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data/bladder_cancer_GEO.txt  view on Meta::CPAN

FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE44nnn/GSE44323/
Series		Accession: GSE44323	ID: 200044323

272. Downstream targets of ID1 transcription factor in Non-Small Cell Lung Carcinoma (NSCLC)
(Submitter supplied) ID-1, known as inhibitor of differentiation or a helix loop helix transcription factor which lack the basic DNA binding domain. It is known to bind to bHLH transcription factor and inhibit those bHLH to bind to the promoter thus ...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL570 10 Samples
FTP download: GEO (CEL, CHP) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE38nnn/GSE38944/
Series		Accession: GSE38944	ID: 200038944

273. linc-UBC1 physically associates with polycomb repressive complex 2 (PRC2) and acts as a negative prognostic factor for lymph node metastasis and survival in bladder cancer
(Submitter supplied) To identify aberrantly expressed long intergenic noncoding RNAs (lincRNAs) in bladder cancer tissues compared with normal adjacent tissues, we have employed microarray expression profiling as a discovery platform to identify linc...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL14550 6 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE45nnn/GSE45184/
Series		Accession: GSE45184	ID: 200045184

274. Transcriptional profiling of tumor-associated blood vessels in invasive bladder cancer
(Submitter supplied) Tumor-associated blood vessels differ from normal vessels at the morphological and molecular level. Proteins that are only present on tumor vessels may serve as biomarkers and as therapeutic targets for inhibition of angiogenesis...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL5175 10 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE41nnn/GSE41614/
Series		Accession: GSE41614	ID: 200041614

275. Molecular Biomarker Signature for Bladder Cancer Detection
(Submitter supplied) In this study we applied differential gene expression analysis to exfoliated human urothelia obtained from patients of known bladder disease status. Selected targets from the microarray data were validated in an independent set o...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL570 92 Samples
FTP download: GEO (CEL, CHP) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE31nnn/GSE31189/
Series		Accession: GSE31189	ID: 200031189

276. Transcriptome of normal, paracancerouse and cancerous bladder tissues based on RNA-Seq method
(Submitter supplied) In order to support our research of bladder cancer in human genome, we conducted massively parallel pyrosequencing of mRNAs (RNA-Seq) using normal, paracancerouse and cancerous human bladder tissues. We obtained a total of 30.0 m...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL10999 3 Samples
FTP download: GEO (DIFF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE35nnn/GSE35178/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA150663
Series		Accession: GSE35178	ID: 200035178

277. Gene expression analysis in bladder cancer cells lines
(Submitter supplied) We have previously characterized two groups of bladder cancer cell lines based on their dependence on Hedgehog signaling for survival. Here, we examined the global gene expression in these cells. By comparing the gene expression ...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL10558 12 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE28nnn/GSE28255/
Series		Accession: GSE28255	ID: 200028255

278. Gene expression profiling of 19 bladder cancers from the University of Virginia
(Submitter supplied) Given the heterogeneity of disease evident from study of the presentation, histomorphology, disease course, and molecular lesions of bladder cancer, a cohort of 8 non-muscle invasive and 11 muscle invasive bladder cancers were pr...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL96 19 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE37nnn/GSE37317/
Series		Accession: GSE37317	ID: 200037317

279. Gene expression signatures in a human bladder cancer cell line SW780 transfected with miR-137 precursor molecule
(Submitter supplied) To clarify the effect of miRNAs, we carried out a gene expression microarray analysis of SW780 cells transfected with a miR-137 precursor or a negative control.  We found that 1,326 probe sets (1,016 unique genes) were downregula...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL13607 2 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE41nnn/GSE41760/
Series		Accession: GSE41760	ID: 200041760

280. Identification of target genes of cancer-related microRNAs in human cancer
(Submitter supplied) To identify target genes of cancer-related microRNAs in human cancer, several cell lines (bladder cancer, prostate cancer, renal cell carcinoma, esophageal squamous cell carcinoma, and head and neck squamous cell carcinoma) were ...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platforms: GPL10332 GPL13607 35 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE37nnn/GSE37119/
Series		Accession: GSE37119	ID: 200037119

281. FGFR3-shRNA induced transcriptional changes in RT112 bladder cancer cells
(Submitter supplied) Aberrant activation of FGFR3 via overexpression or mutation is a frequent feature of bladder cancer; however, its molecular and cellular consequences and functional relevance to carcinogenesis are not well understood.  In this st...
Organism:	Homo sapiens
Type:		Expression profiling by array
Dataset: GDS4454 Platform: GPL570 24 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE41nnn/GSE41035/
Series		Accession: GSE41035	ID: 200041035

282. Fibroblast growth factor receptor 3 depletion effect on bladder cancer cell line RT112
Analysis of bladder cancer cell line RT112 subjected to doxycycline-inducible, shRNA knockdown of FGFR3. Knockdown of FGFR3 in RT112 cells significantly attenuates tumor growth in vitro and in vivo. Results provide insight into the molecular mechanis...
Organism:	Homo sapiens
Type:		Expression profiling by array, transformed count, 4 genotype/variation, 2 protocol sets
Platform: GPL570 Series: GSE41035 24 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/datasets/GDS4nnn/GDS4454/
DataSet		Accession: GDS4454	ID: 4454

283. Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells
(Submitter supplied) We assessed Smart-Seq, a new single-cell RNA-Seq library preparation method, on a variety of mouse and human RNA samples or cells.
Organism:	Mus musculus; Homo sapiens
Type:		Expression profiling by high throughput sequencing
4 related Platforms 121 Samples
FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE38nnn/GSE38495/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA170814
Series		Accession: GSE38495	ID: 200038495

284. Expression data from bladder tumors and adjacent normal tissues
(Submitter supplied) miRNAs are involved in cancer development and progression,acting as tumor suppressors or oncogenes. Half of the human miRNAs are located in cancer-associated genomic regions and can function as tumor suppressor genes or oncogenes...
Organism:	synthetic construct; Homo sapiens
Type:		Non-coding RNA profiling by array
Platform: GPL8786 20 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE39nnn/GSE39093/
Series		Accession: GSE39093	ID: 200039093

285. Stability of miRNA in FFPE tumour samples exhibiting degraded mRNA [Bladder samples]
(Submitter supplied) Background: As degradation of formalin-fixed paraffin-embedded (FFPE) samples limits ability to expression profile, we explored factors predicting success for FFPE profiling and investigated an approach overcoming this limitation...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL5188 141 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE39nnn/GSE39016/
Series		Accession: GSE39016	ID: 200039016

286. Integrated genomic and gene expression profiling identifies two major gene/genomic circuits operating in urothelial carcinoma
(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:	Homo sapiens
Type:		Expression profiling by array; Genome variation profiling by genome tiling array
Platforms: GPL6947 GPL4723 277 Samples

data/bladder_cancer_GEO.txt  view on Meta::CPAN

FTP download: GEO (GPR) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE6nnn/GSE6936/
Series		Accession: GSE6936	ID: 200006936

328. Prediction of response and survival following chemotherapy in patients with advanced bladder cancer
(Submitter supplied) BACKGROUND Cisplatin-containing chemotherapy is the standard of care for patients with locally advanced and metastatic transitional cell carcinoma of the urothelium.  The response rate is around 50% and tumor derived molecular pr...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL96 30 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE5nnn/GSE5287/
Series		Accession: GSE5287	ID: 200005287

329. Analysis of clinical bladder cancer classification according to microarray expression profiles
(Submitter supplied) Using Affymetrix microarray technology we analyzed the gene expression profiles of the most important pathological categories of bladder cancer in order to detect potential marker genes. Applying an unsupervised cluster algorithm...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL570 12 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE7nnn/GSE7476/
Series		Accession: GSE7476	ID: 200007476

330. Gene expression signatures predict outcome in non-muscle invasive bladder carcinoma - a multi-center validation study
(Submitter supplied) Background Clinically useful molecular markers predicting the clinical course of patients diagnosed with non-muscle invasive bladder cancer are needed to improve treatment outcome. Methods We used custom designed oligonucleotide ...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL4060 808 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE5nnn/GSE5479/
Series		Accession: GSE5479	ID: 200005479

331. Molecular Features of Hormone-Refractory Prostate Cancer Cells by Genome-wide Gene-expression Profiles
(Submitter supplied) To characterize the molecular features of clinical (Hormone-Refractory Prostate Cancers) HRPCs, we generated the precise gene-expression profiles of 25 clinical HRPCs and 10 hormone-sensitive prostate cancers (HSPCs) by genome-wi...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL4747 35 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE6nnn/GSE6811/
Series		Accession: GSE6811	ID: 200006811

332. Role of E2F3 expression in human bladder and prostate cancer cells
(Submitter supplied) Amplification and overexpression of the E2F3 gene at  6p22 in human bladder cancer is associated with increased  tumour stage, grade and proliferation index, and in  prostate cancer E2F3 overexpression is linked to tumour  aggres...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL3904 3 Samples
FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE6nnn/GSE6131/
Series		Accession: GSE6131	ID: 200006131

333. Amplification and overexpression of E2F3 in human bladder cancer.
(Submitter supplied) We demonstrate that, in human bladder cancer, amplification of the E2F3 gene, located at 6p22, is associated with overexpression of its encoded mRNA transcripts and high levels of expression of E2F3 protein. Immunohistochemical a...
Organism:	Homo sapiens
Type:		Genome variation profiling by array
Platforms: GPL4483 GPL4482 GPL3898 10 Samples
FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE6nnn/GSE6123/
Series		Accession: GSE6123	ID: 200006123

334. Classification of carcinoma in situ lesions in human bladder cancer
(Submitter supplied) The presence of carcinoma in situ (CIS) lesions in the urinary bladder is associated with a high risk of disease progression to a muscle invasive stage. In this study, we used microarray expression profiling to examine the gene e...
Organism:	Homo sapiens
Type:		Expression profiling by array
Dataset: GDS1479 Platform: GPL96 60 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE3nnn/GSE3167/
Series		Accession: GSE3167	ID: 200003167

335. Carcinoma in situ lesions of the urinary bladder
Analysis of bladder biopsies of superficial transitional cell carcinomas with or without surrounding carcinoma in situ (CIS) lesions and muscle invasive carcinomas (mTCC). CIS is a common mTCC precursor. Results provide insight into which tumors in e...
Organism:	Homo sapiens
Type:		Expression profiling by array, count, 6 specimen sets
Platform: GPL96 Series: GSE3167 60 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/datasets/GDS1nnn/GDS1479/
DataSet		Accession: GDS1479	ID: 1479

336. Partially degraded RNA from bladder washing is a suitable sample for studying gene expression profiles of bladder cancer
(Submitter supplied) The aims of this study were to determine the impact of different levels of RNA degradation as well as to ascertain if the gene expression profiles obtained from bladder washing correlates to that obtained from the related bladder...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL2767 16 Samples
FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE3nnn/GSE3192/
Series		Accession: GSE3192	ID: 200003192

337. Bladder cancer cells
(Submitter supplied) Examination of gene expression in several bladder cancer cell lines grown on either plastic, SIS (small intestine submucosa) gel or matrigel. A data table of normalized values is appended below.  Data were normalized as described...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL131 36 Samples
FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSEnnn/GSE796/
Series		Accession: GSE796	ID: 200000796

338. Bladder tumour stage classification
(Submitter supplied) Bladder tumours used to construct a tumour stage classifier Keywords = bladder cancer, disease stages, classification Keywords: other
Organism:	Homo sapiens
Type:		Expression profiling by array
Dataset: GDS183 Platform: GPL80 40 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSEnnn/GSE89/
Series		Accession: GSE89	ID: 200000089

339. Bladder tumour recurrence prediction
(Submitter supplied) Expression profiling of superficial bladder tumours to delineate the expression pattern differences between non-recurring and recurring tumours. Keywords = bladder cancer, superficial, recurrence, prediction Keywords: other
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL80 31 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSEnnn/GSE88/
Series		Accession: GSE88	ID: 200000088

340. Bladder tumor stage classification
Identification of clinically relevant subclasses of bladder carcinoma. Three major stages identified, Ta, T1 and T2-4. Ta tumors further classified into subgroups. A 32-gene molecular classifier was built.      
Organism:	Homo sapiens
Type:		Expression profiling by array, count, 3 disease state, 4 tissue sets
Platform: GPL80 Series: GSE89 40 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/datasets/GDSnnn/GDS183/
DataSet		Accession: GDS183	ID: 183

341. [Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array
(Submitter supplied) Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html  June 03, 2009: annotation table updated with netaffx build 28 June 07, 20...
Organism:	Mus musculus
601 DataSets 4393 Series 40 Related Platforms 57112 Samples
FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/platforms/GPL1nnn/GPL1261/
Platform	Accession: GPL1261	ID: 100001261

342. [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array
(Submitter supplied) Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html  June 03, 2009: annotation table updated with netaffx build 28 June 06, 20...
Organism:	Homo sapiens
602 DataSets 5421 Series 61 Related Platforms 161817 Samples
FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/platforms/GPLnnn/GPL570/
Platform	Accession: GPL570	ID: 100000570