App-GeoCancerPrognosticDatasetsRetriever

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data/bladder_cancer_GEO.txt  view on Meta::CPAN

22. Next-generation RNA sequencing of murine bladder cancer cells isolated from P53/PTEN KO tumors at different stages of the disease.
(Submitter supplied) Cancer cells from P53/PTEN KO bladder tumors collected at 5, 9, and 13 weeks after adenoviral vector injection.
Organism:	Mus musculus
Type:		Expression profiling by high throughput sequencing
Platform: GPL17021 9 Samples
FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE138nnn/GSE138327/
Series		Accession: GSE138327	ID: 200138327

23. In vivo transcriptome profiling of control and GANAB-KD UMUC3 bladder carcinoma cells [bulk]
(Submitter supplied) Carcinoma cells achieve malignant progression and therapy resistance through de-differentiation. While differentiation therapy has proven to be highly efficient in acute promyelocytic leukemia, this therapeutic strategy has not b...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL24676 6 Samples
FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE164nnn/GSE164042/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA688702
Series		Accession: GSE164042	ID: 200164042

24. In vivo transcriptome profiling of control and GANAB-KD UMUC3 bladder carcinoma cells [scRNA-Seq]
(Submitter supplied) Carcinoma cells achieve malignant progression and therapy resistance through de-differentiation. While differentiation therapy has proven to be highly efficient in acute promyelocytic leukemia, this therapeutic strategy has not b...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL24676 2 Samples
FTP download: GEO (MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE164nnn/GSE164041/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA688700
Series		Accession: GSE164041	ID: 200164041

25. FOXA1 suppresses cancer immunity independent of DNA binding
(Submitter supplied) Exclusion of lymphocytes from tumors is a major barrier for effective immuno- and chemo-therapy of cancer. We found that FOXA1 overexpression inversely correlates with expression of antigen processing and presentation and interfe...
Organism:	Homo sapiens
Type:		Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing
Platform: GPL20301 51 Samples
FTP download: GEO (BW, XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE142nnn/GSE142221/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA596242
Series		Accession: GSE142221	ID: 200142221

26. Gene expression data from UMUC-14 following FGFR3 knock-down using FGFR3 siRNAs
(Submitter supplied) To better understand the molecular mechanisms underlying altered-FGFR3 oncogenic activity in bladder carcinomas, we made use of  UMUC-14 cell lines, which endogenously expressed a mutated activated form of FGFR3 (FGFR3-S249C), th...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL22321 6 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE125nnn/GSE125547/
Series		Accession: GSE125547	ID: 200125547

27. Transcriptome Analysis of Bladder Cancer Cell Persistently Infected by Newcastle disease virus (NDV)
(Submitter supplied) This project seeks to determine if there is a difference in expression between  bladder cancer cells vs NDV-resistant bladder cancer cells.This result provides insight of the orchestrated transcriptomic changes that occur in the ...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL10904 6 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE163nnn/GSE163881/
Series		Accession: GSE163881	ID: 200163881

28. Super-enhancer LncRNA expression profile in human bladder cancer cell line and human urothelial immortalized cell line
(Submitter supplied) To further explore the differential expression profile of super-enhancer long noncoding RNA (LncRNA) in human bladder cancer, we have employed super-enhancer lncRNA microarray expression profiling as a discovery platform to ident...
Organism:	Homo sapiens
Type:		Expression profiling by array; Non-coding RNA profiling by array
Platform: GPL24592 2 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE159nnn/GSE159682/
Series		Accession: GSE159682	ID: 200159682

29. RBMX suppresses tumorigenicity and progression of bladder cancer via interaction with hnRNP A1 protein to regulate PKM alternative splicing
(Submitter supplied) Bladder cancer (BCa) is one of the most common malignant tumors of urinary system and has high incidence rate and mortality but there is a lack of effective treatment. Therefore, an in-depth study of the molecular mechanisms invo...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL24676 6 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE150nnn/GSE150548/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA632747
Series		Accession: GSE150548	ID: 200150548

30. Next Generation Sequencing  Quantitative Analysis of altered expression of genes in lncRNA ELNAT1 knockdown bladder cancer cells
(Submitter supplied) Bladder cancer (BCa) is one of the most common genitourinary malignancies worldwide, with a high recurrence and mortality rate. Previous study revealed that EV-packaged ELNAT1 played an important role in the occurrence and develo...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL16791 6 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156461/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA658030
Series		Accession: GSE156461	ID: 200156461

31. Microarray profiling analysis of circular RNAs expression in bladder cancer
(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:	Homo sapiens
Type:		Non-coding RNA profiling by array
Platforms: GPL27765 GPL27766 12 Samples
FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE140nnn/GSE140587/
Series		Accession: GSE140587	ID: 200140587

32. Microarray profiling analysis of circular RNAs expression in bladder cancer [lncRNA profiling]
(Submitter supplied) Background: Growing evidence has shown the association of long noncoding RNA/microRNA/mRNA is implicated in tumor initiation, development, and progression. Long noncoding RNA (lncRNA) HAND2-AS1 exhibits anti-cancer effects in div...
Organism:	Homo sapiens
Type:		Non-coding RNA profiling by array
Platform: GPL27766 6 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE140nnn/GSE140585/
Series		Accession: GSE140585	ID: 200140585

33. Microarray profiling analysis of circular RNAs expression in bladder cancer [miRNA profiling]
(Submitter supplied) Background: Growing evidence has shown the association of long noncoding RNA/microRNA/mRNA is implicated in tumor initiation, development, and progression. Long noncoding RNA (lncRNA) HAND2-AS1 exhibits anti-cancer effects in div...
Organism:	Homo sapiens
Type:		Non-coding RNA profiling by array
Platform: GPL27765 6 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE140nnn/GSE140584/
Series		Accession: GSE140584	ID: 200140584

34. Evaluation of mRNA expression changes upon TRAF4 mis-expression in HT1376 and T24 bladder cancer cell lines
(Submitter supplied) TRAF4 is highly expressed in the epithelial bladder cancer cell line, HT1376 and poorly expressed in the mesenchymal cell line, T24. We evaluated the genetic changes in HT1376 upon TRAF4 knockdown using two independent shRNAs tar...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL23227 20 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE161nnn/GSE161509/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA678557
Series		Accession: GSE161509	ID: 200161509

35. exosomal ELNAT1 promotes lymphatic metastasis of bladder cancer
(Submitter supplied) The crosstalk between tumor cells and LECs triggers the LN metastasis in bladder cancer (BCa), but the underlying mechanisms are not completely understood. Previously, we identified that BCa-secreted extracellular vesicles (EVs)-...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing
Platform: GPL16791 10 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156308/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA657414
Series		Accession: GSE156308	ID: 200156308

36. RNA-Seq of circCDYL knockdown (KD) samples in HepG2, J82, and UMUC3 cells and of GRWD1, IGF2BP1, and IGF2BP2 knockdown (KD) samples in J82 and UMUC3 cells
(Submitter supplied) We profile gene expression upon circCDYL KD in HepG2 cells and in two bladder cancer cell lines J82 and UMUC3 as well as upon knockdown of the RNA binding proteins (RBP) GRWD1, IGF2BP1, and IGF2BP2 in J82 and UMUC3

data/bladder_cancer_GEO.txt  view on Meta::CPAN

(Submitter supplied) One of the major challenges for chemotherapy is appearance of resistance to compounds. Despite several singling pathways have been implicated in development of Adriamycin (ADM) resistance, mechanisms involved in ADM-resistant ost...
Organism:	Homo sapiens
Type:		Expression profiling by RT-PCR
Platform: GPL27925 6 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE142nnn/GSE142230/
Series		Accession: GSE142230	ID: 200142230

62. Circular RNA circRIMS1 acts as a sponge of miR-433-3p to promote bladder cancer progression by regulating CCAR1 expression
(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing; Other
Platform: GPL20795 9 Samples
FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE150nnn/GSE150145/
Series		Accession: GSE150145	ID: 200150145

63. Circular RNA circRIMS1 acts as a sponge of miR-433-3p to promote bladder cancer progression by regulating CCAR1 expression (mRNA)
(Submitter supplied) Background: Circular RNAs (circRNAs), a subclass of noncoding RNAs, have been reported to be involved in the progression of various diseases. However, the exact role of circRIMS1, also termed hsa_circ_0132246, in human bladder ca...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing; Other
Platform: GPL20795 6 Samples
FTP download: GEO (XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE150nnn/GSE150143/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA631256
Series		Accession: GSE150143	ID: 200150143

64. Circular RNA circRIMS1 acts as a sponge of miR-433-3p to promote bladder cancer progression by regulating CCAR1 expression (circRNA)
(Submitter supplied) Background: Circular RNAs (circRNAs), a subclass of noncoding RNAs, have been reported to be involved in the progression of various diseases. However, the exact role of circRIMS1, also termed hsa_circ_0132246, in human bladder ca...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing; Other
Platform: GPL20795 3 Samples
FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE150nnn/GSE150142/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA631252
Series		Accession: GSE150142	ID: 200150142

65. Identification of Scrt1, a new transcriptional regulator of   beta-cell maturation using chromatin accessibility variations
(Submitter supplied) Pancreatic beta-cells are highly specialized cells that produce and release insulin in response to nutrients, hormones and neurotransmitters. Glucose-induced insulin secretion, a unique feature of fully differentiated beta-cells,...
Organism:	Rattus norvegicus
Type:		Expression profiling by high throughput sequencing
Platform: GPL22396 10 Samples
FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE130nnn/GSE130651/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA540879
Series		Accession: GSE130651	ID: 200130651

66. Kinome expression profiling of muscle invasive bladder cancer (MIBC) patients
(Submitter supplied) Muscle invasive bladder cancer (MIBC) is one of the aggressive cancer with limited treatment options. Targeted gene expression profiling in normal and tumor samples from MIBC patients could aid in identification of potential ther...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL26612 48 Samples
FTP download: GEO (RCC) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE130nnn/GSE130598/
Series		Accession: GSE130598	ID: 200130598

67. Genome-wide transcriptome analysis of PAK4 inhibition/knockdown in human bladder cancer cell line VMCUB1
(Submitter supplied) Using multi-omic analyses, we identified PAK4 (P21 (RAC1) Activated Kinase 4) amplification and overexpression of Kinase PAK4 in a subset of bladder cancers. We confirmed the role of PAK4 in bladder cancer cell proliferation and ...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL16791 4 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE130nnn/GSE130455/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA540285
Series		Accession: GSE130455	ID: 200130455

68. Expression data from mice bladder with MB49-induced cancer treated with alpha1-oleate.
(Submitter supplied) Potent chemotherapeutic agents are required to counteract the aggressive behavior of cancer cells and patients often experience severe side effects, due to tissue toxicity. This study addresses if a better balance between efficac...
Organism:	Mus musculus
Type:		Expression profiling by array
Platform: GPL11180 9 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE148nnn/GSE148308/
Series		Accession: GSE148308	ID: 200148308

69. Next Generation Sequencing Facilitates Quantitative Analysis of bladder cancer cells (T24) with constitutively active RhoC mutant (Q63E) overexpression and vector control (VEC) Transcriptomes
(Submitter supplied) Purpose: Next-generation sequencing (NGS) has revolutionized systems-based analysis of cellular pathways. The goals of this study are to compare NGS-derived constitutively active RhoC mutant (Q63E) overexpressed bladder cancer ce...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL20795 6 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE129nnn/GSE129295/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA530762
Series		Accession: GSE129295	ID: 200129295

70. Elucidating the role of glycogen debranching enzyme AGL in bladder carcinogenesis by generation and characterization of knockout mice
(Submitter supplied) Amylo-alpha-1-6-glucosidase-4-alpha-glucanotransferase (AGL) is an enzyme primarily responsible for glycogen debranching. Inactivating germline mutations lead to glycogen storage disease III (GSDIII). AGL was found to be a tumor ...
Organism:	Mus musculus
Type:		Expression profiling by high throughput sequencing
Platform: GPL21103 8 Samples
FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE113nnn/GSE113158/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA450320
Series		Accession: GSE113158	ID: 200113158

71. Genomic Landscape of Young-Onset Bladder Cancer and Its Prognostic Implication on Adult Bladder Cancer
(Submitter supplied) Bladder cancer is common in elderly men, and it is a highly mutated tumor with frequent TP53 and FGFR3 mutation. Young-onset bladder cancer (YBC) is extremely rare; therefore, its genomic characteristics are unknown and appropria...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL16791 11 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE133nnn/GSE133192/
Series		Accession: GSE133192	ID: 200133192

72. RNA sequencing of chemotherapy-resistant muscle-invasive urothelial bladder cancer
(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:	Homo sapiens; Mus musculus
Type:		Expression profiling by high throughput sequencing
Platforms: GPL27467 GPL28146 6 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE145nnn/GSE145140/
Series		Accession: GSE145140	ID: 200145140

73. Whole transcriptome sequencing of chemotherapy-resistant muscle-invasive urothelial bladder cancer
(Submitter supplied) To identify the therapeutic targets in a treatment-refractroy cancer patient, we performed single-cell RNA sequencing for 3,115 cells from primary bladder cancer (BC159-T#3) and patient-derived xenografts (BC159-T#3-PDX-vehicle a...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL27467 3 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE145nnn/GSE145139/
Series		Accession: GSE145139	ID: 200145139

74. Single-cell RNA sequencing of chemotherapy-resistant muscle-invasive urothelial bladder cancer
(Submitter supplied) To identify the therapeutic targets in a treatment-refractory cancer patient, we performed single-cell RNA sequencing for 3,115 cells from primary bladder cancer (BC159-T#3) and patient-derived xenografts (BC159-T#3-PDX-vehicle a...
Organism:	Mus musculus; Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platforms: GPL28146 GPL27467 3 Samples
FTP download: GEO (TXT, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE145nnn/GSE145137/
Series		Accession: GSE145137	ID: 200145137

75. NONO-mediated alternative splicing of SETMAR inhibits lymphatic metastasis in bladder cancer
(Submitter supplied) To explore the molecular mechanism underlying NONO-mediated lymphatic metastasis inhibition in bladder cancer, a genome-wide RNA-sequencing was conducted to compare gene expression profiles of UM-UC-3 cells with NONO knockdown an...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL24676 3 Samples
FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE147nnn/GSE147323/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA613734
Series		Accession: GSE147323	ID: 200147323

76. Multi Lineage Heterogeneity and Plasticity in Urothelial Carcinoma of the Bladder
(Submitter supplied) Single cell transcriptome analyses of mouse and human model systems of bladder cancer
Organism:	Homo sapiens; Mus musculus
Type:		Expression profiling by high throughput sequencing
Platforms: GPL19057 GPL18573 8 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE146nnn/GSE146137/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA609439
Series		Accession: GSE146137	ID: 200146137

77. Analysis of gene expression change between ectopic expression SOX2 in T24 bladder cancer cells.
(Submitter supplied) We collected total RNA from both T24-Ctrl and T24-SOX2 and examined mRNA expression profile, comprehensively.

data/bladder_cancer_GEO.txt  view on Meta::CPAN

SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA531378
Series		Accession: GSE129441	ID: 200129441

111. Molecular characterizaion of neuroendocrine-like bladder cancer
(Submitter supplied) Neuroendocrine bladder cancer is an aggressive variant of bladder cancer with significant metastatic potential and high risk of mortality. Diagnosis of these tumors is currently dependent on morphological criteria and staining fo...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL22995 256 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE128nnn/GSE128702/
Series		Accession: GSE128702	ID: 200128702

112. Impact of Immune and Stromal Infiltration on Outcomes Following Bladder-Sparing Trimodality Therapy for Muscle-Invasive Bladder Cancer
(Submitter supplied) Background: Bladder-sparing trimodality therapy (TMT) is an alternative to radical cystectomy (RC) for muscle-invasive bladder cancer (MIBC), and biomarkers to inform therapy selection are needed. Objective: To evaluate immune an...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL22995 136 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE128nnn/GSE128701/
Series		Accession: GSE128701	ID: 200128701

113. Dysregulation of EMT Drives the Progression to Clinically Aggressive Sarcomatoid Bladder Cancer [RT-PCR]
(Submitter supplied) The progression of conventional urothelial carcinoma (UC) of the bladder to a tumor with a mesenchymal phenotype, referred to as sarcomatoid carcinoma (SARC), is signified by a high propensity for regional and distant metastasis ...
Organism:	Homo sapiens
Type:		Expression profiling by RT-PCR
Platform: GPL17214 132 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE128nnn/GSE128277/
Series		Accession: GSE128277	ID: 200128277

114. Identification of potential biomarkers of response and resistance to programmed cell death-1 blockade in patients with advanced urothelial tumors
(Submitter supplied) We have performed an analysis of a small series of UC patients in order to analyze their characteristics and patterns of response and resistance to inmunotherapy
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL17586 11 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE111nnn/GSE111636/
Series		Accession: GSE111636	ID: 200111636

115. Large-scale and high-confidence serum circulating miRNA biomarker discovery in prostate cancer
(Submitter supplied) A serum miRNA combination could be a powerful classifier for the detEsophageal Cancertion of patients with prostate cancer.
Organism:	Homo sapiens
Type:		Non-coding RNA profiling by array
Platform: GPL21263 1591 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE112nnn/GSE112264/
Series		Accession: GSE112264	ID: 200112264

116. Gene expression data from MGH-U3, RT112 and UM-UC-5 following TYRO3 knock-down
(Submitter supplied) To better understand the molecular mechanisms underlying TYRO3 oncogenic activity in bladder carcinomas, we made use of  MGH-U3, RT112 and UM-UC-5 cell lines, which were derived from a human bladder tumor and endogenously express...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL22945 18 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE100nnn/GSE100025/
Series		Accession: GSE100025	ID: 200100025

117. Genomic Whole-Organ Map of Mucosal Field Effects Initiating Human Bladder Carcinogenesis
(Submitter supplied) We have developed a whole organ mapping approach which combines microscopic assessment of the entire mucosal membrane of the organ affected by cancer with comprehensive genomic profiling.  It was used to study the chronology of t...
Organism:	Homo sapiens
Type:		SNP genotyping by SNP array; Genome variation profiling by SNP array; Methylation profiling by high throughput sequencing
Platforms: GPL26040 GPL9886 61 Samples
FTP download: GEO (IDAT, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE125nnn/GSE125286/
Series		Accession: GSE125286	ID: 200125286

118. Inhibition of a G9a/DNMT network triggers an immune-mediated bladder cancer regression treated with CM272 (IC50)
(Submitter supplied) Based on the identification of G9a as a potential target in BC, we decided to test the effect of a recently described dual inhibitor against G9a/DNMTs, CM-272, in several BC cell lines
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL17586 12 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE115nnn/GSE115544/
Series		Accession: GSE115544	ID: 200115544

119. Inhibition of a G9a/DNMT network triggers an immune-mediated bladder cancer regression
(Submitter supplied) Using a novel immunocompetent quadruple (PtenF/F; Trp53F/F; Rb1F/F;Rbl1-/-) knockout transgenic mouse model of highly aggressive metastatic muscle-invasive BC, we demonstrate that treatment with CM272 and CDDP results in a signif...
Organism:	Mus musculus
Type:		Expression profiling by array
Platform: GPL20258 20 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE115nnn/GSE115485/
Series		Accession: GSE115485	ID: 200115485

120. Application of a NanoString Technology-based TP53 Functional Assay for Prediction of Chemotherapy Response of Muscle-invasive Bladder Cancer
(Submitter supplied) Platinum-based treatment (e.g., cisplatin, carboplatin) is generally the first-line chemotherapy for muscle-invasive bladder cancer (MIBC) and mediates regression in approximately 50% of the patients. The goal of this study was t...
Organism:	Homo sapiens
Type:		Other
Platform: GPL21779 48 Samples
FTP download: GEO (RCC) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE80nnn/GSE80711/
Series		Accession: GSE80711	ID: 200080711

121. Expression data from T24 cells after TRIP13 knockdown
(Submitter supplied) TRIP13 is a crucial regulator of double-stranded break repair and spindle apparatus checkpoint and its abnormal expression has been found in several human cancers, whereas the role of TRIP13 in the malignant development of urothe...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL15207 6 Samples
FTP download: GEO (CEL, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE109nnn/GSE109029/
Series		Accession: GSE109029	ID: 200109029

122. Divergent biological response to neoadjuvant chemotherapy in muscle-invasive bladder cancer
(Submitter supplied) Despite cisplatin-based neoadjuvant chemotherapy (NAC) 60% of patients with muscle-invasive bladder cancer still have residual invasive disease at radical cystectomy (RC). The NAC-induced biological alterations in these cisplatin...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL22995 133 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE124nnn/GSE124305/
Series		Accession: GSE124305	ID: 200124305

123. Molecular subtype classification of urothelial carcinoma in Lynch syndrome
(Submitter supplied) We aimed to provide a molecular description of Lynch syndrome-associated urothelial cancer in relation to molecular subtypes of sporadic bladder cancer. Whole genome mRNA expression profiles of 41 tumors and immunohistochemical s...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL6244 41 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE104nnn/GSE104922/
Series		Accession: GSE104922	ID: 200104922

124. UBC9 knockdown  in bladder cancer T24 cell lines
(Submitter supplied) UBC9 is the sole conjugating enzyme E2 in the sumoylation and plays a pivotal role in maintaining homeostasis and restraining stress reaction. Targeting UBC9 is emerging as a novel strategy for cancer therapy. However, the role o...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL20795 6 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE117nnn/GSE117143/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA481271
Series		Accession: GSE117143	ID: 200117143

125. Differentially expressed genes after miRNA or siRNA transfection in human cancer cell lines (T24, BOY, A549 and SK-MES)
(Submitter supplied) To identify differentially expressed genes by anti cancer treatments (microRNAs or siRNAs) in human cancer, several cell lines (pancreatic cancer, esophageal cancer and lung squamous cell carcinoma) were subjected to Agilent whol...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL20844 8 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE123nnn/GSE123318/
Series		Accession: GSE123318	ID: 200123318

126. Comparison of gene expression profiling of human non-muscle invasive bladder cancer and  muscle invasive bladder cancer
(Submitter supplied) The biological behaviors, clinical treatment, prognosis of nonmuscle-invasive bladder cancers (NMIBCs) and muscle-invasive bladder cancers (MIBCs) are distinct. Therefore, we performed high-through microarray screening of mRNA ex...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL6480 30 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE77nnn/GSE77952/
Series		Accession: GSE77952	ID: 200077952

127. Genome-wide expression profiling in bladder cancer cells
(Submitter supplied) Differential gene expression profiling in PPP2R2A depleted RT-112 cells was performed using Human Genome U133 Plus 2.0 Array
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL570 6 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE97nnn/GSE97943/
Series		Accession: GSE97943	ID: 200097943

128. ETV5 silencing in bladder cancer cell line 97-7
(Submitter supplied) We hypothesized that ETV5 may be a mediator of the oncogenic effects of mutant FGFR3 in bladder cancer cells ETV5 was silenced by shRNA in the bladder cancer cell line 97-7 to investigate effect on phenotype. To identify downstre...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL570 12 Samples

data/bladder_cancer_GEO.txt  view on Meta::CPAN

Series		Accession: GSE122306	ID: 200122306

129. Circulating miRNA panels for specific and early detection in bladder cancer
(Submitter supplied) A serum miRNA combination could be a powerful classifier for the detection of patients with bladder cancer.
Organism:	Homo sapiens
Type:		Non-coding RNA profiling by array
Platform: GPL21263 972 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE113nnn/GSE113486/
Series		Accession: GSE113486	ID: 200113486

130. LncRNA and mRNA expression patterns in bladder cancer patients with lymph nodes metastasis.
(Submitter supplied) Bladder cancer (BCa) is one of the most common cancers in urinary system worldwide.  And lymphatic metastasis is one of the most common route and its status associates with prognosis for BCa patients. However, the precise molecul...
Organism:	Homo sapiens
Type:		Expression profiling by array; Non-coding RNA profiling by array
Platform: GPL21827 6 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE121nnn/GSE121738/
Series		Accession: GSE121738	ID: 200121738

131. Cdk4-inhibitor induces tumor regression of Bladder cancer in vivo
(Submitter supplied) Cdk4/6 inhibitors have shown to increase overall survival in hormone-positive breast tumors, but whether other solid tumors could respond to these inhibitors has not yet defined. Here we show that Palbociclib (a Cdk4/6 specific i...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL17586 18 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE105nnn/GSE105402/
Series		Accession: GSE105402	ID: 200105402

132. Cdk4-inhibitor induces tumor regression of Bladder cancer in vivo using a metastatic mouse model
(Submitter supplied) Cdk4/6 inhibitors have shown to increase overall survival in hormone-positive breast tumors, but whether other solid tumors could respond to these inhibitors has not yet defined. Here we show that Palbociclib (a Cdk4/6 specific i...
Organism:	Mus musculus
Type:		Expression profiling by array
Platform: GPL20258 20 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE100nnn/GSE100716/
Series		Accession: GSE100716	ID: 200100716

133. Comprehensive molecular classification of bladder cancer reveals distinct prognostic subgroups with different sensitivities to immunotherapy
(Submitter supplied) Previous studies successfully revealed molecular characteristics of bladder cancers, dealing with non-muscle invasive bladder cancer and muscle invasive bladder cancer, separately. At the molecular level, however, there is a grea...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL10558 145 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE120nnn/GSE120736/
Series		Accession: GSE120736	ID: 200120736

134. genome-wide mapping of FoxA target sites in human bladder cancer cells (RT4)
(Submitter supplied) In order to identify direct target genes of FoxA1 in RT4 cells, we carried out genome-wide mapping of FoxA1.
Organism:	Homo sapiens
Type:		Genome binding/occupancy profiling by high throughput sequencing
Platform: GPL16791 4 Samples
FTP download: GEO (BED, TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE86nnn/GSE86918/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA342995
Series		Accession: GSE86918	ID: 200086918

135. Discordant molecular subtype classification of muscle-invasive bladder cancer and matched lymph-node metastases occurs preferentially in the Basal/Squamous-like subtype.
(Submitter supplied) By combining molecular pathology, mRNA profiling, and exome-sequencing we describe muscle-invasive bladder tumors and matched lymph-node metastases.
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL6244 28 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE101nnn/GSE101723/
Series		Accession: GSE101723	ID: 200101723

136. Expression data for T24 bladder cancer cell line - scrambled, SOX4-KD and SOX4 overexpression
(Submitter supplied) We knocked down SOX4 in T24 cell and created 3 cell lines: T24-scrambled, T24-SOX4-knockdown and T24-SOX4-rescue and compared gene expression changes SOX4 is a developmental transcription factor that is overexpressed in as many a...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL23126 10 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE118nnn/GSE118572/
Series		Accession: GSE118572	ID: 200118572

137. Naturally-occurring canine invasive urothelial carcinoma harbors luminal and basal transcriptional subtypes found in human muscle invasive bladder cancer 
(Submitter supplied) RNA-seq was used to identify basal and luminal subtypes in canine bladder cancer. In addition to larger gene-sets, a smaller panel of genes was developed to stratify canine samples into either basal or luminal subtype prospective...
Organism:	Canis lupus familiaris
Type:		Expression profiling by high throughput sequencing
Platform: GPL24229 33 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE110nnn/GSE110661/
Series		Accession: GSE110661	ID: 200110661

138. Differentially expressed genes after miRNA or siRNA transfection in human cancer cell lines III
(Submitter supplied) To identify differentially expressed genes by anti cancer treatments (microRNAs or siRNAs) in human cancer, several cell lines ( pancreatic cancer, renal cell carcinoma, oral squamous cell carcinoma, prostate cancer and bladder c...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL20844 8 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE115nnn/GSE115801/
Series		Accession: GSE115801	ID: 200115801

139. Differentially expressed genes after miRNA or inhibitor transfection in human cancer cell lines
(Submitter supplied) To identify differentially expressed genes by anti cancer treatments (microRNAs or inhibitor) in human cancer, several cell lines (prostate cancer, bladder cancer and renal cancer) were subjected to Agilent whole genome microarra...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL20844 8 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE115nnn/GSE115800/
Series		Accession: GSE115800	ID: 200115800

140. Next Generation Sequencing  Quantitative Analysis of altered expression of genes in lncRNA LNMAT1 knockdown bladder cancer cells
(Submitter supplied) Bladder cancer is one of the most common genitourinary malignancies worldwide, with approximately 429,800 new cases and 165,100 deaths annually in the world. LNMAT1 is reported to play diverse roles in the development and progres...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL16791 6 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE106nnn/GSE106637/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA417490
Series		Accession: GSE106637	ID: 200106637

141. Long noncoding RNA LNMAT1 promotes lymphatic metastasis in bladder cancer
(Submitter supplied) Long non-coding RNAs (lncRNAs) are a large class of non-protein-coding transcripts that are over 200nt in length. LncRNAs have emerged as key regulator of biological process involved in the development and progression of bladder ...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL16791 20 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE106nnn/GSE106534/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA417154
Series		Accession: GSE106534	ID: 200106534

142. miR-200b is associated with cisplatin sensitivity in bladder cancer cells
(Submitter supplied) We aimed to clarify the role of miR-200b in cisplatin (CDDP) sensitivity in bladder cancer (BCa). CDDP resistant T24 cells (T24RC) were transfected with a miR mimic negative control (NC) or a miR-200b mimic, after which cells wer...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL16699 8 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE103nnn/GSE103250/
Series		Accession: GSE103250	ID: 200103250

143. Expression data from human T24 cells transfected with siNC or siNF90
(Submitter supplied) NF90 is a double-stranded RNA binding protein that takes part in microRNA biogenesis, as a competitor for the association of the microprocessor complex with pri-miRNAs, leading to a decrease in miRNA production. We want to know w...
Organism:	synthetic construct; Homo sapiens
Type:		Non-coding RNA profiling by array
Platform: GPL19117 4 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE82nnn/GSE82024/
Series		Accession: GSE82024	ID: 200082024

144. Trancriptional profiling of rat bladder after daily administration of Pioglitazone and Rosiglitazone in vivo (miRNA)
(Submitter supplied) The purpose of the study was to investigate the nongenotoxic carcinogenic effect of Pioglitazone. Pioglitazone is a PPARgamma agonist and is known to cause bladder tumours in male rats and an increase in the incidence of bladder ...
Organism:	Rattus norvegicus
Type:		Non-coding RNA profiling by array
Platform: GPL14860 119 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE68nnn/GSE68604/
Series		Accession: GSE68604	ID: 200068604

145. Trancriptional profiling of rat bladder after daily administration of Pioglitazone and Rosiglitazone in vivo (mRNA)
(Submitter supplied) The purpose of the study was to investigate the nongenotoxic carcinogenic effect of Pioglitazone. Pioglitazone is a PPARgamma agonist and is known to cause bladder tumours in male rats and an increase in the incidence of bladder ...
Organism:	Rattus norvegicus
Type:		Expression profiling by array
Platform: GPL15084 119 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE68nnn/GSE68592/
Series		Accession: GSE68592	ID: 200068592

146. Cell-free lncRNA expression signatures in urine serve as novel noninvasive biomarkers for diagnosis and recurrence prediction of bladder cancer
(Submitter supplied) To identify lncRNAs dysregulated in BC, we assessed the lncRNA expression profile in pooled urine samples of 10 BC patients and 10 controls by microarray. A total of 3093 lncRNAs determined differential expression (fold change>=2...
Organism:	Homo sapiens
Type:		Expression profiling by array; Non-coding RNA profiling by array
Platform: GPL16956 2 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE106nnn/GSE106074/
Series		Accession: GSE106074	ID: 200106074

147. Characterization and therapeutic targeting of the miR-21/PPP2R2A/ERK molecular circuit in bladder cancer
(Submitter supplied) MicroRNAs play an important role in the pathogenesis of different types of cancer including bladder cancer. MiR-21 has been identified to have an oncogenic function, while its inhibition suppresses tumor growth. Here, we followed...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL6480 28 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE97nnn/GSE97782/
Series		Accession: GSE97782	ID: 200097782

148. Identification of gene expression biomarkers in urine for the non-invasive detection of bladder cancer
(Submitter supplied) Fifty patient urine samples diagnosed as high-grade urothelial carcinoma (HGUC) or benign were evaluated for bladder cancer via urine cytology.  RNA was isolated and analyzed by microarray to identify a panel of biomarkers differ...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL10558 50 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE68nnn/GSE68020/
Series		Accession: GSE68020	ID: 200068020

149. Molecular subtype-specific immunocompetent models of high-grade urothelial carcinoma reveal differential neoantigen expression and response to immunotherapy
(Submitter supplied) We developed a UPPL (Upk3a-CreERT2;p53f/f;Ptenf/f;Rosa26LSL-Luc) mouse model of bladder cancer and compared it with the existing BBN (N-butyl-N-(4-hydroxybutyl)nitrosamine) mouse model of blader cancer. We cultured UPPL and BBN p...
Organism:	Mus musculus
Type:		Expression profiling by high throughput sequencing
Platform: GPL19057 36 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE112nnn/GSE112973/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA449647
Series		Accession: GSE112973	ID: 200112973

150. Tumor evolution and drug response in patient-derived organoid models of bladder cancer
(Submitter supplied) Bladder cancer is the fifth most prevalent cancer in the U.S., yet is understudied and relatively lacking in suitable models. Here we describe a biobank of patient-derived organoid lines that recapitulates the spectrum of human b...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL16791 42 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE103nnn/GSE103990/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA407895
Series		Accession: GSE103990	ID: 200103990

151. FGFR3 knock-down
(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:	Homo sapiens
Type:		Expression profiling by array
Platforms: GPL15236 GPL19109 11 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE84nnn/GSE84733/
Series		Accession: GSE84733	ID: 200084733

152. Gene expression data from RT112 following FGFR3 knock-down using FGFR3 siRNAs
(Submitter supplied) To better understand the molecular mechanisms underlying altered-FGFR3 oncogenic activity in bladder carcinomas, we made use of  RT112 cell lines, which were derived from a human bladder tumor and endogenously expressed the FGFR3...
Organism:	Homo sapiens
Type:		Expression profiling by array

data/bladder_cancer_GEO.txt  view on Meta::CPAN

Series		Accession: GSE97239	ID: 200097239

171. Transcriptomic analysis of an archived bladder cancer cohort
(Submitter supplied) Establishment and application of RNAseq based transcriptome analayis on an archivaed bladder cancer cohort.
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platforms: GPL11154 GPL15520 67 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE59nnn/GSE59483/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA255416
Series		Accession: GSE59483	ID: 200059483

172. miRNA sequencing of MIBC
(Submitter supplied) small RNA sequencing of 62 muscle-invasive bladder cancers
Organism:	Homo sapiens
Type:		Non-coding RNA profiling by high throughput sequencing
Platform: GPL17303 62 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE84nnn/GSE84525/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA329538
Series		Accession: GSE84525	ID: 200084525

173. Impact of molecular subtypes in muscle-invasive bladder cancer on predicting response and survival outcome to neoadjuvant chemotherapy: results from a multi-institutional validation study
(Submitter supplied) Four different molecular classifications of muscle-invasive bladder cancer (MIBC) based on gene expression have been proposed. With the ultimate goal of utilizing these molecular subtypes for personalized treatment, we investigat...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL22995 305 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE87nnn/GSE87304/
Series		Accession: GSE87304	ID: 200087304

174. Molecular classification of bladder cancer: global mRNA classification versus tumor cell phenotype classification.
(Submitter supplied) In this study gene expression profiles for 307 cases of advanced bladder cancers were compared to molecular phenotype at the tumor cell level. TUR-B tissue for RNA extraction was macrodissected from the close vicinity of the tiss...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL6244 307 Samples
FTP download: GEO (CEL, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE83nnn/GSE83586/
Series		Accession: GSE83586	ID: 200083586

175. Gene expression profile changes after ANLN knockdown in J82 cells
(Submitter supplied) To investigate gene expression profile changes after ANLN knockdown, we have employed whole genome microarray expression profiling as a discovery platform to identify genes that altered after ANLN knockdown, so as to explore the ...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL13497 6 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE81nnn/GSE81629/
Series		Accession: GSE81629	ID: 200081629

176. mRNA Expression data from bladder cancer and normal bladder tissue
(Submitter supplied) Bladder cancer (BCa) is one of the most common malignancy of the urinary tract. In order to improve the diagnosis, prevention and treatment of BCa, the details of molecular mechanisms underlying the tumorigenesis and development ...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL17586 6 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE76nnn/GSE76211/
Series		Accession: GSE76211	ID: 200076211

177. Expression profiles of circular RNAs in bladder cancer
(Submitter supplied) To explore circular RNA (circRNA) expression profiling and their biological functions in bladder cancer, we surveyed the circRNA expression signature of 4 pairs of matched bladder cancer and para-cancer tissues from clinical pati...
Organism:	Homo sapiens
Type:		Non-coding RNA profiling by array
Platform: GPL19978 8 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE92nnn/GSE92675/
Series		Accession: GSE92675	ID: 200092675

178. Targeting metastasis stem cells through the fatty acid receptor CD36 (DID+, DID- and CD44DIM).
(Submitter supplied) Metastasis is the leading cause of cancer-related deaths. For most human cancers, the identity of the cells that initiate and promote metastasis is still unknown, hampering our ability to develop therapies to prevent or inhibit t...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL17077 15 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE83nnn/GSE83346/
Series		Accession: GSE83346	ID: 200083346

179. Targeting metastasis stem cells through the fatty acid receptor CD36
(Submitter supplied) Metastasis is the leading cause of cancer-related deaths. For most human cancers, the identity of the cells that initiate and promote metastasis is still unknown, hampering our ability to develop therapies to prevent or inhibit t...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL17077 13 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE83nnn/GSE83276/
Series		Accession: GSE83276	ID: 200083276

180. Targeting metastasis stem cells through the fatty acid receptor CD36 (II)
(Submitter supplied) Metastasis is the leading cause of cancer-related deaths. For most human cancers, the identity of the cells that initiate and promote metastasis is still unknown, hampering our ability to develop therapies to prevent or inhibit t...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL15207 10 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE72nnn/GSE72938/
Series		Accession: GSE72938	ID: 200072938

181. Targeting metastasis stem cells through the fatty acid receptor CD36 (I)
(Submitter supplied) Metastasis is the leading cause of cancer-related deaths. For most human cancers, the identity of the cells that initiate and promote metastasis is still unknown, hampering our ability to develop therapies to prevent or inhibit t...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL16699 15 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE72nnn/GSE72935/
Series		Accession: GSE72935	ID: 200072935

182. Differentially expressed mRNAs in bladder cancer stem cells
(Submitter supplied) Using the highly sensitive lncRNA array (Arraystar human lncRNA microarray), we screened the lncRNAs and mRNA abundant in bladder cancer stem cells sorted from three bladder cancer cell lines, compared to the bladder cancer cells...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL19023 6 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE90nnn/GSE90903/
Series		Accession: GSE90903	ID: 200090903

183. Enzalutamide inhibits proliferation of gemcitabine-resistant bladder cancer cells with increased androgen receptor expression
(Submitter supplied) Advanced bladder cancer is treated mainly with gemcitabine and cisplatin, but most patients eventually become resistance to these chemotherapeutic agents. Androgen receptor (AR) signaling has been implicated in bladder cancer as ...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL17077 6 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE77nnn/GSE77883/
Series		Accession: GSE77883	ID: 200077883

184. Gene expression analysis on arsenic-induced malignant transformation
(Submitter supplied) Arsenic is environmental risk factor and has been linked to urothelial carcinoma incidence.  Arsenic exposure-induced malignant transformed cells was established from normal urothelial cells by chronic arsenic exposure for 10 mon...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL10558 5 Samples
FTP download: GEO (IDAT, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE90nnn/GSE90023/
Series		Accession: GSE90023	ID: 200090023

185. A polymorphic intronic enhancer at 19q12 drives CCNE1 expression in bladder cancer cells
(Submitter supplied) We performed chromatin immunoprecipitation against a marker of active regulatory elements in bladder cancer cell lines to highlight regulatory regions specific to the bladder cancer genome. We then compared our dataset to other p...
Organism:	Homo sapiens
Type:		Genome binding/occupancy profiling by high throughput sequencing
Platform: GPL11154 6 Samples
FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE75nnn/GSE75286/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA303099
Series		Accession: GSE75286	ID: 200075286

186. Context-dependent role of ARF for response to chemotherapy in muscle invasive bladder cancer
(Submitter supplied) Gene expression profiling analysis (RNAseq) of mouse bladder epithelium from wildtype mice (Arf+/+; p53+/+; Pten+/+) or bladder tumors from Arf-wild-type (Arf+/+; p53f/f; Ptenf/f) or Arfnull (Arff/f; p53f/f; Ptenf/f) mice that ha...
Organism:	Mus musculus
Type:		Expression profiling by high throughput sequencing
Platform: GPL13112 24 Samples
FTP download: GEO (TXT, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE89nnn/GSE89823/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA353384
Series		Accession: GSE89823	ID: 200089823

187. Expression profiles of lncRNAs in bladder cancer
(Submitter supplied) To explore non-coding and coding expression profiling and their biological functions in bladder cancer, we surveyed the lncRNA and mRNA expression signature of bladder cancer and para-cancer tissues using microarray for four pati...
Organism:	Homo sapiens
Type:		Expression profiling by array; Non-coding RNA profiling by array
Platform: GPL16956 8 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE89nnn/GSE89006/
Series		Accession: GSE89006	ID: 200089006

188. Gene expression profile of micropapillary bladder cancer
(Submitter supplied) Analyses of mRNA gene expression profiling performed on 43 micropapillary bladder samples and 89 conventional urothelial carcinoma samples. Micropaillary tumors showed downregulation of miR-296 and activation of chromatin-remodel...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL14951 132 Samples
FTP download: GEO (IDAT, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE86nnn/GSE86411/
Series		Accession: GSE86411	ID: 200086411

189. Gene expression profile for SMYD3 knockdown in esophageal squamous carcinoma cell
(Submitter supplied) SET (Su) and MYND (myeloid-Nervy-DEAF-1) domain-containing protein (SMYD) is a methyltransferase family, including five members of which SMYD1, SMYD2, SMYD3 and SMYD4, has been found to play critical roles in human carcinogenesis...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL15207 2 Samples
FTP download: GEO (CEL, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE85nnn/GSE85419/
Series		Accession: GSE85419	ID: 200085419

190. Biased Expression of the FOXP3Δ3 Isoform in Aggressive Bladder Cancer Mediates Differentiation and Cisplatin Chemotherapy Resistance
(Submitter supplied) This study shows for the first time that the FOXP3Δ3 isoform is preferentially expressed in bladder cancer and induces a more aggressive and luminal isoform is preferentially expressed in bladder cancer and induces a more aggres...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL11154 9 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE81nnn/GSE81157/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA320752
Series		Accession: GSE81157	ID: 200081157

191. A five-gene expression signature to predict progression in T1G3 bladder cancer
(Submitter supplied) To analyze the gene expression profiles of progressive and non-progressive T1G3 bladder cancer (BCa) patients in order to develop a gene expression signature to predict tumour progression. Multicenter, retrospective study of form...
Organism:	Homo sapiens

data/bladder_cancer_GEO.txt  view on Meta::CPAN

252. Recurrent inactivation of STAG2 in bladder cancer is not associated with aneuploidy
(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:	Homo sapiens
Type:		SNP genotyping by SNP array; Genome variation profiling by SNP array
Platforms: GPL6983 GPL6984 51 Samples
FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE51nnn/GSE51641/
Series		Accession: GSE51641	ID: 200051641

253. Recurrent inactivation of STAG2 in bladder cancer is not associated with aneuploidy [GPL6983]
(Submitter supplied) STAG2 is a novel UBC tumor suppressor acting through mechanisms that are different from its role to prevent aneuploidy
Organism:	Homo sapiens
Type:		SNP genotyping by SNP array; Genome variation profiling by SNP array
Platform: GPL6983 45 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE51nnn/GSE51640/
Series		Accession: GSE51640	ID: 200051640

254. Recurrent inactivation of STAG2 in bladder cancer is not associated with aneuploidy [GPL6984]
(Submitter supplied) STAG2 is a novel UBC tumor suppressor acting through mechanisms that are different from its role to prevent aneuploidy
Organism:	Homo sapiens
Type:		SNP genotyping by SNP array; Genome variation profiling by SNP array
Platform: GPL6984 6 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE51nnn/GSE51589/
Series		Accession: GSE51589	ID: 200051589

255. A microRNA-based primary tumor site classification of liver core biopsies
(Submitter supplied) To develop a classifier based on microRNAs for primary tumor site identification of liver core biopsies and to explore the influence of surrounding normal liver tissue on classification.
Organism:	Homo sapiens
Type:		Expression profiling by RT-PCR
Platform: GPL17391 333 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE51nnn/GSE51429/
Series		Accession: GSE51429	ID: 200051429

256. Comparative mRNA and microRNA expression profiling of three genitourinary cancers reveals common hallmarks and cancer-specific molecular events
(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing
Platform: GPL9115 68 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE31nnn/GSE31617/
Series		Accession: GSE31617	ID: 200031617

257. microRNA expression of cancer and matched adjacent tissues from 7 testicular germ cell tumors and 10 transitional cell carcinomas of bladder
(Submitter supplied) Genome-wide gene expression profile using deep sequencing technologies can drive the discovery of cancer biomarkers and therapeutic targets. Such efforts are often limited to profiling the expression signature of either mRNA or m...
Organism:	Homo sapiens
Type:		Non-coding RNA profiling by high throughput sequencing
Platform: GPL9115 34 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE31nnn/GSE31616/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA154993
Series		Accession: GSE31616	ID: 200031616

258. mRNA expression of cancer and matched adjacent tissues of 7 testicular germ cell tumors and 10 transitional cell carcinomas of bladder
(Submitter supplied) Genome-wide gene expression profile using deep sequencing technologies can drive the discovery of cancer biomarkers and therapeutic targets. Such efforts are often limited to profiling the expression signature of either mRNA or m...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL9115 34 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE31nnn/GSE31614/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA154991
Series		Accession: GSE31614	ID: 200031614

259. Leukocyte-adjusted epigenome-wide association studies of blood from solid tumor patients
(Submitter supplied) Epigenome-wide association study (EWAS) of blood samples from a case-control study of bladder cancer. The Illumina Infinium 27k Human DNA methylation Beadchip v1.2 was used to obtain DNA methylation profiles across approximately ...
Organism:	Homo sapiens
Type:		Methylation profiling by array
Platform: GPL8490 428 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE50nnn/GSE50409/
Series		Accession: GSE50409	ID: 200050409

260. Bladder cancer: analysis of miRNA-mRNA interactions
(Submitter supplied) Background: MicroRNAs (miRNAs) are small non-coding RNAs that regulate gene expression. Their abilyty to affect multiple gene pathways by targeting to various mRNAs makes them to an interesting class of regulators. The interplay ...
Organism:	Homo sapiens
Type:		Expression profiling by array; Non-coding RNA profiling by array
Platforms: GPL8227 GPL13497 48 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE40nnn/GSE40355/
Series		Accession: GSE40355	ID: 200040355

261. Genome-wide analysis of gene expression in bladder cancer cell lines 253JB-V and UM-UC13 exposed to bortezomib
(Submitter supplied) We previously showed that the proteasome inhibitor bortezomib (Velcade) induces cell death in a subset of human bladder cancer cell lines. Heat shock protein 72 kDa (Hsp72) is the major cytosolic stress-inducible molecular chaper...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL6947 8 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE46nnn/GSE46132/
Series		Accession: GSE46132	ID: 200046132

262. DNA copy number gain at 1q23.3 is associated with poor survival in metastatic bladder cancer
(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:	Homo sapiens
Type:		Genome variation profiling by SNP array; Genome variation profiling by genome tiling array
Platforms: GPL10150 GPL15793 128 Samples
FTP download: GEO (CEL, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE39nnn/GSE39282/
Series		Accession: GSE39282	ID: 200039282

263. DNA copy number gain at 1q23.3 is associated with poor survival in metastatic bladder cancer [Agilent]
(Submitter supplied) Metastatic urothelial carcinoma (UC) of the bladder is associated with multiple somatic copy number alterations (SCNAs). We evaluated SCNAs to identify predictors of poor survival in patients with metastatic UC treated with plati...
Organism:	Homo sapiens
Type:		Genome variation profiling by genome tiling array
Platform: GPL10150 94 Samples
FTP download: GEO (BED, PDF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE39nnn/GSE39281/
Series		Accession: GSE39281	ID: 200039281

264. DNA copy number gain at 1q23.3 is associated with poor survival in metastatic bladder cancer [Affymetrix]
(Submitter supplied) Metastatic urothelial carcinoma (UC) of the bladder is associated with multiple somatic copy number alterations (SCNAs). We evaluated SCNAs to identify predictors of poor survival in patients with metastatic UC treated with plati...
Organism:	Homo sapiens
Type:		Genome variation profiling by SNP array
Platform: GPL15793 34 Samples
FTP download: GEO (BED, CEL, PDF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE39nnn/GSE39280/
Series		Accession: GSE39280	ID: 200039280

265. Frequent truncating mutations of STAG2 in bladder cancer
(Submitter supplied) Here we report the discovery of truncating mutations of the gene encoding the cohesin subunit STAG2, which regulates sister chromatid cohesion and segregation, in 36% of papillary non-invasive urothelial carcinomas and 16% of inv...
Organism:	Homo sapiens
Type:		Genome variation profiling by genome tiling array; Genome variation profiling by SNP array; SNP genotyping by SNP array
Platform: GPL16131 12 Samples
FTP download: GEO (CEL, CYCHP) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE41nnn/GSE41581/
Series		Accession: GSE41581	ID: 200041581

266. Genomic Characterization of Bladder Cancer Cell Lines using CGH Arrays
(Submitter supplied) Genomic rearrangements involving different chromosome translocation in bladder cancer cell lines and in primary tumor samples
Organism:	Homo sapiens
Type:		Genome variation profiling by array
Platform: GPL5477 4 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE30nnn/GSE30754/

data/bladder_cancer_GEO.txt  view on Meta::CPAN

FTP download: GEO (TXT, XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE19nnn/GSE19423/
Series		Accession: GSE19423	ID: 200019423

317. Identification of miR-145 or miR-133a target genes in bladder cancer
(Submitter supplied) We recently identified a subset of down-regulated miRNAs such as miR-145 and miR-133a in bladder cancer. Cell growth inhibitions occurred in miR-145 and miR-133a transfectants compared with the controls, suggesting that both miRN...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL4133 4 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE19nnn/GSE19717/
Series		Accession: GSE19717	ID: 200019717

318. Gene expression profiles of bladder cancer cell lines
(Submitter supplied) Bladder cancer is among the five most common malignancies worldwide, and it is the second most common tumor of the genitourinary tract and the second most common cause of death in patients with genitourinary tract malignancies. T...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL4133 5 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE19nnn/GSE19716/
Series		Accession: GSE19716	ID: 200019716

319. Chromosomal aberrations of human bladder cancer cell lines
(Submitter supplied) In order to identify putative targets in human bladder cancer (BC) cell lines, a survey of parallel chromosomal alterations and gene expression studies in 5 BC cell lines were performed using array-CGH and microarray techniques. ...
Organism:	Homo sapiens
Type:		Genome variation profiling by genome tiling array
Platform: GPL4091 5 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE19nnn/GSE19714/
Series		Accession: GSE19714	ID: 200019714

320. Identification of LY6K target genes in bladder cancer
(Submitter supplied) Five bladder cancer (BC) cell lines were subjected to high-resolution array comparative genomic hybridization (CGH), which contained about 244,000 probes. The focus was on the typical gain locus of 8q24.3, which has not been stud...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL4133 1 Sample
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE19nnn/GSE19712/
Series		Accession: GSE19712	ID: 200019712

321. DNA methylation distinguishes pathologically normal human tissues
(Submitter supplied) Epigenetic control of gene transcription is critical for normal human development and cellular differentiation. While alterations of epigenetic marks such as DNA methylation have been linked to cancers and many other human diseas...
Organism:	Homo sapiens
Type:		Methylation profiling by array
Platform: GPL9183 217 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE19nnn/GSE19434/
Series		Accession: GSE19434	ID: 200019434

322. Bladder Cancer 40 Cell Lines
(Submitter supplied) 40 bladder cancer cell lines were profiled with their genome-wide gene expression patterns using Affymetrix HG-U133A chips. Keywords: bladder cancer cell line expression profiling
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL96 40 Samples
FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE5nnn/GSE5845/
Series		Accession: GSE5845	ID: 200005845

323. microRNA-101 represses EZH2 in cancer
(Submitter supplied) To determine the phenotypic overlap between restoring miR-101 expression in bladder cancer cells and knocking down EZH2.
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL5799 12 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE13nnn/GSE13674/
Series		Accession: GSE13674	ID: 200013674

324. J82 human bladder cell line treated with frankincense oil
(Submitter supplied) Frankincense oil is prepared from aromatic hardened wood resin obtained by tapping Boswellia trees.  For thousands of years, it has been important both socially and economically as an ingredient in incense and perfumes.  Frankinc...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL6883 5 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE14nnn/GSE14002/
Series		Accession: GSE14002	ID: 200014002

325. Array Comparative Genomic Hybridization of Merkel Cell Carcinoma Tumors
(Submitter supplied) Array-CGH profiles of Merkel cell carcinoma tumors  Keywords: fresh frozen and formalin fixed paraffin embedded primary tumor, nodal and metastasis merkel cell carcinoma tumor samples
Organism:	Homo sapiens
Type:		Genome variation profiling by genome tiling array
Platform: GPL2879 25 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE13nnn/GSE13239/
Series		Accession: GSE13239	ID: 200013239

326. Gene expression analysis of whole blood samples from patients with single and double primary tumors and healthy controls
(Submitter supplied) RNA samples from the blood of patients with double tumors, single tumors and from healthy  control subjects are studied by gene expression analysis using the whole genome microarray  platform AB1700 from Applied Biosystems.  Gene...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL2986 62 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE11nnn/GSE11545/
Series		Accession: GSE11545	ID: 200011545

327. Comparison of Normal Prostate Fibroblasts Overexpressing Cyclin D1 and Carcinoma Associated Fibroblasts
(Submitter supplied) The cyclin D1 oncogene encodes the regulatory subunit of a holoenzyme that phosphorylates and inactivates the Rb protein and promotes progression through G1 to S phase of the cell cycle. Several prostate cancer cell lines and a s...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL4768 4 Samples
FTP download: GEO (GPR) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE6nnn/GSE6936/
Series		Accession: GSE6936	ID: 200006936

328. Prediction of response and survival following chemotherapy in patients with advanced bladder cancer
(Submitter supplied) BACKGROUND Cisplatin-containing chemotherapy is the standard of care for patients with locally advanced and metastatic transitional cell carcinoma of the urothelium.  The response rate is around 50% and tumor derived molecular pr...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL96 30 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE5nnn/GSE5287/
Series		Accession: GSE5287	ID: 200005287

329. Analysis of clinical bladder cancer classification according to microarray expression profiles
(Submitter supplied) Using Affymetrix microarray technology we analyzed the gene expression profiles of the most important pathological categories of bladder cancer in order to detect potential marker genes. Applying an unsupervised cluster algorithm...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL570 12 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE7nnn/GSE7476/
Series		Accession: GSE7476	ID: 200007476

330. Gene expression signatures predict outcome in non-muscle invasive bladder carcinoma - a multi-center validation study
(Submitter supplied) Background Clinically useful molecular markers predicting the clinical course of patients diagnosed with non-muscle invasive bladder cancer are needed to improve treatment outcome. Methods We used custom designed oligonucleotide ...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL4060 808 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE5nnn/GSE5479/
Series		Accession: GSE5479	ID: 200005479

331. Molecular Features of Hormone-Refractory Prostate Cancer Cells by Genome-wide Gene-expression Profiles
(Submitter supplied) To characterize the molecular features of clinical (Hormone-Refractory Prostate Cancers) HRPCs, we generated the precise gene-expression profiles of 25 clinical HRPCs and 10 hormone-sensitive prostate cancers (HSPCs) by genome-wi...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL4747 35 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE6nnn/GSE6811/
Series		Accession: GSE6811	ID: 200006811

332. Role of E2F3 expression in human bladder and prostate cancer cells
(Submitter supplied) Amplification and overexpression of the E2F3 gene at  6p22 in human bladder cancer is associated with increased  tumour stage, grade and proliferation index, and in  prostate cancer E2F3 overexpression is linked to tumour  aggres...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL3904 3 Samples
FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE6nnn/GSE6131/
Series		Accession: GSE6131	ID: 200006131

333. Amplification and overexpression of E2F3 in human bladder cancer.
(Submitter supplied) We demonstrate that, in human bladder cancer, amplification of the E2F3 gene, located at 6p22, is associated with overexpression of its encoded mRNA transcripts and high levels of expression of E2F3 protein. Immunohistochemical a...
Organism:	Homo sapiens
Type:		Genome variation profiling by array
Platforms: GPL4483 GPL4482 GPL3898 10 Samples
FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE6nnn/GSE6123/