts->{autocreate} ? 'find_or_create' : 'find';
          $cvrs->$find_or_create({ name => $opts->{cv_name}},
                           { key => 'cv_c1' })
            or croak "cv '$opts->{cv_name}' not found and autocreate option not passed, cannot continue";
      };

      # find/create cvterm and dbxref for the synonym,