App-GeoCancerPrognosticDatasetsRetriever

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data/bladder_cancer_GEO.txt  view on Meta::CPAN

FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE6nnn/GSE6123/
Series		Accession: GSE6123	ID: 200006123

334. Classification of carcinoma in situ lesions in human bladder cancer
(Submitter supplied) The presence of carcinoma in situ (CIS) lesions in the urinary bladder is associated with a high risk of disease progression to a muscle invasive stage. In this study, we used microarray expression profiling to examine the gene e...
Organism:	Homo sapiens
Type:		Expression profiling by array
Dataset: GDS1479 Platform: GPL96 60 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE3nnn/GSE3167/
Series		Accession: GSE3167	ID: 200003167

335. Carcinoma in situ lesions of the urinary bladder
Analysis of bladder biopsies of superficial transitional cell carcinomas with or without surrounding carcinoma in situ (CIS) lesions and muscle invasive carcinomas (mTCC). CIS is a common mTCC precursor. Results provide insight into which tumors in e...
Organism:	Homo sapiens
Type:		Expression profiling by array, count, 6 specimen sets
Platform: GPL96 Series: GSE3167 60 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/datasets/GDS1nnn/GDS1479/
DataSet		Accession: GDS1479	ID: 1479

336. Partially degraded RNA from bladder washing is a suitable sample for studying gene expression profiles of bladder cancer
(Submitter supplied) The aims of this study were to determine the impact of different levels of RNA degradation as well as to ascertain if the gene expression profiles obtained from bladder washing correlates to that obtained from the related bladder...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL2767 16 Samples
FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE3nnn/GSE3192/
Series		Accession: GSE3192	ID: 200003192

337. Bladder cancer cells
(Submitter supplied) Examination of gene expression in several bladder cancer cell lines grown on either plastic, SIS (small intestine submucosa) gel or matrigel. A data table of normalized values is appended below.  Data were normalized as described...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL131 36 Samples
FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSEnnn/GSE796/
Series		Accession: GSE796	ID: 200000796

338. Bladder tumour stage classification
(Submitter supplied) Bladder tumours used to construct a tumour stage classifier Keywords = bladder cancer, disease stages, classification Keywords: other
Organism:	Homo sapiens
Type:		Expression profiling by array
Dataset: GDS183 Platform: GPL80 40 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSEnnn/GSE89/
Series		Accession: GSE89	ID: 200000089

339. Bladder tumour recurrence prediction
(Submitter supplied) Expression profiling of superficial bladder tumours to delineate the expression pattern differences between non-recurring and recurring tumours. Keywords = bladder cancer, superficial, recurrence, prediction Keywords: other
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL80 31 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSEnnn/GSE88/
Series		Accession: GSE88	ID: 200000088

340. Bladder tumor stage classification
Identification of clinically relevant subclasses of bladder carcinoma. Three major stages identified, Ta, T1 and T2-4. Ta tumors further classified into subgroups. A 32-gene molecular classifier was built.      
Organism:	Homo sapiens
Type:		Expression profiling by array, count, 3 disease state, 4 tissue sets
Platform: GPL80 Series: GSE89 40 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/datasets/GDSnnn/GDS183/
DataSet		Accession: GDS183	ID: 183

341. [Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array
(Submitter supplied) Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html  June 03, 2009: annotation table updated with netaffx build 28 June 07, 20...
Organism:	Mus musculus
601 DataSets 4393 Series 40 Related Platforms 57112 Samples
FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/platforms/GPL1nnn/GPL1261/
Platform	Accession: GPL1261	ID: 100001261

342. [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array
(Submitter supplied) Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html  June 03, 2009: annotation table updated with netaffx build 28 June 06, 20...
Organism:	Homo sapiens
602 DataSets 5421 Series 61 Related Platforms 161817 Samples
FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/platforms/GPLnnn/GPL570/
Platform	Accession: GPL570	ID: 100000570

343. [HG-U133A] Affymetrix Human Genome U133A Array
(Submitter supplied) Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html  June 03, 2009: annotation table updated with netaffx build 28 June 08, 20...
Organism:	Homo sapiens
364 DataSets 1121 Series 11 Related Platforms 42179 Samples
FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/platforms/GPLnnn/GPL96/
Platform	Accession: GPL96	ID: 100000096

344. [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [transcript (gene) version]
(Submitter supplied) Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html  June 03, 2009: annotation table updated with netaffx build 28 June 18, 20...
Organism:	Homo sapiens
136 DataSets 1799 Series 26 Related Platforms 37103 Samples
FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/platforms/GPL6nnn/GPL6244/
Platform	Accession: GPL6244	ID: 100006244

345. Illumina HumanHT-12 V4.0 expression beadchip
(Submitter supplied) The HumanHT-12 v4 Expression BeadChip provides high throughput processing of 12 samples per BeadChip without the need for expensive, specialized automation. The BeadChip is designed to support flexible usage across a wide-spectru...
Organism:	Homo sapiens
51 DataSets 2760 Series 4 Related Platforms 97140 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/platforms/GPL10nnn/GPL10558/
Platform	Accession: GPL10558	ID: 100010558

346. CRD vs 10426T
Organism:	Homo sapiens
Source name:	CRD(common reference DNA) (channel 1) 10426T (channel 2)
Platform: GPL9767 Series: GSE171369 
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5224nnn/GSM5224602/
Sample		Accession: GSM5224602	ID: 305224602

347. CRD vs 10354T
Organism:	Homo sapiens
Source name:	CRD(common reference DNA) (channel 1) 10354T (channel 2)
Platform: GPL9767 Series: GSE171369 
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5224nnn/GSM5224601/
Sample		Accession: GSM5224601	ID: 305224601

348. CRD vs 10171T
Organism:	Homo sapiens
Source name:	CRD(common reference DNA) (channel 1) 10171T (channel 2)
Platform: GPL9767 Series: GSE171369 
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5224nnn/GSM5224600/
Sample		Accession: GSM5224600	ID: 305224600

349. CRD vs J5BZ10T
Organism:	Homo sapiens
Source name:	CRD(common reference DNA) (channel 1) J5BZ10T (channel 2)
Platform: GPL9767 Series: GSE171369 
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5224nnn/GSM5224599/
Sample		Accession: GSM5224599	ID: 305224599

350. CRD vs 4415T
Organism:	Homo sapiens
Source name:	CRD(common reference DNA) (channel 1) 4415T (channel 2)
Platform: GPL9767 Series: GSE171369 
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5224nnn/GSM5224598/
Sample		Accession: GSM5224598	ID: 305224598

351. CRD vs 3770T
Organism:	Homo sapiens
Source name:	CRD(common reference DNA) (channel 1) 3770T (channel 2)
Platform: GPL9767 Series: GSE171369 
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5224nnn/GSM5224597/
Sample		Accession: GSM5224597	ID: 305224597

352. CRD vs 4363T
Organism:	Homo sapiens
Source name:	CRD(common reference DNA) (channel 1) 4363T (channel 2)
Platform: GPL9767 Series: GSE171369 
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5224nnn/GSM5224596/
Sample		Accession: GSM5224596	ID: 305224596

353. CRD vs 4385T
Organism:	Homo sapiens
Source name:	CRD(common reference DNA) (channel 1) 4385T (channel 2)
Platform: GPL9767 Series: GSE171369 
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5224nnn/GSM5224595/
Sample		Accession: GSM5224595	ID: 305224595



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