App-GeoCancerPrognosticDatasetsRetriever
view release on metacpan or search on metacpan
data/bladder_cancer_GEO.txt view on Meta::CPAN
2. Genome-wide DNA methylation study in bladder cancer
(Submitter supplied) Methylation profiling in Bladder cancer : adjacent normal tissue vs bladder tumor tissue
Organism: Homo sapiens
Type: Methylation profiling by genome tiling array
Platform: GPL9767 18 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE171nnn/GSE171369/
Series Accession: GSE171369 ID: 200171369
3. Gene expression analysis of bladder cancer cell line, its BCG resistant and AR knockdown subline.
(Submitter supplied) BCG resistant and AR konckdown subline from UMUC3 were compared with the original cell line.
Organism: Homo sapiens
Type: Expression profiling by array
Platforms: GPL19251 GPL16686 10 Samples
FTP download: GEO (CEL, CHP) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE148nnn/GSE148322/
Series Accession: GSE148322 ID: 200148322
4. Nitazoxanide impairs mitophagy flux through ROS-mediated mitophagy initiation and lysosomal dysfunction in bladder cancer
(Submitter supplied) Bladder cancer is one of the most common malignancy in the urinary tract with high recurrence and drug resistance in clinics. Alternative treatments from existing drugs might be a promising strategy. Nitazoxanide (NTZ), an FDA-ap...
Organism: Homo sapiens
Type: Expression profiling by high throughput sequencing
Platform: GPL18573 2 Samples
FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE171nnn/GSE171129/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA718525
Series Accession: GSE171129 ID: 200171129
5. Activation of cGAS-STING signal to inhibit the proliferation of bladder cancer: the immune effect of cisplatin
(Submitter supplied) our findings indicated a cisplatin dependent cGAS-STING signal in bladder cancer. This signal could be enhanced by accumulation of dsDNA and chromatin dissociated cGAS and would finally recruit infiltration DCs and CD8+ T cells i...
Organism: Homo sapiens
Type: Expression profiling by high throughput sequencing
Platform: GPL16791 6 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE165nnn/GSE165767/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA697857
Series Accession: GSE165767 ID: 200165767
6. Trp53 mutation in Krt5-expressing basal cells facilitates the development of basal squamous-like invasive bladder cancer in the chemical carcinogenesis of mouse bladder
(Submitter supplied) We investigated the genetic characteristics of the mouse tumors. First, we investigated whether mouse BBN-induced bladder cancers displayed distinct gene expression profiles according to the cell of origin or pre-induced Trp53 mu...
Organism: Mus musculus
Type: Expression profiling by array
Platform: GPL21163 22 Samples
FTP download: GEO (GCT, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE147nnn/GSE147709/
Series Accession: GSE147709 ID: 200147709
7. Different gene expression profiles between de novo and progressive muscle invasive bladder cancer: prognostic implications
(Submitter supplied) INTRODUCTION: Progressive muscle-invasive bladder cancer (MIBC) has more aggressive behavior than de novo MIBC. This study aimed to ascertain the differences in gene expression profiles between both MIBC groups and to identify pr...
Organism: Homo sapiens
Type: Expression profiling by array
Platform: GPL14951 26 Samples
FTP download: GEO (TXT, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149582/
Series Accession: GSE149582 ID: 200149582
8. The Androgen Receptor Directly Regulates CD44 Expression in Androgen Sensitive Bladder Cancer
(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism: Homo sapiens
Type: Expression profiling by array; Genome binding/occupancy profiling by high throughput sequencing
Platforms: GPL15207 GPL16791 18 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE147nnn/GSE147940/
Series Accession: GSE147940 ID: 200147940
9. The Androgen Receptor Directly Regulates CD44 Expression in Androgen Sensitive Bladder Cancer [ChIP-seq]
(Submitter supplied) To study androgen receptor transcriptomic activation in the presence of androgen in bladder cancer cell lines. A uniquely derived AR expressing clone of the bladder cancer cell line UMUC3 was derived and validated prior to ChIP-...
Organism: Homo sapiens
Type: Genome binding/occupancy profiling by high throughput sequencing
Platform: GPL16791 12 Samples
FTP download: GEO (BED, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE147nnn/GSE147939/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA622581
Series Accession: GSE147939 ID: 200147939
10. The Androgen Receptor Directly Regulates CD44 Expression in Androgen Sensitive Bladder Cancer [gene expression]
(Submitter supplied) To study androgen receptor transcriptomic activation in the presence of androgen in bladder cancer cell lines. A uniquely derived AR expressing clone of the bladder cancer cell line UMUC3 was derived and validated prior to micro...
Organism: Homo sapiens
Type: Expression profiling by array
Platform: GPL15207 6 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE147nnn/GSE147938/
Series Accession: GSE147938 ID: 200147938
11. Genome-wide map of cohesin positions in RT112 bladder cancer cells
(Submitter supplied) Bladder cancer is one of the most common genitourinary malignancies worldwide. It is a heterogeneous disease at the clinical, pathological, and genetic levels. In an exome-sequencing study of bladder cancer, we identified genes...
Organism: Homo sapiens
Type: Genome binding/occupancy profiling by high throughput sequencing
Platform: GPL18573 7 Samples
FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE111nnn/GSE111913/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA438528
Series Accession: GSE111913 ID: 200111913
12. Expression profiling by RNA-seq for identifying genes associated with prognosis in non-muscle-invasive bladder cancer.
(Submitter supplied) Non-muscle-invasive bladder cancer (NMIBC) is clinically heterogeneous, and many NMIBC patients fail to respond to treatment and frequently experience disease relapse. We aim to identify a prognostic and predictive signature of t...
Organism: Homo sapiens
Type: Expression profiling by high throughput sequencing
Platform: GPL16791 32 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE163nnn/GSE163899/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA688091
Series Accession: GSE163899 ID: 200163899
13. Bacterial effect on gene expression
(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism: Homo sapiens; Mus musculus
Type: Expression profiling by array
Platforms: GPL13667 GPL11180 48 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE162nnn/GSE162253/
Series Accession: GSE162253 ID: 200162253
14. Expression data from mice bladder with MB49-induced cancer treated with Lon protease
(Submitter supplied) MYC has been named the quintessential oncogene and is deregulated in the majority of human cancers. Still, finding c-MYC inhibitors for therapeutic use has been problematic and MYC itself has long been viewed as “undruggableâ€...
Organism: Mus musculus
Type: Expression profiling by array
Platform: GPL11180 19 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE162nnn/GSE162251/
Series Accession: GSE162251 ID: 200162251
15. A bladder cancer patient-derived xenograft reflects aggressive growth dynamics in vivo and in organoids
(Submitter supplied) A MIBC patient with aggressive disease course was selected for ex vivo model establishment and growth dynamic studies. After standard neoadjuvant treatment with gemcitabine and cisplatin, cystectomy was performed, and excised uro...
Organism: Homo sapiens
Type: Expression profiling by high throughput sequencing
Platform: GPL16791 10 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE155nnn/GSE155007/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA648129
Series Accession: GSE155007 ID: 200155007
16. RNA-Seq of circHIPK3 knockdown (KD) samples in UMUC3 and J82
(Submitter supplied) We profile gene expression upon circHIPK3 KD in two bladder cancer cell lines UMUC3 and J82
Organism: Homo sapiens
Type: Expression profiling by high throughput sequencing
Platform: GPL18573 60 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE148nnn/GSE148824/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA625910
Series Accession: GSE148824 ID: 200148824
17. Transcriptomic Analysis Of Micropapillary High Grade T1 Urothelial Bladder Cancer
(Submitter supplied) Management of high-grade T1 (HGT1) micropapillary bladder cancer (MPBC) is controversial. An accurate genomic characterization might help predict outcome. We analyze the transcriptomic profile of MPBC in a clinically annotated HG...
data/bladder_cancer_GEO.txt view on Meta::CPAN
FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE37nnn/GSE37817/
Series Accession: GSE37817 ID: 200037817
268. DNA methylation and expression profiling study for bladder cancer [methylation]
(Submitter supplied) The DNA methylation patterns associated with the development and progression of cancer. The aim of the present study was to identify novel methylation markers that can discriminate between normal and Non-muscle-invasive bladder c...
Organism: Homo sapiens
Type: Methylation profiling by array
Platform: GPL8490 24 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE37nnn/GSE37816/
Series Accession: GSE37816 ID: 200037816
269. DNA methylation and expression profiling study for bladder cancer [gene expression]
(Submitter supplied) The DNA methylation patterns associated with the development and progression of cancer. The aim of the present study was to identify novel methylation markers that can discriminate between normal and Non-muscle-invasive bladder c...
Organism: Homo sapiens
Type: Expression profiling by array
Platform: GPL6102 24 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE37nnn/GSE37815/
Series Accession: GSE37815 ID: 200037815
270. The investigational Aurora kinase A inhibitor MLN8237 induces defects in cell viability and cell cycle progression in mouse bladder cancer cells in vitro and in vivo
(Submitter supplied) PURPOSE: Despite over 70,000 new cases of bladder cancer in the United States annually, patients with advanced disease have a poor prognosis due to limited treatment modalities. We evaluate the role of Aurora A, identified as an...
Organism: Homo sapiens
Type: Expression profiling by array
Platform: GPL9828 18 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE42nnn/GSE42089/
Series Accession: GSE42089 ID: 200042089
271. Identification of nine genomic regions of amplification in bladder cancer, correlation with stage, and potential prognositic and therapeutic value
(Submitter supplied) We sought to test the hypothesis that ascertainment of genome-wide copy number alterations in bladder cancer may have value for clinical management. We performed a genome wide analysis of 164 bladder cancer samples and 27 bladder...
Organism: Homo sapiens
Type: Genome variation profiling by SNP array
Platform: GPL13270 80 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE44nnn/GSE44323/
Series Accession: GSE44323 ID: 200044323
272. Downstream targets of ID1 transcription factor in Non-Small Cell Lung Carcinoma (NSCLC)
(Submitter supplied) ID-1, known as inhibitor of differentiation or a helix loop helix transcription factor which lack the basic DNA binding domain. It is known to bind to bHLH transcription factor and inhibit those bHLH to bind to the promoter thus ...
Organism: Homo sapiens
Type: Expression profiling by array
Platform: GPL570 10 Samples
FTP download: GEO (CEL, CHP) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE38nnn/GSE38944/
Series Accession: GSE38944 ID: 200038944
273. linc-UBC1 physically associates with polycomb repressive complex 2 (PRC2) and acts as a negative prognostic factor for lymph node metastasis and survival in bladder cancer
(Submitter supplied) To identify aberrantly expressed long intergenic noncoding RNAs (lincRNAs) in bladder cancer tissues compared with normal adjacent tissues, we have employed microarray expression profiling as a discovery platform to identify linc...
Organism: Homo sapiens
Type: Expression profiling by array
Platform: GPL14550 6 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE45nnn/GSE45184/
Series Accession: GSE45184 ID: 200045184
274. Transcriptional profiling of tumor-associated blood vessels in invasive bladder cancer
(Submitter supplied) Tumor-associated blood vessels differ from normal vessels at the morphological and molecular level. Proteins that are only present on tumor vessels may serve as biomarkers and as therapeutic targets for inhibition of angiogenesis...
Organism: Homo sapiens
Type: Expression profiling by array
Platform: GPL5175 10 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE41nnn/GSE41614/
Series Accession: GSE41614 ID: 200041614
275. Molecular Biomarker Signature for Bladder Cancer Detection
(Submitter supplied) In this study we applied differential gene expression analysis to exfoliated human urothelia obtained from patients of known bladder disease status. Selected targets from the microarray data were validated in an independent set o...
Organism: Homo sapiens
Type: Expression profiling by array
Platform: GPL570 92 Samples
FTP download: GEO (CEL, CHP) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE31nnn/GSE31189/
Series Accession: GSE31189 ID: 200031189
276. Transcriptome of normal, paracancerouse and cancerous bladder tissues based on RNA-Seq method
(Submitter supplied) In order to support our research of bladder cancer in human genome, we conducted massively parallel pyrosequencing of mRNAs (RNA-Seq) using normal, paracancerouse and cancerous human bladder tissues. We obtained a total of 30.0 m...
Organism: Homo sapiens
Type: Expression profiling by high throughput sequencing
Platform: GPL10999 3 Samples
FTP download: GEO (DIFF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE35nnn/GSE35178/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA150663
Series Accession: GSE35178 ID: 200035178
277. Gene expression analysis in bladder cancer cells lines
(Submitter supplied) We have previously characterized two groups of bladder cancer cell lines based on their dependence on Hedgehog signaling for survival. Here, we examined the global gene expression in these cells. By comparing the gene expression ...
Organism: Homo sapiens
Type: Expression profiling by array
Platform: GPL10558 12 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE28nnn/GSE28255/
Series Accession: GSE28255 ID: 200028255
278. Gene expression profiling of 19 bladder cancers from the University of Virginia
(Submitter supplied) Given the heterogeneity of disease evident from study of the presentation, histomorphology, disease course, and molecular lesions of bladder cancer, a cohort of 8 non-muscle invasive and 11 muscle invasive bladder cancers were pr...
Organism: Homo sapiens
Type: Expression profiling by array
Platform: GPL96 19 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE37nnn/GSE37317/
Series Accession: GSE37317 ID: 200037317
279. Gene expression signatures in a human bladder cancer cell line SW780 transfected with miR-137 precursor molecule
(Submitter supplied) To clarify the effect of miRNAs, we carried out a gene expression microarray analysis of SW780 cells transfected with a miR-137 precursor or a negative control. We found that 1,326 probe sets (1,016 unique genes) were downregula...
Organism: Homo sapiens
Type: Expression profiling by array
Platform: GPL13607 2 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE41nnn/GSE41760/
Series Accession: GSE41760 ID: 200041760
280. Identification of target genes of cancer-related microRNAs in human cancer
(Submitter supplied) To identify target genes of cancer-related microRNAs in human cancer, several cell lines (bladder cancer, prostate cancer, renal cell carcinoma, esophageal squamous cell carcinoma, and head and neck squamous cell carcinoma) were ...
Organism: Homo sapiens
Type: Expression profiling by array
Platforms: GPL10332 GPL13607 35 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE37nnn/GSE37119/
Series Accession: GSE37119 ID: 200037119
281. FGFR3-shRNA induced transcriptional changes in RT112 bladder cancer cells
(Submitter supplied) Aberrant activation of FGFR3 via overexpression or mutation is a frequent feature of bladder cancer; however, its molecular and cellular consequences and functional relevance to carcinogenesis are not well understood. In this st...
Organism: Homo sapiens
Type: Expression profiling by array
Dataset: GDS4454 Platform: GPL570 24 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE41nnn/GSE41035/
Series Accession: GSE41035 ID: 200041035
282. Fibroblast growth factor receptor 3 depletion effect on bladder cancer cell line RT112
Analysis of bladder cancer cell line RT112 subjected to doxycycline-inducible, shRNA knockdown of FGFR3. Knockdown of FGFR3 in RT112 cells significantly attenuates tumor growth in vitro and in vivo. Results provide insight into the molecular mechanis...
Organism: Homo sapiens
Type: Expression profiling by array, transformed count, 4 genotype/variation, 2 protocol sets
Platform: GPL570 Series: GSE41035 24 Samples
data/bladder_cancer_GEO.txt view on Meta::CPAN
Series Accession: GSE32535 ID: 200032535
289. Identification of a novel set of DNA methylation markers in bladder cancer using MBD-methylCap/seq and urine DNA screening in a Chinese population
(Submitter supplied) The aim of the present study was to identify novel DNA methylation markers in bladder cancer (BCa) through genome-wide profiling of bladder cancer cell lines and subsequent MSP screening in urine samples. Experimental Design: MBD...
Organism: Homo sapiens
Type: Methylation profiling by high throughput sequencing
Platform: GPL9052 2 Samples
FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE33nnn/GSE33839/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA148095
Series Accession: GSE33839 ID: 200033839
290. Discovery of genes regulated by the metastasis suppressor gene, RhoGDI2
(Submitter supplied) A number of studies find that metastasis suppressor proteins, including RhoGDI2, may function in part though controlling expression of genes regulating metastasis (reviewed in Smith and Theodorescu, Nature Reviews Cancer, 2009, P...
Organism: Homo sapiens
Type: Expression profiling by array
Dataset: GDS4455 Platform: GPL570 4 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE35nnn/GSE35014/
Series Accession: GSE35014 ID: 200035014
291. RhoGTP dissociation inhibitor 2 effect on UM-UC-3 bladder cancer cells
Analysis of UM-UC-3 bladder carcinoma cells (low RhoGDI2-expressing and highly metastatic) stably transfected with GFP-RhoGDI2. RhoGDI2 is a metastasis suppressor protein. Results provide insight into the molecular basis of RhoGD12-mediated blockage ...
Organism: Homo sapiens
Type: Expression profiling by array, transformed count, 2 genotype/variation sets
Platform: GPL570 Series: GSE35014 4 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/datasets/GDS4nnn/GDS4455/
DataSet Accession: GDS4455 ID: 4455
292. Whole genome expression data from human urinary bladder cancer
(Submitter supplied) At diagnosis approximately 75% of bladder urothelial carcinomas are non muscle invasive bladder cancers (Ta, T1 and Tis), 20% are muscle invasive bladder cancer (T2-T4) and 5% are already metastatic. Non muscle invasive bladder c...
Organism: Homo sapiens
Type: Expression profiling by array
Platform: GPL6244 8 Samples
FTP download: GEO (CEL, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE23nnn/GSE23732/
Series Accession: GSE23732 ID: 200023732
293. Genome-wide DNA methylation study in bladder cancer
(Submitter supplied) Genome-wide DNA methylation profiles were determined on a set of fresh 44 bladder cancer tissues using normal blood as control. DNA amplicons were prepared using Differential Methylation Hybridization (DMH) method, subsequently h...
Organism: Homo sapiens
Type: Methylation profiling by genome tiling array
Platform: GPL4126 44 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE35nnn/GSE35824/
Series Accession: GSE35824 ID: 200035824
294. Identification of target genes of cancer-related microRNAs in human cancer
(Submitter supplied) To identify target genes of oncogenic or tumor suppressive microRNAs in human cancer, several cell lines (bladder cancer, prostate cancer, renal cell carcinoma. lung squamous cell carcinoma and head and neck squamous cell carcino...
Organism: Homo sapiens
Type: Expression profiling by array
Platform: GPL10332 16 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE26nnn/GSE26032/
Series Accession: GSE26032 ID: 200026032
295. Identification of target genes of tumor suppressor microRNAs in human cancer
(Submitter supplied) To identify target genes of tumor suppressive microRNAs in human cancer, several cell lines (bladder cancer, prostate cancer, renal cell carcinoma, and head and neck squamous cell carcinoma) were subjected to Agilent whole genome...
Organism: Homo sapiens
Type: Expression profiling by array
Platforms: GPL4133 GPL10332 13 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE24nnn/GSE24782/
Series Accession: GSE24782 ID: 200024782
296. Combination of a novel gene expression signature with a clinical nomogram improves the prediction of survival in high-risk bladder cancer Â
(Submitter supplied) Urothelial carcinoma of the bladder is characterized by significant variability in clinical outcomes depending on stage and grade. The addition of molecular information may improve our understanding of such heterogeneity and enha...
Organism: Homo sapiens
Type: Expression profiling by array
Dataset: GDS4456 Platform: GPL570 93 Samples
FTP download: GEO (CEL, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE31nnn/GSE31684/
Series Accession: GSE31684 ID: 200031684
297. High-risk bladder cancer
Analysis of bladder cancer specimens from a high-risk population of patients who underwent radical cystectomy (Memorial Sloan-Kettering Cancer Center cohort). Results provide insight into the prediction of survival in high-risk urothelial carcinoma o...
Organism: Homo sapiens
Type: Expression profiling by array, transformed count, 2 disease state, 5 specimen sets
Platform: GPL570 Series: GSE31684 93 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/datasets/GDS4nnn/GDS4456/
DataSet Accession: GDS4456 ID: 4456
298. Gene expression study for effectiveness of nicotinamide using chemically-induced mouse bladder cancer model
(Submitter supplied) The objective of this study was to evaluate the efficacy of nicotinamide in a N-butyl-N-(4-hydroxybutyl)-nitrosamine (BBN)-induced urinary bladder cancer model in mice, and to identify through gene expression profiling the molecu...
Organism: Mus musculus
Type: Expression profiling by array
Platform: GPL6099 20 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE21nnn/GSE21636/
Series Accession: GSE21636 ID: 200021636
299. Integrated epigenome profiling of DNA methylation and gene expression in normal and malignant urothelial cells
(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism: Homo sapiens
Type: Expression profiling by array; Methylation profiling by genome tiling array
Platforms: GPL570 GPL9767 9 Samples
FTP download: GEO (CEL, TAR, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE31nnn/GSE31866/
Series Accession: GSE31866 ID: 200031866
300. Global methylation in normal and malignant urothelial cells
(Submitter supplied) We have created 5-methylcytosine profiles for normal and malignant urothelial cells.
Organism: Homo sapiens
Type: Methylation profiling by genome tiling array
Platform: GPL9767 6 Samples
FTP download: GEO (TAR, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE31nnn/GSE31865/
Series Accession: GSE31865 ID: 200031865
301. Epigenome profiling of repressive histone modifications, DNA methylation and gene expression in normal and malignant urothelial cells
(Submitter supplied) To gain a more depth knowledge of repressive epigenetic gene regulation in UCC, we have profiled H3K9m3 and H3K27m3 in normal and malignant urothelial cells. We matched these profiles to those 5-methylcytosine and gene expression...
Organism: Homo sapiens
Type: Expression profiling by array
Platform: GPL570 3 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE31nnn/GSE31864/
Series Accession: GSE31864 ID: 200031864
302. Integrated epigenome profiling of repressive histone modifications, DNA methylation and gene expression in normal and malignant urothelial cells [ChIP-Seq data]
(Submitter supplied) We profiled two repressive histone modifications (H3K9m3 and H3K27m3) using ChIP-Seq in normal urothelial cells and cell lines representing non-invasive and invasive tumors.
Organism: Homo sapiens
Type: Genome binding/occupancy profiling by high throughput sequencing
Platform: GPL9052 6 Samples
FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE31nnn/GSE31125/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA144937
Series Accession: GSE31125 ID: 200031125
303. Transcriptomes of human bladder cells and cells in bladder cancer
(Submitter supplied) Characterization of the gene expression profiles of specific cell populations of the human urinary bladder provides an important set of research tools for the study of cellular differentiation and the cancer process. The transcri...
Organism: Homo sapiens
Type: Expression profiling by array
Platform: GPL570 17 Samples
data/bladder_cancer_GEO.txt view on Meta::CPAN
Series Accession: GSE22380 ID: 200022380
307. Large scale screening for known fusion genes in cancer cell lines
(Submitter supplied) We have utilized a version 2.0 of our Fusion gene microarray (version 1.0 described by PMID: 19152679 and GEO, GPL8078) to screen cancer cell lines for known fusion genes We assembled a comprehensive database of published fusion ...
Organism: Homo sapiens
Type: Expression profiling by array; Genome variation profiling by array
Platform: GPL11054 67 Samples
FTP download: GEO (PAIR) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE24nnn/GSE24737/
Series Accession: GSE24737 ID: 200024737
308. Analysis of transcriptome in ectopic versus orthotopic thyroid tissue.
(Submitter supplied) Congenital hypothyroidism from thyroid dysgenesis (CHTD) is a sporadic disease characterized by defects in the differentiation, migration or growth of thyroid tissue. Of these defects, incomplete migration resulting in ectopic th...
Organism: Homo sapiens
Type: Expression profiling by array
Platform: GPL6254 8 Samples
FTP download: GEO (GPR) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE16nnn/GSE16804/
Series Accession: GSE16804 ID: 200016804
309. Time course for bladder UCC development in UPII-SV40Tag mice
(Submitter supplied) We have identified genes that are differentially expressed between the bladders of UPII-SV40Tag mice and their age-matched wild-type littermates at 3, 6, 20, and 30 weeks of age. These are ages that correspond to premalignant, ca...
Organism: Mus musculus
Type: Expression profiling by array
Dataset: GDS3887 Platform: GPL1261 15 Samples
FTP download: GEO (CEL, CHP) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE23nnn/GSE23845/
Series Accession: GSE23845 ID: 200023845
310. Uroplakin II promoter-SV40Tag transgenic model for invasive bladder cancer: time course
Analysis of urothelium from UPII-SV40Tag transgenics at 3, 6, 20, 30 weeks of age, corresponding to premalignant, carcinoma in situ, early and later stage invasive transitional cell carcinoma of the bladder (TCC), respectively. Results provide insigh...
Organism: Mus musculus
Type: Expression profiling by array, count, 4 age, 2 genotype/variation sets
Platform: GPL1261 Series: GSE23845 15 Samples
FTP download: GEO (CEL, CHP) ftp://ftp.ncbi.nlm.nih.gov/geo/datasets/GDS3nnn/GDS3887/
DataSet Accession: GDS3887 ID: 3887
311. H2A.Z Mapping During G0/G1 and Mitosis
(Submitter supplied) We report genome wide mapping of the histone variant H2A.Z during G0/G1 and mitosis in T24 bladder cancer cells. The results show that the broad enrichment pattern of H2A.Z near transcription start sites of active genes is maint...
Organism: Homo sapiens
Type: Genome binding/occupancy profiling by high throughput sequencing
Platform: GPL9115 4 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE19nnn/GSE19568/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA122475
Series Accession: GSE19568 ID: 200019568
312. Subtype classification, grading, and outcome prediction of urothelial carcinomas by combined mRNA profiling and aCGH
(Submitter supplied) [original title] Combined gene expression and genomic profiling define two intrinsic molecular subtypes of urothelial carcinoma and gene signatures for molecular grading and outcome. In the present investigation we sought to ref...
Organism: Homo sapiens
Type: Expression profiling by array; Genome variation profiling by genome tiling array
Platforms: GPL4723 GPL3883 GPL5186 285 Samples
FTP download: GEO (GPR, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE19nnn/GSE19915/
Series Accession: GSE19915 ID: 200019915
313. Discovery of microRNAs and other small RNAs in solid human tumors
(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism: Homo sapiens
Type: Non-coding RNA profiling by array; Non-coding RNA profiling by high throughput sequencing
Platforms: GPL10067 GPL9186 40 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE20nnn/GSE20418/
Series Accession: GSE20418 ID: 200020418
314. Discovery of microRNAs and other small RNAs in solid human tumors: sequencing
(Submitter supplied) MicroRNAs (miRNAs) are ~22 nucleotide-long, non-coding RNAs that regulate gene silencing. It is known that many human miRNAs are deregulated in numerous types of tumors. Here we report the sequencing of small RNAs from 23 breast,...
Organism: Homo sapiens
Type: Non-coding RNA profiling by high throughput sequencing
Platform: GPL9186 2 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE20nnn/GSE20417/
Series Accession: GSE20417 ID: 200020417
315. Predective Value of Prognosis-Related Gene Expression Study in Primary Bladder Cancer
(Submitter supplied) This study aimed to identify the genetic signatures associated with disease prognosis in bladder cancer. We used 165 primary bladder cancer samples, 23 recurrent non-muscle invasive tumor tissues, 58 normal looking bladder mucosa...
Organism: Homo sapiens
Type: Expression profiling by array
Platform: GPL6102 256 Samples
FTP download: GEO (TXT, XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE13nnn/GSE13507/
Series Accession: GSE13507 ID: 200013507
316. Predictive Gene Signatures as Strong Prognostic Indicators of the Effectiveness of BCG Immunotherapy
(Submitter supplied) Full title: Predictive Gene Signatures as Strong Prognostic Indicators of the Effectiveness of Bacillus Calmette–Guérin (BCG) Immunotherapy in Primary pT1 Bladder Cancers Intravesical BCG immunotherapy is effective in preventi...
Organism: Homo sapiens
Type: Expression profiling by array
Platform: GPL6102 48 Samples
FTP download: GEO (TXT, XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE19nnn/GSE19423/
Series Accession: GSE19423 ID: 200019423
317. Identification of miR-145 or miR-133a target genes in bladder cancer
(Submitter supplied) We recently identified a subset of down-regulated miRNAs such as miR-145 and miR-133a in bladder cancer. Cell growth inhibitions occurred in miR-145 and miR-133a transfectants compared with the controls, suggesting that both miRN...
Organism: Homo sapiens
Type: Expression profiling by array
Platform: GPL4133 4 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE19nnn/GSE19717/
Series Accession: GSE19717 ID: 200019717
318. Gene expression profiles of bladder cancer cell lines
(Submitter supplied) Bladder cancer is among the five most common malignancies worldwide, and it is the second most common tumor of the genitourinary tract and the second most common cause of death in patients with genitourinary tract malignancies. T...
Organism: Homo sapiens
Type: Expression profiling by array
Platform: GPL4133 5 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE19nnn/GSE19716/
Series Accession: GSE19716 ID: 200019716
319. Chromosomal aberrations of human bladder cancer cell lines
(Submitter supplied) In order to identify putative targets in human bladder cancer (BC) cell lines, a survey of parallel chromosomal alterations and gene expression studies in 5 BC cell lines were performed using array-CGH and microarray techniques. ...
Organism: Homo sapiens
Type: Genome variation profiling by genome tiling array
Platform: GPL4091 5 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE19nnn/GSE19714/
Series Accession: GSE19714 ID: 200019714
320. Identification of LY6K target genes in bladder cancer
(Submitter supplied) Five bladder cancer (BC) cell lines were subjected to high-resolution array comparative genomic hybridization (CGH), which contained about 244,000 probes. The focus was on the typical gain locus of 8q24.3, which has not been stud...
Organism: Homo sapiens
Type: Expression profiling by array
Platform: GPL4133 1 Sample
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE19nnn/GSE19712/
Series Accession: GSE19712 ID: 200019712
321. DNA methylation distinguishes pathologically normal human tissues
(Submitter supplied) Epigenetic control of gene transcription is critical for normal human development and cellular differentiation. While alterations of epigenetic marks such as DNA methylation have been linked to cancers and many other human diseas...
Organism: Homo sapiens
Type: Methylation profiling by array
Platform: GPL9183 217 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE19nnn/GSE19434/
data/bladder_cancer_GEO.txt view on Meta::CPAN
FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE5nnn/GSE5845/
Series Accession: GSE5845 ID: 200005845
323. microRNA-101 represses EZH2 in cancer
(Submitter supplied) To determine the phenotypic overlap between restoring miR-101 expression in bladder cancer cells and knocking down EZH2.
Organism: Homo sapiens
Type: Expression profiling by array
Platform: GPL5799 12 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE13nnn/GSE13674/
Series Accession: GSE13674 ID: 200013674
324. J82 human bladder cell line treated with frankincense oil
(Submitter supplied) Frankincense oil is prepared from aromatic hardened wood resin obtained by tapping Boswellia trees. For thousands of years, it has been important both socially and economically as an ingredient in incense and perfumes. Frankinc...
Organism: Homo sapiens
Type: Expression profiling by array
Platform: GPL6883 5 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE14nnn/GSE14002/
Series Accession: GSE14002 ID: 200014002
325. Array Comparative Genomic Hybridization of Merkel Cell Carcinoma Tumors
(Submitter supplied) Array-CGH profiles of Merkel cell carcinoma tumors Keywords: fresh frozen and formalin fixed paraffin embedded primary tumor, nodal and metastasis merkel cell carcinoma tumor samples
Organism: Homo sapiens
Type: Genome variation profiling by genome tiling array
Platform: GPL2879 25 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE13nnn/GSE13239/
Series Accession: GSE13239 ID: 200013239
326. Gene expression analysis of whole blood samples from patients with single and double primary tumors and healthy controls
(Submitter supplied) RNA samples from the blood of patients with double tumors, single tumors and from healthy control subjects are studied by gene expression analysis using the whole genome microarray platform AB1700 from Applied Biosystems. Gene...
Organism: Homo sapiens
Type: Expression profiling by array
Platform: GPL2986 62 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE11nnn/GSE11545/
Series Accession: GSE11545 ID: 200011545
327. Comparison of Normal Prostate Fibroblasts Overexpressing Cyclin D1 and Carcinoma Associated Fibroblasts
(Submitter supplied) The cyclin D1 oncogene encodes the regulatory subunit of a holoenzyme that phosphorylates and inactivates the Rb protein and promotes progression through G1 to S phase of the cell cycle. Several prostate cancer cell lines and a s...
Organism: Homo sapiens
Type: Expression profiling by array
Platform: GPL4768 4 Samples
FTP download: GEO (GPR) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE6nnn/GSE6936/
Series Accession: GSE6936 ID: 200006936
328. Prediction of response and survival following chemotherapy in patients with advanced bladder cancer
(Submitter supplied) BACKGROUND Cisplatin-containing chemotherapy is the standard of care for patients with locally advanced and metastatic transitional cell carcinoma of the urothelium. The response rate is around 50% and tumor derived molecular pr...
Organism: Homo sapiens
Type: Expression profiling by array
Platform: GPL96 30 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE5nnn/GSE5287/
Series Accession: GSE5287 ID: 200005287
329. Analysis of clinical bladder cancer classification according to microarray expression profiles
(Submitter supplied) Using Affymetrix microarray technology we analyzed the gene expression profiles of the most important pathological categories of bladder cancer in order to detect potential marker genes. Applying an unsupervised cluster algorithm...
Organism: Homo sapiens
Type: Expression profiling by array
Platform: GPL570 12 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE7nnn/GSE7476/
Series Accession: GSE7476 ID: 200007476
330. Gene expression signatures predict outcome in non-muscle invasive bladder carcinoma - a multi-center validation study
(Submitter supplied) Background Clinically useful molecular markers predicting the clinical course of patients diagnosed with non-muscle invasive bladder cancer are needed to improve treatment outcome. Methods We used custom designed oligonucleotide ...
Organism: Homo sapiens
Type: Expression profiling by array
Platform: GPL4060 808 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE5nnn/GSE5479/
Series Accession: GSE5479 ID: 200005479
331. Molecular Features of Hormone-Refractory Prostate Cancer Cells by Genome-wide Gene-expression Profiles
(Submitter supplied) To characterize the molecular features of clinical (Hormone-Refractory Prostate Cancers) HRPCs, we generated the precise gene-expression profiles of 25 clinical HRPCs and 10 hormone-sensitive prostate cancers (HSPCs) by genome-wi...
Organism: Homo sapiens
Type: Expression profiling by array
Platform: GPL4747 35 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE6nnn/GSE6811/
Series Accession: GSE6811 ID: 200006811
332. Role of E2F3 expression in human bladder and prostate cancer cells
(Submitter supplied) Amplification and overexpression of the E2F3 gene at 6p22 in human bladder cancer is associated with increased tumour stage, grade and proliferation index, and in prostate cancer E2F3 overexpression is linked to tumour aggres...
Organism: Homo sapiens
Type: Expression profiling by array
Platform: GPL3904 3 Samples
FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE6nnn/GSE6131/
Series Accession: GSE6131 ID: 200006131
333. Amplification and overexpression of E2F3 in human bladder cancer.
(Submitter supplied) We demonstrate that, in human bladder cancer, amplification of the E2F3 gene, located at 6p22, is associated with overexpression of its encoded mRNA transcripts and high levels of expression of E2F3 protein. Immunohistochemical a...
Organism: Homo sapiens
Type: Genome variation profiling by array
Platforms: GPL4483 GPL4482 GPL3898 10 Samples
FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE6nnn/GSE6123/
Series Accession: GSE6123 ID: 200006123
334. Classification of carcinoma in situ lesions in human bladder cancer
(Submitter supplied) The presence of carcinoma in situ (CIS) lesions in the urinary bladder is associated with a high risk of disease progression to a muscle invasive stage. In this study, we used microarray expression profiling to examine the gene e...
Organism: Homo sapiens
Type: Expression profiling by array
Dataset: GDS1479 Platform: GPL96 60 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE3nnn/GSE3167/
Series Accession: GSE3167 ID: 200003167
335. Carcinoma in situ lesions of the urinary bladder
Analysis of bladder biopsies of superficial transitional cell carcinomas with or without surrounding carcinoma in situ (CIS) lesions and muscle invasive carcinomas (mTCC). CIS is a common mTCC precursor. Results provide insight into which tumors in e...
Organism: Homo sapiens
Type: Expression profiling by array, count, 6 specimen sets
Platform: GPL96 Series: GSE3167 60 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/datasets/GDS1nnn/GDS1479/
DataSet Accession: GDS1479 ID: 1479
336. Partially degraded RNA from bladder washing is a suitable sample for studying gene expression profiles of bladder cancer
(Submitter supplied) The aims of this study were to determine the impact of different levels of RNA degradation as well as to ascertain if the gene expression profiles obtained from bladder washing correlates to that obtained from the related bladder...
Organism: Homo sapiens
Type: Expression profiling by array
Platform: GPL2767 16 Samples
FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE3nnn/GSE3192/
Series Accession: GSE3192 ID: 200003192
337. Bladder cancer cells
(Submitter supplied) Examination of gene expression in several bladder cancer cell lines grown on either plastic, SIS (small intestine submucosa) gel or matrigel. A data table of normalized values is appended below. Data were normalized as described...
Organism: Homo sapiens
Type: Expression profiling by array
Platform: GPL131 36 Samples
FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSEnnn/GSE796/
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