CaCORE
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html/CaBIO.html view on Meta::CPAN
<ul>
<li><a href="#abstract">ABSTRACT</a></li>
<li><a href="#synopsis">SYNOPSIS</a></li>
<li><a href="#description">DESCRIPTION</a></li>
<li><a href="#attributes_of_tissue">ATTRIBUTES of Tissue</a></li>
<li><a href="#associations_of_tissue">ASSOCIATIONS of Tissue</a></li>
</ul>
<li><a href="#vocabulary">Vocabulary</a></li>
<ul>
<li><a href="#abstract">ABSTRACT</a></li>
<li><a href="#synopsis">SYNOPSIS</a></li>
<li><a href="#description">DESCRIPTION</a></li>
<li><a href="#attributes_of_vocabulary">ATTRIBUTES of Vocabulary</a></li>
<li><a href="#associations_of_vocabulary">ASSOCIATIONS of Vocabulary</a></li>
</ul>
<li><a href="#support">SUPPORT</a></li>
<li><a href="#author">AUTHOR</a></li>
<li><a href="#copyright_and_license">COPYRIGHT AND LICENSE</a></li>
</ul>
<!-- INDEX END -->
<hr />
<p>
</p>
<hr />
<h1><a name="agent">Agent</a></h1>
<p>CaCORE::CaBIO::Agent - Perl extension for Agent.</p>
<p>
</p>
<h2><a name="abstract">ABSTRACT</a></h2>
<p>The CaCORE::CaBIO::Agent is a Perl object representation of the
CaCORE Agent object.</p>
<p>
</p>
<h2><a name="synopsis">SYNOPSIS</a></h2>
<p>See <a href="/CaCORE/ApplicationService.html">the CaCORE::ApplicationService manpage</a>.</p>
<p>
</p>
<h2><a name="description">DESCRIPTION</a></h2>
<p>
</p>
<h2><a name="attributes_of_agent">ATTRIBUTES of Agent</a></h2>
<p>The following are all the attributes of the Agent object and their data types:</p>
<dl>
<dt><strong><a name="item_evsid">EVSId</a></strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong><a name="item_nscnumber">NSCNumber</a></strong>
<dd>
<p>data type: <code>long</code></p>
</dd>
</li>
<dt><strong><a name="item_bigid">bigid</a></strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong><a name="item_comment">comment</a></strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong><a name="item_id">id</a></strong>
<dd>
<p>data type: <code>long</code></p>
</dd>
</li>
<dt><strong><a name="item_iscmapagent">isCMAPAgent</a></strong>
<dd>
<p>data type: <code>boolean</code></p>
</dd>
</li>
<dt><strong><a name="item_name">name</a></strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong><a name="item_source">source</a></strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
</dl>
<p>Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.</p>
<p>
</p>
<h2><a name="associations_of_agent">ASSOCIATIONS of Agent</a></h2>
<p>The following are all the objects that are associated with the Agent:</p>
<dl>
<dt><strong><a name="item_instance_of__2fclinicaltrialprotocol_3a">Instance of <a href="#clinicaltrialprotocol">ClinicalTrialProtocol</a>:</a></strong>
<dd>
<p>One to many assoication, use <code>getClinicalTrialProtocolCollection</code> to get a collection of associated ClinicalTrialProtocol.</p>
</dd>
</li>
<dt><strong><a name="item_instance_of__2ftarget_3a">Instance of <a href="#target">Target</a>:</a></strong>
<dd>
<p>One to many assoication, use <code>getTargetCollection</code> to get a collection of associated Target.</p>
</dd>
</li>
</dl>
<p>
</p>
<hr />
<h1><a name="anomaly">Anomaly</a></h1>
<p>CaCORE::CaBIO::Anomaly - Perl extension for Anomaly.</p>
<p>
</p>
<h2><a name="abstract">ABSTRACT</a></h2>
<p>The CaCORE::CaBIO::Anomaly is a Perl object representation of the
CaCORE Anomaly object.</p>
<p>
</p>
<h2><a name="synopsis">SYNOPSIS</a></h2>
<p>See <a href="/CaCORE/ApplicationService.html">the CaCORE::ApplicationService manpage</a>.</p>
<p>
</p>
<h2><a name="description">DESCRIPTION</a></h2>
<p>
</p>
<h2><a name="attributes_of_anomaly">ATTRIBUTES of Anomaly</a></h2>
<p>The following are all the attributes of the Anomaly object and their data types:</p>
<dl>
<dt><strong>bigid</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong><a name="item_description">description</a></strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong>id</strong>
<dd>
<p>data type: <code>long</code></p>
</dd>
</li>
</dl>
<p>Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.</p>
<p>
</p>
<h2><a name="associations_of_anomaly">ASSOCIATIONS of Anomaly</a></h2>
<p>The following are all the objects that are associated with the Anomaly:</p>
<dl>
<dt><strong><a name="item_collection_of__2fhistopathology_3a">Collection of <a href="#histopathology">Histopathology</a>:</a></strong>
<dd>
<p>Many to one assoication, use <code>getHistopathology</code> to get the associated Histopathology.</p>
</dd>
</li>
<dt><strong><a name="item_instance_of__2forganontology_3a">Instance of <a href="#organontology">OrganOntology</a>:</a></strong>
<dd>
<p>One to many assoication, use <code>getOrganOntologyCollection</code> to get a collection of associated OrganOntology.</p>
</dd>
</li>
<dt><strong><a name="item_instance_of__2fvocabulary_3a">Instance of <a href="#vocabulary">Vocabulary</a>:</a></strong>
<dd>
<p>One to many assoication, use <code>getVocabularyCollection</code> to get a collection of associated Vocabulary.</p>
</dd>
</li>
</dl>
<p>
</p>
<hr />
<h1><a name="chromosome">Chromosome</a></h1>
<p>CaCORE::CaBIO::Chromosome - Perl extension for Chromosome.</p>
<p>
</p>
<h2><a name="abstract">ABSTRACT</a></h2>
<p>The CaCORE::CaBIO::Chromosome is a Perl object representation of the
CaCORE Chromosome object.</p>
<p>
</p>
<h2><a name="synopsis">SYNOPSIS</a></h2>
<p>See <a href="/CaCORE/ApplicationService.html">the CaCORE::ApplicationService manpage</a>.</p>
<p>
</p>
<h2><a name="description">DESCRIPTION</a></h2>
<p>
</p>
<h2><a name="attributes_of_chromosome">ATTRIBUTES of Chromosome</a></h2>
<p>The following are all the attributes of the Chromosome object and their data types:</p>
<dl>
<dt><strong>bigid</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong>id</strong>
<dd>
<p>data type: <code>long</code></p>
</dd>
</li>
<dt><strong><a name="item_number">number</a></strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
</dl>
<p>Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.</p>
<p>
</p>
<h2><a name="associations_of_chromosome">ASSOCIATIONS of Chromosome</a></h2>
<p>The following are all the objects that are associated with the Chromosome:</p>
<dl>
<dt><strong><a name="item_instance_of__2fgene_3a">Instance of <a href="#gene">Gene</a>:</a></strong>
<dd>
<p>One to many assoication, use <code>getGeneCollection</code> to get a collection of associated Gene.</p>
</dd>
</li>
<dt><strong><a name="item_instance_of__2flocation_3a">Instance of <a href="#location">Location</a>:</a></strong>
<dd>
<p>One to many assoication, use <code>getLocationCollection</code> to get a collection of associated Location.</p>
</dd>
</li>
<dt><strong><a name="item_collection_of__2ftaxon_3a">Collection of <a href="#taxon">Taxon</a>:</a></strong>
<dd>
<p>Many to one assoication, use <code>getTaxon</code> to get the associated Taxon.</p>
</dd>
</li>
</dl>
<p>
</p>
<hr />
<h1><a name="clinicaltrialprotocol">ClinicalTrialProtocol</a></h1>
<p>CaCORE::CaBIO::ClinicalTrialProtocol - Perl extension for ClinicalTrialProtocol.</p>
<p>
</p>
<h2><a name="abstract">ABSTRACT</a></h2>
<p>The CaCORE::CaBIO::ClinicalTrialProtocol is a Perl object representation of the
CaCORE ClinicalTrialProtocol object.</p>
<p>
</p>
<h2><a name="synopsis">SYNOPSIS</a></h2>
<p>See <a href="/CaCORE/ApplicationService.html">the CaCORE::ApplicationService manpage</a>.</p>
<p>
</p>
<h2><a name="description">DESCRIPTION</a></h2>
<p>
</p>
<h2><a name="attributes_of_clinicaltrialprotocol">ATTRIBUTES of ClinicalTrialProtocol</a></h2>
<p>The following are all the attributes of the ClinicalTrialProtocol object and their data types:</p>
<dl>
<dt><strong><a name="item_nihadmincode">NIHAdminCode</a></strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong><a name="item_pdqidentifier">PDQIdentifier</a></strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong><a name="item_piname">PIName</a></strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong>bigid</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong><a name="item_currentstatus">currentStatus</a></strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong><a name="item_currentstatusdate">currentStatusDate</a></strong>
<dd>
<p>data type: <code>dateTime</code></p>
</dd>
</li>
<dt><strong><a name="item_documentnumber">documentNumber</a></strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong>id</strong>
<dd>
<p>data type: <code>long</code></p>
</dd>
</li>
<dt><strong><a name="item_leadorganizationid">leadOrganizationId</a></strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong><a name="item_leadorganizationname">leadOrganizationName</a></strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong><a name="item_participationtype">participationType</a></strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong><a name="item_phase">phase</a></strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong><a name="item_title">title</a></strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong><a name="item_treatmentflag">treatmentFlag</a></strong>
html/CaBIO.html view on Meta::CPAN
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
</dl>
<p>Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.</p>
<p>
</p>
<h2><a name="associations_of_clinicaltrialprotocol">ASSOCIATIONS of ClinicalTrialProtocol</a></h2>
<p>The following are all the objects that are associated with the ClinicalTrialProtocol:</p>
<dl>
<dt><strong><a name="item_instance_of__2fagent_3a">Instance of <a href="#agent">Agent</a>:</a></strong>
<dd>
<p>One to many assoication, use <code>getAgentCollection</code> to get a collection of associated Agent.</p>
</dd>
</li>
<dt><strong><a name="item_instance_of__2fdiseaseontology_3a">Instance of <a href="#diseaseontology">DiseaseOntology</a>:</a></strong>
<dd>
<p>One to many assoication, use <code>getDiseaseOntologyCollection</code> to get a collection of associated DiseaseOntology.</p>
</dd>
</li>
<dt><strong><a name="item_instance_of__2fhistopathology_3a">Instance of <a href="#histopathology">Histopathology</a>:</a></strong>
<dd>
<p>One to many assoication, use <code>getHistopathologyCollection</code> to get a collection of associated Histopathology.</p>
</dd>
</li>
<dt><strong><a name="item_instance_of__2fprotocolassociation_3a">Instance of <a href="#protocolassociation">ProtocolAssociation</a>:</a></strong>
<dd>
<p>One to many assoication, use <code>getProtocolAssociationCollection</code> to get a collection of associated ProtocolAssociation.</p>
</dd>
</li>
</dl>
<p>
</p>
<hr />
<h1><a name="clone">Clone</a></h1>
<p>CaCORE::CaBIO::Clone - Perl extension for Clone.</p>
<p>
</p>
<h2><a name="abstract">ABSTRACT</a></h2>
<p>The CaCORE::CaBIO::Clone is a Perl object representation of the
CaCORE Clone object.</p>
<p>
</p>
<h2><a name="synopsis">SYNOPSIS</a></h2>
<p>See <a href="/CaCORE/ApplicationService.html">the CaCORE::ApplicationService manpage</a>.</p>
<p>
</p>
<h2><a name="description">DESCRIPTION</a></h2>
<p>
</p>
<h2><a name="attributes_of_clone">ATTRIBUTES of Clone</a></h2>
<p>The following are all the attributes of the Clone object and their data types:</p>
<dl>
<dt><strong>bigid</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong>id</strong>
<dd>
<p>data type: <code>long</code></p>
</dd>
</li>
<dt><strong><a name="item_insertsize">insertSize</a></strong>
<dd>
<p>data type: <code>long</code></p>
</dd>
</li>
<dt><strong>name</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong><a name="item_type">type</a></strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
</dl>
<p>Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.</p>
<p>
</p>
<h2><a name="associations_of_clone">ASSOCIATIONS of Clone</a></h2>
<p>The following are all the objects that are associated with the Clone:</p>
<dl>
<dt><strong><a name="item_instance_of__2fclonerelativelocation_3a">Instance of <a href="#clonerelativelocation">CloneRelativeLocation</a>:</a></strong>
<dd>
<p>One to many assoication, use <code>getCloneRelativeLocationCollection</code> to get a collection of associated CloneRelativeLocation.</p>
</dd>
</li>
<dt><strong><a name="item_collection_of__2flibrary_3a">Collection of <a href="#library">Library</a>:</a></strong>
<dd>
<p>Many to one assoication, use <code>getLibrary</code> to get the associated Library.</p>
</dd>
</li>
<dt><strong><a name="item_instance_of__2fnucleicacidsequence_3a">Instance of <a href="#nucleicacidsequence">NucleicAcidSequence</a>:</a></strong>
<dd>
<p>One to many assoication, use <code>getNucleicAcidSequenceCollection</code> to get a collection of associated NucleicAcidSequence.</p>
</dd>
</li>
<dt><strong><a name="item_instance_of__2ftaxon_3a">Instance of <a href="#taxon">Taxon</a>:</a></strong>
<dd>
<p>One to many assoication, use <code>getTaxonCollection</code> to get a collection of associated Taxon.</p>
</dd>
</li>
</dl>
<p>
</p>
<hr />
<h1><a name="clonerelativelocation">CloneRelativeLocation</a></h1>
<p>CaCORE::CaBIO::CloneRelativeLocation - Perl extension for CloneRelativeLocation.</p>
<p>
</p>
<h2><a name="abstract">ABSTRACT</a></h2>
<p>The CaCORE::CaBIO::CloneRelativeLocation is a Perl object representation of the
CaCORE CloneRelativeLocation object.</p>
<p>
</p>
<h2><a name="synopsis">SYNOPSIS</a></h2>
<p>See <a href="/CaCORE/ApplicationService.html">the CaCORE::ApplicationService manpage</a>.</p>
<p>
</p>
<h2><a name="description">DESCRIPTION</a></h2>
<p>
</p>
<h2><a name="attributes_of_clonerelativelocation">ATTRIBUTES of CloneRelativeLocation</a></h2>
<p>The following are all the attributes of the CloneRelativeLocation object and their data types:</p>
<dl>
<dt><strong>bigid</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong>id</strong>
<dd>
<p>data type: <code>long</code></p>
</dd>
</li>
<dt><strong>type</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
</dl>
<p>Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.</p>
<p>
</p>
<h2><a name="associations_of_clonerelativelocation">ASSOCIATIONS of CloneRelativeLocation</a></h2>
<p>The following are all the objects that are associated with the CloneRelativeLocation:</p>
<dl>
<dt><strong><a name="item_collection_of__2fclone_3a">Collection of <a href="#clone">Clone</a>:</a></strong>
<dd>
<p>Many to one assoication, use <code>getClone</code> to get the associated Clone.</p>
</dd>
</li>
<dt><strong><a name="item_collection_of__2fnucleicacidsequence_3a">Collection of <a href="#nucleicacidsequence">NucleicAcidSequence</a>:</a></strong>
<dd>
<p>Many to one assoication, use <code>getNucleicAcidSequence</code> to get the associated NucleicAcidSequence.</p>
</dd>
</li>
</dl>
<p>
</p>
<hr />
<h1><a name="cytoband">Cytoband</a></h1>
<p>CaCORE::CaBIO::Cytoband - Perl extension for Cytoband.</p>
<p>
</p>
<h2><a name="abstract">ABSTRACT</a></h2>
<p>The CaCORE::CaBIO::Cytoband is a Perl object representation of the
CaCORE Cytoband object.</p>
<p>
</p>
<h2><a name="synopsis">SYNOPSIS</a></h2>
<p>See <a href="/CaCORE/ApplicationService.html">the CaCORE::ApplicationService manpage</a>.</p>
<p>
</p>
<h2><a name="description">DESCRIPTION</a></h2>
<p>
</p>
<h2><a name="attributes_of_cytoband">ATTRIBUTES of Cytoband</a></h2>
<p>The following are all the attributes of the Cytoband object and their data types:</p>
<dl>
<dt><strong>bigid</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong>id</strong>
<dd>
<p>data type: <code>long</code></p>
</dd>
</li>
<dt><strong>name</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
</dl>
<p>Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.</p>
<p>
</p>
<h2><a name="associations_of_cytoband">ASSOCIATIONS of Cytoband</a></h2>
<p>The following are all the objects that are associated with the Cytoband:</p>
<dl>
<dt><strong><a name="item_collection_of__2fphysicallocation_3a">Collection of <a href="#physicallocation">PhysicalLocation</a>:</a></strong>
<dd>
<p>Many to one assoication, use <code>getPhysicalLocation</code> to get the associated PhysicalLocation.</p>
</dd>
</li>
</dl>
<p>
</p>
<hr />
<h1><a name="cytogeneticlocation">CytogeneticLocation</a></h1>
<p>CaCORE::CaBIO::CytogeneticLocation - Perl extension for CytogeneticLocation.</p>
<p>
</p>
<h2><a name="abstract">ABSTRACT</a></h2>
<p>The CaCORE::CaBIO::CytogeneticLocation is a Perl object representation of the
CaCORE CytogeneticLocation object.</p>
<p>CytogeneticLocation extends from domain object <a href="#location">Location</a>.</p>
<p>
</p>
<h2><a name="synopsis">SYNOPSIS</a></h2>
<p>See <a href="/CaCORE/ApplicationService.html">the CaCORE::ApplicationService manpage</a>.</p>
<p>
</p>
<h2><a name="description">DESCRIPTION</a></h2>
<p>
</p>
<h2><a name="attributes_of_cytogeneticlocation">ATTRIBUTES of CytogeneticLocation</a></h2>
<p>The following are all the attributes of the CytogeneticLocation object and their data types:</p>
<dl>
<dt><strong>bigid</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong><a name="item_endcytobandlocid">endCytobandLocId</a></strong>
<dd>
<p>data type: <code>long</code></p>
</dd>
</li>
<dt><strong><a name="item_startcytobandlocid">startCytobandLocId</a></strong>
<dd>
<p>data type: <code>long</code></p>
</dd>
</li>
</dl>
<p>Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.</p>
<p>
</p>
<h2><a name="associations_of_cytogeneticlocation">ASSOCIATIONS of CytogeneticLocation</a></h2>
<p>The following are all the objects that are associated with the CytogeneticLocation:</p>
<dl>
<dt><strong><a name="item_collection_of__2fendcytoband_3a">Collection of <a href="#endcytoband">EndCytoband</a>:</a></strong>
<dd>
<p>Many to one assoication, use <code>getEndCytoband</code> to get the associated EndCytoband.</p>
</dd>
</li>
<dt><strong><a name="item_collection_of__2fstartcytoband_3a">Collection of <a href="#startcytoband">StartCytoband</a>:</a></strong>
<dd>
<p>Many to one assoication, use <code>getStartCytoband</code> to get the associated StartCytoband.</p>
</dd>
</li>
</dl>
<p>
</p>
<hr />
<h1><a name="diseaseontology">DiseaseOntology</a></h1>
<p>CaCORE::CaBIO::DiseaseOntology - Perl extension for DiseaseOntology.</p>
<p>
</p>
<h2><a name="abstract">ABSTRACT</a></h2>
<p>The CaCORE::CaBIO::DiseaseOntology is a Perl object representation of the
CaCORE DiseaseOntology object.</p>
<p>
</p>
<h2><a name="synopsis">SYNOPSIS</a></h2>
<p>See <a href="/CaCORE/ApplicationService.html">the CaCORE::ApplicationService manpage</a>.</p>
<p>
</p>
<h2><a name="description">DESCRIPTION</a></h2>
<p>
</p>
<h2><a name="attributes_of_diseaseontology">ATTRIBUTES of DiseaseOntology</a></h2>
<p>The following are all the attributes of the DiseaseOntology object and their data types:</p>
<dl>
<dt><strong>bigid</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong>id</strong>
<dd>
<p>data type: <code>long</code></p>
</dd>
</li>
<dt><strong>name</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
</dl>
<p>Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.</p>
<p>
</p>
<h2><a name="associations_of_diseaseontology">ASSOCIATIONS of DiseaseOntology</a></h2>
<p>The following are all the objects that are associated with the DiseaseOntology:</p>
<dl>
<dt><strong><a name="item_instance_of__2fchilddiseaseontologyrelationship_3a">Instance of <a href="#childdiseaseontologyrelationship">ChildDiseaseOntologyRelationship</a>:</a></strong>
<dd>
<p>One to many assoication, use <code>getChildDiseaseOntologyRelationshipCollection</code> to get a collection of associated ChildDiseaseOntologyRelationship.</p>
</dd>
</li>
<dt><strong>Instance of <a href="#clinicaltrialprotocol">ClinicalTrialProtocol</a>:</strong>
<dd>
<p>One to many assoication, use <code>getClinicalTrialProtocolCollection</code> to get a collection of associated ClinicalTrialProtocol.</p>
</dd>
</li>
<dt><strong>Instance of <a href="#histopathology">Histopathology</a>:</strong>
<dd>
<p>One to many assoication, use <code>getHistopathologyCollection</code> to get a collection of associated Histopathology.</p>
</dd>
</li>
<dt><strong><a name="item_instance_of__2fparentdiseaseontologyrelationship_3">Instance of <a href="#parentdiseaseontologyrelationship">ParentDiseaseOntologyRelationship</a>:</a></strong>
<dd>
<p>One to many assoication, use <code>getParentDiseaseOntologyRelationshipCollection</code> to get a collection of associated ParentDiseaseOntologyRelationship.</p>
</dd>
</li>
</dl>
<p>
</p>
<hr />
<h1><a name="diseaseontologyrelationship">DiseaseOntologyRelationship</a></h1>
<p>CaCORE::CaBIO::DiseaseOntologyRelationship - Perl extension for DiseaseOntologyRelationship.</p>
<p>
</p>
<h2><a name="abstract">ABSTRACT</a></h2>
<p>The CaCORE::CaBIO::DiseaseOntologyRelationship is a Perl object representation of the
CaCORE DiseaseOntologyRelationship object.</p>
<p>
</p>
<h2><a name="synopsis">SYNOPSIS</a></h2>
<p>See <a href="/CaCORE/ApplicationService.html">the CaCORE::ApplicationService manpage</a>.</p>
<p>
</p>
<h2><a name="description">DESCRIPTION</a></h2>
<p>
</p>
<h2><a name="attributes_of_diseaseontologyrelationship">ATTRIBUTES of DiseaseOntologyRelationship</a></h2>
<p>The following are all the attributes of the DiseaseOntologyRelationship object and their data types:</p>
<dl>
<dt><strong>bigid</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong>id</strong>
<dd>
<p>data type: <code>long</code></p>
</dd>
</li>
<dt><strong>type</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
</dl>
<p>Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.</p>
<p>
</p>
<h2><a name="associations_of_diseaseontologyrelationship">ASSOCIATIONS of DiseaseOntologyRelationship</a></h2>
<p>The following are all the objects that are associated with the DiseaseOntologyRelationship:</p>
<dl>
<dt><strong><a name="item_collection_of__2fchilddiseaseontology_3a">Collection of <a href="#childdiseaseontology">ChildDiseaseOntology</a>:</a></strong>
<dd>
<p>Many to one assoication, use <code>getChildDiseaseOntology</code> to get the associated ChildDiseaseOntology.</p>
</dd>
</li>
<dt><strong><a name="item_collection_of__2fparentdiseaseontology_3a">Collection of <a href="#parentdiseaseontology">ParentDiseaseOntology</a>:</a></strong>
<dd>
<p>Many to one assoication, use <code>getParentDiseaseOntology</code> to get the associated ParentDiseaseOntology.</p>
</dd>
</li>
</dl>
<p>
</p>
<hr />
<h1><a name="gene">Gene</a></h1>
<p>CaCORE::CaBIO::Gene - Perl extension for Gene.</p>
<p>
</p>
<h2><a name="abstract">ABSTRACT</a></h2>
<p>The CaCORE::CaBIO::Gene is a Perl object representation of the
CaCORE Gene object.</p>
<p>
</p>
<h2><a name="synopsis">SYNOPSIS</a></h2>
<p>See <a href="/CaCORE/ApplicationService.html">the CaCORE::ApplicationService manpage</a>.</p>
<p>
</p>
<h2><a name="description">DESCRIPTION</a></h2>
<p>
</p>
<h2><a name="attributes_of_gene">ATTRIBUTES of Gene</a></h2>
<p>The following are all the attributes of the Gene object and their data types:</p>
<dl>
<dt><strong>bigid</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong><a name="item_clusterid">clusterId</a></strong>
<dd>
<p>data type: <code>long</code></p>
</dd>
</li>
<dt><strong><a name="item_fullname">fullName</a></strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong>id</strong>
<dd>
<p>data type: <code>long</code></p>
</dd>
</li>
<dt><strong><a name="item_symbol">symbol</a></strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
</dl>
<p>Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.</p>
<p>
</p>
<h2><a name="associations_of_gene">ASSOCIATIONS of Gene</a></h2>
<p>The following are all the objects that are associated with the Gene:</p>
<dl>
<dt><strong><a name="item_collection_of__2fchromosome_3a">Collection of <a href="#chromosome">Chromosome</a>:</a></strong>
<dd>
<p>Many to one assoication, use <code>getChromosome</code> to get the associated Chromosome.</p>
</dd>
</li>
<dt><strong><a name="item_instance_of__2fdatabasecrossreference_3a">Instance of <a href="#databasecrossreference">DatabaseCrossReference</a>:</a></strong>
<dd>
<p>One to many assoication, use <code>getDatabaseCrossReferenceCollection</code> to get a collection of associated DatabaseCrossReference.</p>
</dd>
</li>
<dt><strong><a name="item_instance_of__2fgenealias_3a">Instance of <a href="#genealias">GeneAlias</a>:</a></strong>
<dd>
<p>One to many assoication, use <code>getGeneAliasCollection</code> to get a collection of associated GeneAlias.</p>
</dd>
</li>
<dt><strong><a name="item_instance_of__2fgeneontology_3a">Instance of <a href="#geneontology">GeneOntology</a>:</a></strong>
<dd>
<p>One to many assoication, use <code>getGeneOntologyCollection</code> to get a collection of associated GeneOntology.</p>
html/CaBIO.html view on Meta::CPAN
</li>
<dt><strong>Instance of <a href="#nucleicacidsequence">NucleicAcidSequence</a>:</strong>
<dd>
<p>One to many assoication, use <code>getNucleicAcidSequenceCollection</code> to get a collection of associated NucleicAcidSequence.</p>
</dd>
</li>
<dt><strong>Instance of <a href="#organontology">OrganOntology</a>:</strong>
<dd>
<p>One to many assoication, use <code>getOrganOntologyCollection</code> to get a collection of associated OrganOntology.</p>
</dd>
</li>
<dt><strong><a name="item_instance_of__2fpathway_3a">Instance of <a href="#pathway">Pathway</a>:</a></strong>
<dd>
<p>One to many assoication, use <code>getPathwayCollection</code> to get a collection of associated Pathway.</p>
</dd>
</li>
<dt><strong><a name="item_instance_of__2fprotein_3a">Instance of <a href="#protein">Protein</a>:</a></strong>
<dd>
<p>One to many assoication, use <code>getProteinCollection</code> to get a collection of associated Protein.</p>
</dd>
</li>
<dt><strong>Instance of <a href="#target">Target</a>:</strong>
<dd>
<p>One to many assoication, use <code>getTargetCollection</code> to get a collection of associated Target.</p>
</dd>
</li>
<dt><strong>Collection of <a href="#taxon">Taxon</a>:</strong>
<dd>
<p>Many to one assoication, use <code>getTaxon</code> to get the associated Taxon.</p>
</dd>
</li>
</dl>
<p>
</p>
<hr />
<h1><a name="genealias">GeneAlias</a></h1>
<p>CaCORE::CaBIO::GeneAlias - Perl extension for GeneAlias.</p>
<p>
</p>
<h2><a name="abstract">ABSTRACT</a></h2>
<p>The CaCORE::CaBIO::GeneAlias is a Perl object representation of the
CaCORE GeneAlias object.</p>
<p>
</p>
<h2><a name="synopsis">SYNOPSIS</a></h2>
<p>See <a href="/CaCORE/ApplicationService.html">the CaCORE::ApplicationService manpage</a>.</p>
<p>
</p>
<h2><a name="description">DESCRIPTION</a></h2>
<p>
</p>
<h2><a name="attributes_of_genealias">ATTRIBUTES of GeneAlias</a></h2>
<p>The following are all the attributes of the GeneAlias object and their data types:</p>
<dl>
<dt><strong>bigid</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong>id</strong>
<dd>
<p>data type: <code>long</code></p>
</dd>
</li>
<dt><strong>name</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong>type</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
</dl>
<p>Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.</p>
<p>
</p>
<h2><a name="associations_of_genealias">ASSOCIATIONS of GeneAlias</a></h2>
<p>The following are all the objects that are associated with the GeneAlias:</p>
<dl>
<dt><strong>Instance of <a href="#gene">Gene</a>:</strong>
<dd>
<p>One to many assoication, use <code>getGeneCollection</code> to get a collection of associated Gene.</p>
</dd>
</li>
</dl>
<p>
</p>
<hr />
<h1><a name="geneontology">GeneOntology</a></h1>
<p>CaCORE::CaBIO::GeneOntology - Perl extension for GeneOntology.</p>
<p>
</p>
<h2><a name="abstract">ABSTRACT</a></h2>
<p>The CaCORE::CaBIO::GeneOntology is a Perl object representation of the
CaCORE GeneOntology object.</p>
<p>
</p>
<h2><a name="synopsis">SYNOPSIS</a></h2>
<p>See <a href="/CaCORE/ApplicationService.html">the CaCORE::ApplicationService manpage</a>.</p>
<p>
</p>
<h2><a name="description">DESCRIPTION</a></h2>
<p>
</p>
<h2><a name="attributes_of_geneontology">ATTRIBUTES of GeneOntology</a></h2>
<p>The following are all the attributes of the GeneOntology object and their data types:</p>
<dl>
<dt><strong>bigid</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong>id</strong>
<dd>
<p>data type: <code>long</code></p>
</dd>
</li>
<dt><strong>name</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
</dl>
<p>Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.</p>
<p>
</p>
<h2><a name="associations_of_geneontology">ASSOCIATIONS of GeneOntology</a></h2>
<p>The following are all the objects that are associated with the GeneOntology:</p>
<dl>
<dt><strong><a name="item_instance_of__2fchildgeneontologyrelationship_3a">Instance of <a href="#childgeneontologyrelationship">ChildGeneOntologyRelationship</a>:</a></strong>
<dd>
<p>One to many assoication, use <code>getChildGeneOntologyRelationshipCollection</code> to get a collection of associated ChildGeneOntologyRelationship.</p>
</dd>
</li>
<dt><strong>Instance of <a href="#gene">Gene</a>:</strong>
<dd>
<p>One to many assoication, use <code>getGeneCollection</code> to get a collection of associated Gene.</p>
</dd>
</li>
<dt><strong><a name="item_instance_of__2fparentgeneontologyrelationship_3a">Instance of <a href="#parentgeneontologyrelationship">ParentGeneOntologyRelationship</a>:</a></strong>
<dd>
<p>One to many assoication, use <code>getParentGeneOntologyRelationshipCollection</code> to get a collection of associated ParentGeneOntologyRelationship.</p>
</dd>
</li>
</dl>
<p>
</p>
<hr />
<h1><a name="geneontologyrelationship">GeneOntologyRelationship</a></h1>
<p>CaCORE::CaBIO::GeneOntologyRelationship - Perl extension for GeneOntologyRelationship.</p>
<p>
</p>
<h2><a name="abstract">ABSTRACT</a></h2>
<p>The CaCORE::CaBIO::GeneOntologyRelationship is a Perl object representation of the
CaCORE GeneOntologyRelationship object.</p>
<p>
</p>
<h2><a name="synopsis">SYNOPSIS</a></h2>
<p>See <a href="/CaCORE/ApplicationService.html">the CaCORE::ApplicationService manpage</a>.</p>
<p>
</p>
<h2><a name="description">DESCRIPTION</a></h2>
<p>
</p>
<h2><a name="attributes_of_geneontologyrelationship">ATTRIBUTES of GeneOntologyRelationship</a></h2>
<p>The following are all the attributes of the GeneOntologyRelationship object and their data types:</p>
<dl>
<dt><strong>bigid</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong>id</strong>
<dd>
<p>data type: <code>long</code></p>
</dd>
</li>
<dt><strong><a name="item_relationshiptype">relationshipType</a></strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
</dl>
<p>Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.</p>
<p>
</p>
<h2><a name="associations_of_geneontologyrelationship">ASSOCIATIONS of GeneOntologyRelationship</a></h2>
<p>The following are all the objects that are associated with the GeneOntologyRelationship:</p>
<dl>
<dt><strong><a name="item_collection_of__2fchildgeneontology_3a">Collection of <a href="#childgeneontology">ChildGeneOntology</a>:</a></strong>
<dd>
<p>Many to one assoication, use <code>getChildGeneOntology</code> to get the associated ChildGeneOntology.</p>
</dd>
</li>
<dt><strong><a name="item_collection_of__2fparentgeneontology_3a">Collection of <a href="#parentgeneontology">ParentGeneOntology</a>:</a></strong>
<dd>
<p>Many to one assoication, use <code>getParentGeneOntology</code> to get the associated ParentGeneOntology.</p>
</dd>
</li>
</dl>
<p>
</p>
<hr />
<h1><a name="generelativelocation">GeneRelativeLocation</a></h1>
<p>CaCORE::CaBIO::GeneRelativeLocation - Perl extension for GeneRelativeLocation.</p>
<p>
</p>
<h2><a name="abstract">ABSTRACT</a></h2>
<p>The CaCORE::CaBIO::GeneRelativeLocation is a Perl object representation of the
CaCORE GeneRelativeLocation object.</p>
<p>
</p>
<h2><a name="synopsis">SYNOPSIS</a></h2>
<p>See <a href="/CaCORE/ApplicationService.html">the CaCORE::ApplicationService manpage</a>.</p>
<p>
</p>
<h2><a name="description">DESCRIPTION</a></h2>
<p>
</p>
<h2><a name="attributes_of_generelativelocation">ATTRIBUTES of GeneRelativeLocation</a></h2>
<p>The following are all the attributes of the GeneRelativeLocation object and their data types:</p>
<dl>
<dt><strong>bigid</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong>id</strong>
<dd>
<p>data type: <code>long</code></p>
</dd>
</li>
<dt><strong>type</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
</dl>
<p>Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.</p>
<p>
</p>
<h2><a name="associations_of_generelativelocation">ASSOCIATIONS of GeneRelativeLocation</a></h2>
<p>The following are all the objects that are associated with the GeneRelativeLocation:</p>
<p>
</p>
<hr />
<h1><a name="genericarray">GenericArray</a></h1>
<p>CaCORE::CaBIO::GenericArray - Perl extension for GenericArray.</p>
<p>
</p>
<h2><a name="abstract">ABSTRACT</a></h2>
<p>The CaCORE::CaBIO::GenericArray is a Perl object representation of the
CaCORE GenericArray object.</p>
<p>
</p>
<h2><a name="synopsis">SYNOPSIS</a></h2>
<p>See <a href="/CaCORE/ApplicationService.html">the CaCORE::ApplicationService manpage</a>.</p>
<p>
</p>
<h2><a name="description">DESCRIPTION</a></h2>
<p>
</p>
<h2><a name="attributes_of_genericarray">ATTRIBUTES of GenericArray</a></h2>
<p>The following are all the attributes of the GenericArray object and their data types:</p>
<dl>
<dt><strong><a name="item_arrayname">arrayName</a></strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong>bigid</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong>id</strong>
<dd>
<p>data type: <code>long</code></p>
</dd>
</li>
<dt><strong><a name="item_platform">platform</a></strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong>type</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
</dl>
<p>Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.</p>
<p>
</p>
<h2><a name="associations_of_genericarray">ASSOCIATIONS of GenericArray</a></h2>
<p>The following are all the objects that are associated with the GenericArray:</p>
<dl>
<dt><strong>Instance of <a href="#genericreporter">GenericReporter</a>:</strong>
<dd>
<p>One to many assoication, use <code>getGenericReporterCollection</code> to get a collection of associated GenericReporter.</p>
</dd>
</li>
</dl>
<p>
</p>
<hr />
<h1><a name="genericreporter">GenericReporter</a></h1>
<p>CaCORE::CaBIO::GenericReporter - Perl extension for GenericReporter.</p>
<p>
</p>
<h2><a name="abstract">ABSTRACT</a></h2>
<p>The CaCORE::CaBIO::GenericReporter is a Perl object representation of the
CaCORE GenericReporter object.</p>
<p>
</p>
<h2><a name="synopsis">SYNOPSIS</a></h2>
<p>See <a href="/CaCORE/ApplicationService.html">the CaCORE::ApplicationService manpage</a>.</p>
<p>
</p>
<h2><a name="description">DESCRIPTION</a></h2>
<p>
</p>
<h2><a name="attributes_of_genericreporter">ATTRIBUTES of GenericReporter</a></h2>
<p>The following are all the attributes of the GenericReporter object and their data types:</p>
<dl>
<dt><strong>bigid</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong>id</strong>
<dd>
<p>data type: <code>long</code></p>
</dd>
</li>
<dt><strong>name</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong>type</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
</dl>
<p>Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.</p>
<p>
</p>
<h2><a name="associations_of_genericreporter">ASSOCIATIONS of GenericReporter</a></h2>
<p>The following are all the objects that are associated with the GenericReporter:</p>
<dl>
<dt><strong><a name="item_collection_of__2fgene_3a">Collection of <a href="#gene">Gene</a>:</a></strong>
<dd>
<p>Many to one assoication, use <code>getGene</code> to get the associated Gene.</p>
</dd>
</li>
<dt><strong><a name="item_instance_of__2fgenericarray_3a">Instance of <a href="#genericarray">GenericArray</a>:</a></strong>
<dd>
<p>One to many assoication, use <code>getGenericArrayCollection</code> to get a collection of associated GenericArray.</p>
</dd>
</li>
</dl>
<p>
</p>
<hr />
<h1><a name="histopathology">Histopathology</a></h1>
<p>CaCORE::CaBIO::Histopathology - Perl extension for Histopathology.</p>
<p>
</p>
<h2><a name="abstract">ABSTRACT</a></h2>
<p>The CaCORE::CaBIO::Histopathology is a Perl object representation of the
CaCORE Histopathology object.</p>
<p>
</p>
<h2><a name="synopsis">SYNOPSIS</a></h2>
<p>See <a href="/CaCORE/ApplicationService.html">the CaCORE::ApplicationService manpage</a>.</p>
<p>
html/CaBIO.html view on Meta::CPAN
</li>
<dt><strong>Instance of <a href="#clinicaltrialprotocol">ClinicalTrialProtocol</a>:</strong>
<dd>
<p>One to many assoication, use <code>getClinicalTrialProtocolCollection</code> to get a collection of associated ClinicalTrialProtocol.</p>
</dd>
</li>
<dt><strong><a name="item_collection_of__2fdiseaseontology_3a">Collection of <a href="#diseaseontology">DiseaseOntology</a>:</a></strong>
<dd>
<p>Many to one assoication, use <code>getDiseaseOntology</code> to get the associated DiseaseOntology.</p>
</dd>
</li>
<dt><strong>Instance of <a href="#gene">Gene</a>:</strong>
<dd>
<p>One to many assoication, use <code>getGeneCollection</code> to get a collection of associated Gene.</p>
</dd>
</li>
<dt><strong>Instance of <a href="#library">Library</a>:</strong>
<dd>
<p>One to many assoication, use <code>getLibraryCollection</code> to get a collection of associated Library.</p>
</dd>
</li>
<dt><strong><a name="item_instance_of__2fmetastasis_3a">Instance of <a href="#metastasis">Metastasis</a>:</a></strong>
<dd>
<p>One to many assoication, use <code>getMetastasisCollection</code> to get a collection of associated Metastasis.</p>
</dd>
</li>
<dt><strong><a name="item_collection_of__2forganontology_3a">Collection of <a href="#organontology">OrganOntology</a>:</a></strong>
<dd>
<p>Many to one assoication, use <code>getOrganOntology</code> to get the associated OrganOntology.</p>
</dd>
</li>
</dl>
<p>
</p>
<hr />
<h1><a name="homologousassociation">HomologousAssociation</a></h1>
<p>CaCORE::CaBIO::HomologousAssociation - Perl extension for HomologousAssociation.</p>
<p>
</p>
<h2><a name="abstract">ABSTRACT</a></h2>
<p>The CaCORE::CaBIO::HomologousAssociation is a Perl object representation of the
CaCORE HomologousAssociation object.</p>
<p>
</p>
<h2><a name="synopsis">SYNOPSIS</a></h2>
<p>See <a href="/CaCORE/ApplicationService.html">the CaCORE::ApplicationService manpage</a>.</p>
<p>
</p>
<h2><a name="description">DESCRIPTION</a></h2>
<p>
</p>
<h2><a name="attributes_of_homologousassociation">ATTRIBUTES of HomologousAssociation</a></h2>
<p>The following are all the attributes of the HomologousAssociation object and their data types:</p>
<dl>
<dt><strong>bigid</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong><a name="item_homologousid">homologousId</a></strong>
<dd>
<p>data type: <code>long</code></p>
</dd>
</li>
<dt><strong>id</strong>
<dd>
<p>data type: <code>long</code></p>
</dd>
</li>
<dt><strong><a name="item_similaritypercentage">similarityPercentage</a></strong>
<dd>
<p>data type: <code>float</code></p>
</dd>
</li>
</dl>
<p>Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.</p>
<p>
</p>
<h2><a name="associations_of_homologousassociation">ASSOCIATIONS of HomologousAssociation</a></h2>
<p>The following are all the objects that are associated with the HomologousAssociation:</p>
<dl>
<dt><strong><a name="item_collection_of__2fhomologousgene_3a">Collection of <a href="#homologousgene">HomologousGene</a>:</a></strong>
<dd>
<p>Many to one assoication, use <code>getHomologousGene</code> to get the associated HomologousGene.</p>
</dd>
</li>
</dl>
<p>
</p>
<hr />
<h1><a name="library">Library</a></h1>
<p>CaCORE::CaBIO::Library - Perl extension for Library.</p>
<p>
</p>
<h2><a name="abstract">ABSTRACT</a></h2>
<p>The CaCORE::CaBIO::Library is a Perl object representation of the
CaCORE Library object.</p>
<p>
</p>
<h2><a name="synopsis">SYNOPSIS</a></h2>
<p>See <a href="/CaCORE/ApplicationService.html">the CaCORE::ApplicationService manpage</a>.</p>
<p>
</p>
<h2><a name="description">DESCRIPTION</a></h2>
<p>
</p>
<h2><a name="attributes_of_library">ATTRIBUTES of Library</a></h2>
<p>The following are all the attributes of the Library object and their data types:</p>
<dl>
<dt><strong>bigid</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong><a name="item_cloneproducer">cloneProducer</a></strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong><a name="item_clonevector">cloneVector</a></strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong><a name="item_clonevectortype">cloneVectorType</a></strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong><a name="item_clonestodate">clonesToDate</a></strong>
<dd>
<p>data type: <code>long</code></p>
</dd>
</li>
<dt><strong><a name="item_creationdate">creationDate</a></strong>
<dd>
<p>data type: <code>dateTime</code></p>
</dd>
</li>
<dt><strong>description</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong>id</strong>
<dd>
<p>data type: <code>long</code></p>
</dd>
</li>
<dt><strong><a name="item_keyword">keyword</a></strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong><a name="item_labhost">labHost</a></strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong>name</strong>
html/CaBIO.html view on Meta::CPAN
<dl>
<dt><strong><a name="item_collection_of__2fsnp_3a">Collection of <a href="#snp">SNP</a>:</a></strong>
<dd>
<p>Many to one assoication, use <code>getSNP</code> to get the associated SNP.</p>
</dd>
</li>
<dt><strong>Collection of <a href="#chromosome">Chromosome</a>:</strong>
<dd>
<p>Many to one assoication, use <code>getChromosome</code> to get the associated Chromosome.</p>
</dd>
</li>
<dt><strong>Collection of <a href="#gene">Gene</a>:</strong>
<dd>
<p>Many to one assoication, use <code>getGene</code> to get the associated Gene.</p>
</dd>
</li>
<dt><strong>Collection of <a href="#nucleicacidsequence">NucleicAcidSequence</a>:</strong>
<dd>
<p>Many to one assoication, use <code>getNucleicAcidSequence</code> to get the associated NucleicAcidSequence.</p>
</dd>
</li>
</dl>
<p>
</p>
<hr />
<h1><a name="nucleicacidsequence">NucleicAcidSequence</a></h1>
<p>CaCORE::CaBIO::NucleicAcidSequence - Perl extension for NucleicAcidSequence.</p>
<p>
</p>
<h2><a name="abstract">ABSTRACT</a></h2>
<p>The CaCORE::CaBIO::NucleicAcidSequence is a Perl object representation of the
CaCORE NucleicAcidSequence object.</p>
<p>
</p>
<h2><a name="synopsis">SYNOPSIS</a></h2>
<p>See <a href="/CaCORE/ApplicationService.html">the CaCORE::ApplicationService manpage</a>.</p>
<p>
</p>
<h2><a name="description">DESCRIPTION</a></h2>
<p>
</p>
<h2><a name="attributes_of_nucleicacidsequence">ATTRIBUTES of NucleicAcidSequence</a></h2>
<p>The following are all the attributes of the NucleicAcidSequence object and their data types:</p>
<dl>
<dt><strong><a name="item_accessionnumber">accessionNumber</a></strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong><a name="item_accessionnumberversion">accessionNumberVersion</a></strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong>bigid</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong>id</strong>
<dd>
<p>data type: <code>long</code></p>
</dd>
</li>
<dt><strong><a name="item_length">length</a></strong>
<dd>
<p>data type: <code>long</code></p>
</dd>
</li>
<dt><strong>type</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong><a name="item_value">value</a></strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
</dl>
<p>Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.</p>
<p>
</p>
<h2><a name="associations_of_nucleicacidsequence">ASSOCIATIONS of NucleicAcidSequence</a></h2>
<p>The following are all the objects that are associated with the NucleicAcidSequence:</p>
<dl>
<dt><strong><a name="item_collection_of__2fclonerelativelocation_3a">Collection of <a href="#clonerelativelocation">CloneRelativeLocation</a>:</a></strong>
<dd>
<p>Many to one assoication, use <code>getCloneRelativeLocation</code> to get the associated CloneRelativeLocation.</p>
</dd>
</li>
<dt><strong>Instance of <a href="#databasecrossreference">DatabaseCrossReference</a>:</strong>
<dd>
<p>One to many assoication, use <code>getDatabaseCrossReferenceCollection</code> to get a collection of associated DatabaseCrossReference.</p>
</dd>
</li>
<dt><strong>Instance of <a href="#gene">Gene</a>:</strong>
<dd>
<p>One to many assoication, use <code>getGeneCollection</code> to get a collection of associated Gene.</p>
</dd>
</li>
<dt><strong>Instance of <a href="#location">Location</a>:</strong>
<dd>
<p>One to many assoication, use <code>getLocationCollection</code> to get a collection of associated Location.</p>
</dd>
</li>
</dl>
<p>
</p>
<hr />
<h1><a name="organontology">OrganOntology</a></h1>
<p>CaCORE::CaBIO::OrganOntology - Perl extension for OrganOntology.</p>
<p>
</p>
<h2><a name="abstract">ABSTRACT</a></h2>
<p>The CaCORE::CaBIO::OrganOntology is a Perl object representation of the
CaCORE OrganOntology object.</p>
<p>
</p>
<h2><a name="synopsis">SYNOPSIS</a></h2>
<p>See <a href="/CaCORE/ApplicationService.html">the CaCORE::ApplicationService manpage</a>.</p>
<p>
</p>
<h2><a name="description">DESCRIPTION</a></h2>
<p>
</p>
<h2><a name="attributes_of_organontology">ATTRIBUTES of OrganOntology</a></h2>
<p>The following are all the attributes of the OrganOntology object and their data types:</p>
<dl>
<dt><strong>bigid</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong>id</strong>
<dd>
<p>data type: <code>long</code></p>
</dd>
</li>
<dt><strong>name</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
</dl>
<p>Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.</p>
<p>
</p>
<h2><a name="associations_of_organontology">ASSOCIATIONS of OrganOntology</a></h2>
<p>The following are all the objects that are associated with the OrganOntology:</p>
<dl>
<dt><strong>Instance of <a href="#anomaly">Anomaly</a>:</strong>
<dd>
<p>One to many assoication, use <code>getAnomalyCollection</code> to get a collection of associated Anomaly.</p>
</dd>
</li>
<dt><strong><a name="item_instance_of__2fchildorganontologyrelationship_3a">Instance of <a href="#childorganontologyrelationship">ChildOrganOntologyRelationship</a>:</a></strong>
<dd>
<p>One to many assoication, use <code>getChildOrganOntologyRelationshipCollection</code> to get a collection of associated ChildOrganOntologyRelationship.</p>
</dd>
</li>
<dt><strong>Instance of <a href="#gene">Gene</a>:</strong>
<dd>
<p>One to many assoication, use <code>getGeneCollection</code> to get a collection of associated Gene.</p>
</dd>
</li>
<dt><strong>Instance of <a href="#histopathology">Histopathology</a>:</strong>
<dd>
<p>One to many assoication, use <code>getHistopathologyCollection</code> to get a collection of associated Histopathology.</p>
</dd>
</li>
<dt><strong><a name="item_instance_of__2fparentorganontologyrelationship_3a">Instance of <a href="#parentorganontologyrelationship">ParentOrganOntologyRelationship</a>:</a></strong>
<dd>
<p>One to many assoication, use <code>getParentOrganOntologyRelationshipCollection</code> to get a collection of associated ParentOrganOntologyRelationship.</p>
</dd>
</li>
</dl>
<p>
</p>
<hr />
<h1><a name="organontologyrelationship">OrganOntologyRelationship</a></h1>
<p>CaCORE::CaBIO::OrganOntologyRelationship - Perl extension for OrganOntologyRelationship.</p>
<p>
</p>
<h2><a name="abstract">ABSTRACT</a></h2>
<p>The CaCORE::CaBIO::OrganOntologyRelationship is a Perl object representation of the
CaCORE OrganOntologyRelationship object.</p>
<p>
</p>
<h2><a name="synopsis">SYNOPSIS</a></h2>
<p>See <a href="/CaCORE/ApplicationService.html">the CaCORE::ApplicationService manpage</a>.</p>
<p>
</p>
<h2><a name="description">DESCRIPTION</a></h2>
<p>
</p>
<h2><a name="attributes_of_organontologyrelationship">ATTRIBUTES of OrganOntologyRelationship</a></h2>
<p>The following are all the attributes of the OrganOntologyRelationship object and their data types:</p>
<dl>
<dt><strong>bigid</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong>id</strong>
<dd>
<p>data type: <code>long</code></p>
</dd>
</li>
<dt><strong>type</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
</dl>
<p>Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.</p>
<p>
</p>
<h2><a name="associations_of_organontologyrelationship">ASSOCIATIONS of OrganOntologyRelationship</a></h2>
<p>The following are all the objects that are associated with the OrganOntologyRelationship:</p>
<dl>
<dt><strong><a name="item_collection_of__2fchildorganontology_3a">Collection of <a href="#childorganontology">ChildOrganOntology</a>:</a></strong>
<dd>
<p>Many to one assoication, use <code>getChildOrganOntology</code> to get the associated ChildOrganOntology.</p>
</dd>
</li>
<dt><strong><a name="item_collection_of__2fparentorganontology_3a">Collection of <a href="#parentorganontology">ParentOrganOntology</a>:</a></strong>
<dd>
<p>Many to one assoication, use <code>getParentOrganOntology</code> to get the associated ParentOrganOntology.</p>
</dd>
</li>
</dl>
<p>
</p>
<hr />
<h1><a name="pathway">Pathway</a></h1>
<p>CaCORE::CaBIO::Pathway - Perl extension for Pathway.</p>
<p>
</p>
<h2><a name="abstract">ABSTRACT</a></h2>
<p>The CaCORE::CaBIO::Pathway is a Perl object representation of the
CaCORE Pathway object.</p>
<p>
</p>
<h2><a name="synopsis">SYNOPSIS</a></h2>
<p>See <a href="/CaCORE/ApplicationService.html">the CaCORE::ApplicationService manpage</a>.</p>
<p>
</p>
<h2><a name="description">DESCRIPTION</a></h2>
<p>
</p>
<h2><a name="attributes_of_pathway">ATTRIBUTES of Pathway</a></h2>
<p>The following are all the attributes of the Pathway object and their data types:</p>
<dl>
<dt><strong>bigid</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong>description</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong><a name="item_diagram">diagram</a></strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong><a name="item_displayvalue">displayValue</a></strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong>id</strong>
<dd>
<p>data type: <code>long</code></p>
</dd>
</li>
<dt><strong>name</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
</dl>
<p>Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.</p>
<p>
</p>
<h2><a name="associations_of_pathway">ASSOCIATIONS of Pathway</a></h2>
<p>The following are all the objects that are associated with the Pathway:</p>
<dl>
<dt><strong>Instance of <a href="#gene">Gene</a>:</strong>
<dd>
<p>One to many assoication, use <code>getGeneCollection</code> to get a collection of associated Gene.</p>
</dd>
</li>
<dt><strong>Instance of <a href="#histopathology">Histopathology</a>:</strong>
<dd>
<p>One to many assoication, use <code>getHistopathologyCollection</code> to get a collection of associated Histopathology.</p>
</dd>
</li>
<dt><strong>Collection of <a href="#taxon">Taxon</a>:</strong>
<dd>
<p>Many to one assoication, use <code>getTaxon</code> to get the associated Taxon.</p>
html/CaBIO.html view on Meta::CPAN
<h2><a name="synopsis">SYNOPSIS</a></h2>
<p>See <a href="/CaCORE/ApplicationService.html">the CaCORE::ApplicationService manpage</a>.</p>
<p>
</p>
<h2><a name="description">DESCRIPTION</a></h2>
<p>
</p>
<h2><a name="attributes_of_physicallocation">ATTRIBUTES of PhysicalLocation</a></h2>
<p>The following are all the attributes of the PhysicalLocation object and their data types:</p>
<dl>
<dt><strong><a name="item_chromosomalendposition">chromosomalEndPosition</a></strong>
<dd>
<p>data type: <code>long</code></p>
</dd>
</li>
<dt><strong><a name="item_chromosomalstartposition">chromosomalStartPosition</a></strong>
<dd>
<p>data type: <code>long</code></p>
</dd>
</li>
</dl>
<p>Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.</p>
<p>
</p>
<h2><a name="associations_of_physicallocation">ASSOCIATIONS of PhysicalLocation</a></h2>
<p>The following are all the objects that are associated with the PhysicalLocation:</p>
<dl>
<dt><strong><a name="item_instance_of__2fcytoband_3a">Instance of <a href="#cytoband">Cytoband</a>:</a></strong>
<dd>
<p>One to many assoication, use <code>getCytobandCollection</code> to get a collection of associated Cytoband.</p>
</dd>
</li>
</dl>
<p>
</p>
<hr />
<h1><a name="populationfrequency">PopulationFrequency</a></h1>
<p>CaCORE::CaBIO::PopulationFrequency - Perl extension for PopulationFrequency.</p>
<p>
</p>
<h2><a name="abstract">ABSTRACT</a></h2>
<p>The CaCORE::CaBIO::PopulationFrequency is a Perl object representation of the
CaCORE PopulationFrequency object.</p>
<p>
</p>
<h2><a name="synopsis">SYNOPSIS</a></h2>
<p>See <a href="/CaCORE/ApplicationService.html">the CaCORE::ApplicationService manpage</a>.</p>
<p>
</p>
<h2><a name="description">DESCRIPTION</a></h2>
<p>
</p>
<h2><a name="attributes_of_populationfrequency">ATTRIBUTES of PopulationFrequency</a></h2>
<p>The following are all the attributes of the PopulationFrequency object and their data types:</p>
<dl>
<dt><strong>bigid</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong><a name="item_ethnicity">ethnicity</a></strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong>id</strong>
<dd>
<p>data type: <code>long</code></p>
</dd>
</li>
<dt><strong><a name="item_majorallele">majorAllele</a></strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong><a name="item_majorfrequency">majorFrequency</a></strong>
<dd>
<p>data type: <code>double</code></p>
</dd>
</li>
<dt><strong><a name="item_minorallele">minorAllele</a></strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong><a name="item_minorfrequency">minorFrequency</a></strong>
<dd>
<p>data type: <code>double</code></p>
</dd>
</li>
<dt><strong>type</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
</dl>
<p>Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.</p>
<p>
</p>
<h2><a name="associations_of_populationfrequency">ASSOCIATIONS of PopulationFrequency</a></h2>
<p>The following are all the objects that are associated with the PopulationFrequency:</p>
<dl>
<dt><strong>Collection of <a href="#snp">SNP</a>:</strong>
<dd>
<p>Many to one assoication, use <code>getSNP</code> to get the associated SNP.</p>
</dd>
</li>
</dl>
<p>
</p>
<hr />
<h1><a name="protein">Protein</a></h1>
<p>CaCORE::CaBIO::Protein - Perl extension for Protein.</p>
<p>
</p>
<h2><a name="abstract">ABSTRACT</a></h2>
<p>The CaCORE::CaBIO::Protein is a Perl object representation of the
CaCORE Protein object.</p>
<p>
</p>
<h2><a name="synopsis">SYNOPSIS</a></h2>
<p>See <a href="/CaCORE/ApplicationService.html">the CaCORE::ApplicationService manpage</a>.</p>
<p>
</p>
<h2><a name="description">DESCRIPTION</a></h2>
<p>
</p>
<h2><a name="attributes_of_protein">ATTRIBUTES of Protein</a></h2>
<p>The following are all the attributes of the Protein object and their data types:</p>
<dl>
<dt><strong>bigid</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong><a name="item_copyrightstatement">copyrightStatement</a></strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong>id</strong>
<dd>
<p>data type: <code>long</code></p>
</dd>
</li>
<dt><strong>name</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong><a name="item_primaryaccession">primaryAccession</a></strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong><a name="item_uniprotcode">uniProtCode</a></strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
</dl>
<p>Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.</p>
<p>
</p>
<h2><a name="associations_of_protein">ASSOCIATIONS of Protein</a></h2>
<p>The following are all the objects that are associated with the Protein:</p>
<dl>
<dt><strong>Instance of <a href="#gene">Gene</a>:</strong>
<dd>
<p>One to many assoication, use <code>getGeneCollection</code> to get a collection of associated Gene.</p>
</dd>
</li>
<dt><strong><a name="item_instance_of__2fkeywords_3a">Instance of <a href="#keywords">Keywords</a>:</a></strong>
<dd>
<p>One to many assoication, use <code>getKeywordsCollection</code> to get a collection of associated Keywords.</p>
</dd>
</li>
<dt><strong><a name="item_instance_of__2fproteinalias_3a">Instance of <a href="#proteinalias">ProteinAlias</a>:</a></strong>
<dd>
<p>One to many assoication, use <code>getProteinAliasCollection</code> to get a collection of associated ProteinAlias.</p>
</dd>
</li>
<dt><strong><a name="item_collection_of__2fproteinsequence_3a">Collection of <a href="#proteinsequence">ProteinSequence</a>:</a></strong>
<dd>
<p>Many to one assoication, use <code>getProteinSequence</code> to get the associated ProteinSequence.</p>
</dd>
</li>
<dt><strong><a name="item_instance_of__2fsecondaryaccession_3a">Instance of <a href="#secondaryaccession">SecondaryAccession</a>:</a></strong>
<dd>
<p>One to many assoication, use <code>getSecondaryAccessionCollection</code> to get a collection of associated SecondaryAccession.</p>
</dd>
</li>
<dt><strong>Instance of <a href="#taxon">Taxon</a>:</strong>
<dd>
<p>One to many assoication, use <code>getTaxonCollection</code> to get a collection of associated Taxon.</p>
</dd>
</li>
</dl>
<p>
</p>
<hr />
<h1><a name="proteinalias">ProteinAlias</a></h1>
<p>CaCORE::CaBIO::ProteinAlias - Perl extension for ProteinAlias.</p>
<p>
</p>
<h2><a name="abstract">ABSTRACT</a></h2>
<p>The CaCORE::CaBIO::ProteinAlias is a Perl object representation of the
CaCORE ProteinAlias object.</p>
<p>
</p>
<h2><a name="synopsis">SYNOPSIS</a></h2>
<p>See <a href="/CaCORE/ApplicationService.html">the CaCORE::ApplicationService manpage</a>.</p>
<p>
</p>
<h2><a name="description">DESCRIPTION</a></h2>
<p>
</p>
<h2><a name="attributes_of_proteinalias">ATTRIBUTES of ProteinAlias</a></h2>
<p>The following are all the attributes of the ProteinAlias object and their data types:</p>
<dl>
<dt><strong>bigid</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong>id</strong>
<dd>
<p>data type: <code>long</code></p>
</dd>
</li>
<dt><strong>name</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
</dl>
<p>Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.</p>
<p>
</p>
<h2><a name="associations_of_proteinalias">ASSOCIATIONS of ProteinAlias</a></h2>
<p>The following are all the objects that are associated with the ProteinAlias:</p>
<dl>
<dt><strong>Instance of <a href="#protein">Protein</a>:</strong>
<dd>
<p>One to many assoication, use <code>getProteinCollection</code> to get a collection of associated Protein.</p>
</dd>
</li>
</dl>
<p>
</p>
<hr />
<h1><a name="proteinsequence">ProteinSequence</a></h1>
<p>CaCORE::CaBIO::ProteinSequence - Perl extension for ProteinSequence.</p>
<p>
</p>
<h2><a name="abstract">ABSTRACT</a></h2>
<p>The CaCORE::CaBIO::ProteinSequence is a Perl object representation of the
CaCORE ProteinSequence object.</p>
<p>
</p>
<h2><a name="synopsis">SYNOPSIS</a></h2>
<p>See <a href="/CaCORE/ApplicationService.html">the CaCORE::ApplicationService manpage</a>.</p>
<p>
</p>
<h2><a name="description">DESCRIPTION</a></h2>
<p>
</p>
<h2><a name="attributes_of_proteinsequence">ATTRIBUTES of ProteinSequence</a></h2>
<p>The following are all the attributes of the ProteinSequence object and their data types:</p>
<dl>
<dt><strong>bigid</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong><a name="item_checksum">checkSum</a></strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong>id</strong>
<dd>
<p>data type: <code>long</code></p>
</dd>
</li>
<dt><strong>length</strong>
<dd>
<p>data type: <code>long</code></p>
</dd>
</li>
<dt><strong><a name="item_molecularweightindaltons">molecularWeightInDaltons</a></strong>
<dd>
<p>data type: <code>double</code></p>
</dd>
</li>
<dt><strong>value</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
</dl>
<p>Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.</p>
<p>
</p>
<h2><a name="associations_of_proteinsequence">ASSOCIATIONS of ProteinSequence</a></h2>
<p>The following are all the objects that are associated with the ProteinSequence:</p>
<dl>
<dt><strong><a name="item_collection_of__2fprotein_3a">Collection of <a href="#protein">Protein</a>:</a></strong>
<dd>
<p>Many to one assoication, use <code>getProtein</code> to get the associated Protein.</p>
</dd>
</li>
</dl>
<p>
</p>
<hr />
<h1><a name="protocol">Protocol</a></h1>
<p>CaCORE::CaBIO::Protocol - Perl extension for Protocol.</p>
<p>
</p>
<h2><a name="abstract">ABSTRACT</a></h2>
<p>The CaCORE::CaBIO::Protocol is a Perl object representation of the
CaCORE Protocol object.</p>
<p>
</p>
<h2><a name="synopsis">SYNOPSIS</a></h2>
<p>See <a href="/CaCORE/ApplicationService.html">the CaCORE::ApplicationService manpage</a>.</p>
<p>
</p>
<h2><a name="description">DESCRIPTION</a></h2>
<p>
</p>
<h2><a name="attributes_of_protocol">ATTRIBUTES of Protocol</a></h2>
<p>The following are all the attributes of the Protocol object and their data types:</p>
<dl>
<dt><strong>bigid</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong>description</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong>id</strong>
<dd>
<p>data type: <code>long</code></p>
</dd>
</li>
<dt><strong>name</strong>
<dd>
<p>data type: <code>string</code></p>
</dd>
</li>
<dt><strong>type</strong>
<dd>
<p>data type: <code>string</code>
</p>
</dd>
</li>
</dl>
<p>Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
</p>
<p>
</p>
<h2><a name="associations_of_protocol">ASSOCIATIONS of Protocol</a></h2>
<p>The following are all the objects that are associated with the Protocol:
</p>
<dl>
<dt><strong>Instance of <a href="#library">Library</a>:</strong>
<dd>
<p>One to many assoication, use <code>getLibraryCollection</code> to get a collection of associated Library.
</p>
</dd>
</li>
<dt><strong><a name="item_instance_of__2ftissue_3a">Instance of <a href="#tissue">Tissue</a>:</a></strong>
<dd>
<p>One to many assoication, use <code>getTissueCollection</code> to get a collection of associated Tissue.
</p>
</dd>
</li>
</dl>
<p>
</p>
<hr />
<h1><a name="protocolassociation">ProtocolAssociation</a></h1>
<p>CaCORE::CaBIO::ProtocolAssociation - Perl extension for ProtocolAssociation.
</p>
<p>
</p>
<h2><a name="abstract">ABSTRACT</a></h2>
<p>The CaCORE::CaBIO::ProtocolAssociation is a Perl object representation of the
CaCORE ProtocolAssociation object.
</p>
<p>
</p>
<h2><a name="synopsis">SYNOPSIS</a></h2>
<p>See <a href="/CaCORE/ApplicationService.html">the CaCORE::ApplicationService manpage</a>.
</p>
<p>
</p>
<h2><a name="description">DESCRIPTION</a></h2>
<p>
</p>
<h2><a name="attributes_of_protocolassociation">ATTRIBUTES of ProtocolAssociation</a></h2>
<p>The following are all the attributes of the ProtocolAssociation object and their data types:
</p>
<dl>
<dt><strong><a name="item_ctepname">CTEPNAME</a></strong>
<dd>
<p>data type: <code>string</code>
</p>
</dd>
</li>
<dt><strong><a name="item_imtcode">IMTCODE</a></strong>
<dd>
<p>data type: <code>long</code>
</p>
</dd>
</li>
<dt><strong>bigid</strong>
<dd>
<p>data type: <code>string</code>
</p>
</dd>
</li>
<dt><strong><a name="item_diseasecategory">diseaseCategory</a></strong>
<dd>
<p>data type: <code>string</code>
</p>
</dd>
</li>
<dt><strong><a name="item_diseasesubcategory">diseaseSubCategory</a></strong>
<dd>
<p>data type: <code>string</code>
</p>
</dd>
</li>
<dt><strong>id</strong>
<dd>
<p>data type: <code>long</code>
</p>
</dd>
</li>
</dl>
<p>Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
</p>
<p>
</p>
<h2><a name="associations_of_protocolassociation">ASSOCIATIONS of ProtocolAssociation</a></h2>
<p>The following are all the objects that are associated with the ProtocolAssociation:
</p>
<dl>
<dt><strong><a name="item_collection_of__2fclinicaltrialprotocol_3a">Collection of <a href="#clinicaltrialprotocol">ClinicalTrialProtocol</a>:</a></strong>
<dd>
<p>Many to one assoication, use <code>getClinicalTrialProtocol</code> to get the associated ClinicalTrialProtocol.
</p>
</dd>
</li>
<dt><strong>Collection of <a href="#diseaseontology">DiseaseOntology</a>:</strong>
<dd>
<p>Many to one assoication, use <code>getDiseaseOntology</code> to get the associated DiseaseOntology.
</p>
</dd>
</li>
</dl>
<p>
</p>
<hr />
<h1><a name="snp">SNP</a></h1>
<p>CaCORE::CaBIO::SNP - Perl extension for SNP.
</p>
<p>
</p>
<h2><a name="abstract">ABSTRACT</a></h2>
<p>The CaCORE::CaBIO::SNP is a Perl object representation of the
CaCORE SNP object.
</p>
<p>
</p>
<h2><a name="synopsis">SYNOPSIS</a></h2>
<p>See <a href="/CaCORE/ApplicationService.html">the CaCORE::ApplicationService manpage</a>.
</p>
<p>
</p>
<h2><a name="description">DESCRIPTION</a></h2>
<p>
</p>
<h2><a name="attributes_of_snp">ATTRIBUTES of SNP</a></h2>
<p>The following are all the attributes of the SNP object and their data types:
</p>
<dl>
<dt><strong><a name="item_dbsnpid">DBSNPID</a></strong>
<dd>
<p>data type: <code>string</code>
</p>
</dd>
</li>
<dt><strong><a name="item_allelea">alleleA</a></strong>
<dd>
<p>data type: <code>string</code>
</p>
</dd>
</li>
<dt><strong><a name="item_alleleb">alleleB</a></strong>
<dd>
<p>data type: <code>string</code>
</p>
</dd>
</li>
<dt><strong>bigid</strong>
<dd>
<p>data type: <code>string</code>
</p>
</dd>
</li>
<dt><strong>id</strong>
<dd>
<p>data type: <code>long</code>
</p>
</dd>
</li>
<dt><strong><a name="item_validationstatus">validationStatus</a></strong>
<dd>
<p>data type: <code>string</code>
</p>
</dd>
</li>
</dl>
<p>Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
</p>
<p>
</p>
<h2><a name="associations_of_snp">ASSOCIATIONS of SNP</a></h2>
<p>The following are all the objects that are associated with the SNP:
</p>
<dl>
<dt><strong>Instance of <a href="#databasecrossreference">DatabaseCrossReference</a>:</strong>
<dd>
<p>One to many assoication, use <code>getDatabaseCrossReferenceCollection</code> to get a collection of associated DatabaseCrossReference.
</p>
</dd>
</li>
<dt><strong>Instance of <a href="#generelativelocation">GeneRelativeLocation</a>:</strong>
<dd>
<p>One to many assoication, use <code>getGeneRelativeLocationCollection</code> to get a collection of associated GeneRelativeLocation.
</p>
</dd>
</li>
<dt><strong>Instance of <a href="#location">Location</a>:</strong>
<dd>
<p>One to many assoication, use <code>getLocationCollection</code> to get a collection of associated Location.
</p>
</dd>
</li>
<dt><strong><a name="item_instance_of__2fpopulationfrequency_3a">Instance of <a href="#populationfrequency">PopulationFrequency</a>:</a></strong>
<dd>
<p>One to many assoication, use <code>getPopulationFrequencyCollection</code> to get a collection of associated PopulationFrequency.
</p>
</dd>
</li>
</dl>
<p>
</p>
<hr />
<h1><a name="target">Target</a></h1>
<p>CaCORE::CaBIO::Target - Perl extension for Target.
</p>
<p>
</p>
<h2><a name="abstract">ABSTRACT</a></h2>
<p>The CaCORE::CaBIO::Target is a Perl object representation of the
CaCORE Target object.
</p>
<p>
</p>
<h2><a name="synopsis">SYNOPSIS</a></h2>
<p>See <a href="/CaCORE/ApplicationService.html">the CaCORE::ApplicationService manpage</a>.
</p>
<p>
</p>
<h2><a name="description">DESCRIPTION</a></h2>
<p>
</p>
<h2><a name="attributes_of_target">ATTRIBUTES of Target</a></h2>
<p>The following are all the attributes of the Target object and their data types:
</p>
<dl>
<dt><strong>bigid</strong>
<dd>
<p>data type: <code>string</code>
</p>
</dd>
</li>
<dt><strong>id</strong>
<dd>
<p>data type: <code>long</code>
</p>
</dd>
</li>
<dt><strong>name</strong>
<dd>
<p>data type: <code>string</code>
</p>
</dd>
</li>
<dt><strong>type</strong>
<dd>
<p>data type: <code>string</code>
</p>
</dd>
</li>
</dl>
<p>Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
</p>
<p>
</p>
<h2><a name="associations_of_target">ASSOCIATIONS of Target</a></h2>
<p>The following are all the objects that are associated with the Target:
</p>
<dl>
<dt><strong>Instance of <a href="#agent">Agent</a>:</strong>
<dd>
<p>One to many assoication, use <code>getAgentCollection</code> to get a collection of associated Agent.
</p>
</dd>
</li>
<dt><strong>Instance of <a href="#anomaly">Anomaly</a>:</strong>
<dd>
<p>One to many assoication, use <code>getAnomalyCollection</code> to get a collection of associated Anomaly.
</p>
</dd>
</li>
<dt><strong>Instance of <a href="#gene">Gene</a>:</strong>
<dd>
<p>One to many assoication, use <code>getGeneCollection</code> to get a collection of associated Gene.
</p>
</dd>
</li>
</dl>
<p>
</p>
<hr />
<h1><a name="taxon">Taxon</a></h1>
<p>CaCORE::CaBIO::Taxon - Perl extension for Taxon.
</p>
<p>
</p>
<h2><a name="abstract">ABSTRACT</a></h2>
<p>The CaCORE::CaBIO::Taxon is a Perl object representation of the
CaCORE Taxon object.
</p>
<p>
</p>
<h2><a name="synopsis">SYNOPSIS</a></h2>
<p>See <a href="/CaCORE/ApplicationService.html">the CaCORE::ApplicationService manpage</a>.
</p>
<p>
</p>
<h2><a name="description">DESCRIPTION</a></h2>
<p>
</p>
<h2><a name="attributes_of_taxon">ATTRIBUTES of Taxon</a></h2>
<p>The following are all the attributes of the Taxon object and their data types:
</p>
<dl>
<dt><strong><a name="item_abbreviation">abbreviation</a></strong>
<dd>
<p>data type: <code>string</code>
</p>
</dd>
</li>
<dt><strong>bigid</strong>
<dd>
<p>data type: <code>string</code>
</p>
</dd>
</li>
<dt><strong><a name="item_commonname">commonName</a></strong>
<dd>
<p>data type: <code>string</code>
</p>
</dd>
</li>
<dt><strong><a name="item_ethnicitystrain">ethnicityStrain</a></strong>
<dd>
<p>data type: <code>string</code>
</p>
</dd>
</li>
<dt><strong>id</strong>
<dd>
<p>data type: <code>long</code>
</p>
</dd>
</li>
<dt><strong><a name="item_scientificname">scientificName</a></strong>
<dd>
<p>data type: <code>string</code>
</p>
</dd>
</li>
</dl>
<p>Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
</p>
<p>
</p>
<h2><a name="associations_of_taxon">ASSOCIATIONS of Taxon</a></h2>
<p>The following are all the objects that are associated with the Taxon:
</p>
<dl>
<dt><strong><a name="item_instance_of__2fchromosome_3a">Instance of <a href="#chromosome">Chromosome</a>:</a></strong>
<dd>
<p>One to many assoication, use <code>getChromosomeCollection</code> to get a collection of associated Chromosome.
</p>
</dd>
</li>
html/CaBIO.html view on Meta::CPAN
<h2><a name="associations_of_tissue">ASSOCIATIONS of Tissue</a></h2>
<p>The following are all the objects that are associated with the Tissue:
</p>
<dl>
<dt><strong>Instance of <a href="#library">Library</a>:</strong>
<dd>
<p>One to many assoication, use <code>getLibraryCollection</code> to get a collection of associated Library.
</p>
</dd>
</li>
<dt><strong>Collection of <a href="#protocol">Protocol</a>:</strong>
<dd>
<p>Many to one assoication, use <code>getProtocol</code> to get the associated Protocol.
</p>
</dd>
</li>
<dt><strong>Collection of <a href="#taxon">Taxon</a>:</strong>
<dd>
<p>Many to one assoication, use <code>getTaxon</code> to get the associated Taxon.
</p>
</dd>
</li>
</dl>
<p>
</p>
<hr />
<h1><a name="vocabulary">Vocabulary</a></h1>
<p>CaCORE::CaBIO::Vocabulary - Perl extension for Vocabulary.
</p>
<p>
</p>
<h2><a name="abstract">ABSTRACT</a></h2>
<p>The CaCORE::CaBIO::Vocabulary is a Perl object representation of the
CaCORE Vocabulary object.
</p>
<p>
</p>
<h2><a name="synopsis">SYNOPSIS</a></h2>
<p>See <a href="/CaCORE/ApplicationService.html">the CaCORE::ApplicationService manpage</a>.
</p>
<p>
</p>
<h2><a name="description">DESCRIPTION</a></h2>
<p>
</p>
<h2><a name="attributes_of_vocabulary">ATTRIBUTES of Vocabulary</a></h2>
<p>The following are all the attributes of the Vocabulary object and their data types:
</p>
<dl>
<dt><strong>bigid</strong>
<dd>
<p>data type: <code>string</code>
</p>
</dd>
</li>
<dt><strong><a name="item_coreterm">coreTerm</a></strong>
<dd>
<p>data type: <code>string</code>
</p>
</dd>
</li>
<dt><strong><a name="item_generalterm">generalTerm</a></strong>
<dd>
<p>data type: <code>string</code>
</p>
</dd>
</li>
<dt><strong>id</strong>
<dd>
<p>data type: <code>long</code>
</p>
</dd>
</li>
</dl>
<p>Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
</p>
<p>
</p>
<h2><a name="associations_of_vocabulary">ASSOCIATIONS of Vocabulary</a></h2>
<p>The following are all the objects that are associated with the Vocabulary:
</p>
<dl>
<dt><strong>Instance of <a href="#anomaly">Anomaly</a>:</strong>
<dd>
<p>One to many assoication, use <code>getAnomalyCollection</code> to get a collection of associated Anomaly.
</p>
</dd>
</li>
</dl>
<p>
</p>
<hr />
<h1><a name="support">SUPPORT</a></h1>
<p>Please do not contact author directly. Send email to <a href="mailto:ncicb@pop.nci.nih.gov">ncicb@pop.nci.nih.gov</a> to request
support or report a bug.
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