App-GeoCancerPrognosticDatasetsRetriever

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data/bladder_cancer_GEO.txt  view on Meta::CPAN

Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing
Platform: GPL18573 8 Samples
FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE159nnn/GSE159824/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA670653
Series		Accession: GSE159824	ID: 200159824

2. Genome-wide DNA methylation study in bladder cancer
(Submitter supplied) Methylation profiling in Bladder cancer : adjacent normal tissue vs bladder tumor tissue
Organism:	Homo sapiens
Type:		Methylation profiling by genome tiling array
Platform: GPL9767 18 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE171nnn/GSE171369/
Series		Accession: GSE171369	ID: 200171369

3. Gene expression analysis of bladder cancer cell line, its BCG resistant and AR knockdown subline.
(Submitter supplied) BCG resistant and AR konckdown subline from UMUC3 were compared with the original cell line.
Organism:	Homo sapiens
Type:		Expression profiling by array
Platforms: GPL19251 GPL16686 10 Samples
FTP download: GEO (CEL, CHP) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE148nnn/GSE148322/
Series		Accession: GSE148322	ID: 200148322

4. Nitazoxanide impairs mitophagy flux through ROS-mediated mitophagy initiation and lysosomal dysfunction in bladder cancer
(Submitter supplied) Bladder cancer is one of the most common malignancy in the urinary tract with high recurrence and drug resistance in clinics. Alternative treatments from existing drugs might be a promising strategy. Nitazoxanide (NTZ), an FDA-ap...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL18573 2 Samples
FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE171nnn/GSE171129/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA718525
Series		Accession: GSE171129	ID: 200171129

5. Activation of cGAS-STING signal to inhibit the proliferation of bladder cancer: the immune effect of cisplatin
(Submitter supplied) our findings indicated a cisplatin dependent cGAS-STING signal in bladder cancer. This signal could be enhanced by accumulation of dsDNA and chromatin dissociated cGAS and would finally recruit infiltration DCs and CD8+ T cells i...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL16791 6 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE165nnn/GSE165767/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA697857
Series		Accession: GSE165767	ID: 200165767

6. Trp53 mutation in Krt5-expressing basal cells facilitates the development of basal squamous-like invasive bladder cancer in the chemical carcinogenesis of mouse bladder
(Submitter supplied) We investigated the genetic characteristics of the mouse tumors. First, we investigated whether mouse BBN-induced bladder cancers displayed distinct gene expression profiles according to the cell of origin or pre-induced Trp53 mu...
Organism:	Mus musculus
Type:		Expression profiling by array
Platform: GPL21163 22 Samples
FTP download: GEO (GCT, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE147nnn/GSE147709/
Series		Accession: GSE147709	ID: 200147709

7. Different gene expression profiles between de novo and progressive muscle invasive bladder cancer: prognostic implications
(Submitter supplied) INTRODUCTION: Progressive muscle-invasive bladder cancer (MIBC) has more aggressive behavior than de novo MIBC. This study aimed to ascertain the differences in gene expression profiles between both MIBC groups and to identify pr...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL14951 26 Samples
FTP download: GEO (TXT, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149582/
Series		Accession: GSE149582	ID: 200149582

8. The Androgen Receptor Directly Regulates CD44 Expression in Androgen Sensitive Bladder Cancer
(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:	Homo sapiens
Type:		Expression profiling by array; Genome binding/occupancy profiling by high throughput sequencing
Platforms: GPL15207 GPL16791 18 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE147nnn/GSE147940/
Series		Accession: GSE147940	ID: 200147940

9. The Androgen Receptor Directly Regulates CD44 Expression in Androgen Sensitive Bladder Cancer [ChIP-seq]
(Submitter supplied) To study androgen receptor transcriptomic activation in the presence of androgen in bladder cancer cell lines.  A uniquely derived AR expressing clone of the bladder cancer cell line UMUC3 was derived and validated prior to ChIP-...
Organism:	Homo sapiens
Type:		Genome binding/occupancy profiling by high throughput sequencing
Platform: GPL16791 12 Samples
FTP download: GEO (BED, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE147nnn/GSE147939/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA622581
Series		Accession: GSE147939	ID: 200147939

10. The Androgen Receptor Directly Regulates CD44 Expression in Androgen Sensitive Bladder Cancer [gene expression]
(Submitter supplied) To study androgen receptor transcriptomic activation in the presence of androgen in bladder cancer cell lines.  A uniquely derived AR expressing clone of the bladder cancer cell line UMUC3 was derived and validated prior to micro...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL15207 6 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE147nnn/GSE147938/
Series		Accession: GSE147938	ID: 200147938

11. Genome-wide map of cohesin positions in RT112 bladder cancer cells
(Submitter supplied) Bladder cancer is one of the most common genitourinary malignancies worldwide. It is a heterogeneous disease at the clinical, pathological, and genetic levels.   In an exome-sequencing study of bladder cancer, we identified genes...
Organism:	Homo sapiens
Type:		Genome binding/occupancy profiling by high throughput sequencing
Platform: GPL18573 7 Samples
FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE111nnn/GSE111913/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA438528
Series		Accession: GSE111913	ID: 200111913

12. Expression profiling by RNA-seq for identifying genes associated with prognosis in non-muscle-invasive bladder cancer.
(Submitter supplied) Non-muscle-invasive bladder cancer (NMIBC) is clinically heterogeneous, and many NMIBC patients fail to respond to treatment and frequently experience disease relapse. We aim to identify a prognostic and predictive signature of t...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL16791 32 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE163nnn/GSE163899/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA688091
Series		Accession: GSE163899	ID: 200163899

13. Bacterial effect on gene expression
(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:	Homo sapiens; Mus musculus
Type:		Expression profiling by array
Platforms: GPL13667 GPL11180 48 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE162nnn/GSE162253/
Series		Accession: GSE162253	ID: 200162253

14. Expression data from mice bladder with MB49-induced cancer treated with Lon protease
(Submitter supplied) MYC has been named the quintessential oncogene and is deregulated in the majority of human cancers. Still, finding c-MYC inhibitors for therapeutic use has been problematic and MYC itself has long been viewed as “undruggable”...
Organism:	Mus musculus
Type:		Expression profiling by array
Platform: GPL11180 19 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE162nnn/GSE162251/
Series		Accession: GSE162251	ID: 200162251

15. A bladder cancer patient-derived xenograft reflects aggressive growth dynamics in vivo and in organoids
(Submitter supplied) A MIBC patient with aggressive disease course was selected for ex vivo model establishment and growth dynamic studies. After standard neoadjuvant treatment with gemcitabine and cisplatin, cystectomy was performed, and excised uro...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL16791 10 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE155nnn/GSE155007/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA648129
Series		Accession: GSE155007	ID: 200155007

16. RNA-Seq of circHIPK3 knockdown (KD) samples in UMUC3 and J82
(Submitter supplied) We profile gene expression upon circHIPK3 KD in two bladder cancer cell lines UMUC3 and J82
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL18573 60 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE148nnn/GSE148824/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA625910
Series		Accession: GSE148824	ID: 200148824

17. Transcriptomic Analysis Of Micropapillary High Grade T1 Urothelial Bladder Cancer
(Submitter supplied) Management of high-grade T1 (HGT1) micropapillary bladder cancer (MPBC) is controversial. An accurate genomic characterization might help predict outcome. We analyze the transcriptomic profile of MPBC in a clinically annotated HG...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL18573 87 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE136nnn/GSE136401/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA562495
Series		Accession: GSE136401	ID: 200136401

18. In vitro model of urothelial cell differentiation using bladder cancer cell lines with various degree of epithelial mesenchymal transition
(Submitter supplied) Cancer cell lines  frequently lose epithelial characters (epithelial mesenchymal transition or EMT) but some cell lines retain them without EMT. Here we performed microarray analysis of two different types of human bladder cancer...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL22439 9 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE164nnn/GSE164828/
Series		Accession: GSE164828	ID: 200164828

19. miR-193 inhibits bladder cancer progression by targeting N-myc
(Submitter supplied) Growing evidence has indicated that miR-193 is involved in the initiation and progression of malignancy, such as bladder cancer, hepatocellular carcinoma, renal cell carcinoma, and colorectal cancer. Nevertheless, the mechanisms ...
Organism:	Homo sapiens
Type:		Expression profiling by RT-PCR
Platform: GPL29594 6 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE164nnn/GSE164682/
Series		Accession: GSE164682	ID: 200164682

20. Subtype-associated epigenomic landscape and 3D genome structure in bladder cancer
(Submitter supplied) Muscle-invasive bladder cancers are characterized by their distinct expression of luminal and basal genes, which could be used to predict key clinical features such as disease progression and overall survival. Transcriptionally, ...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing; Other; Genome binding/occupancy profiling by high throughput sequencing
Platform: GPL9052 51 Samples
FTP download: GEO (MCOOL, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE148nnn/GSE148079/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA623018
Series		Accession: GSE148079	ID: 200148079

21. Gene expression profile of bladder cancer cell lines treated with Mitomycin C
(Submitter supplied) Mitomycin C (MMC) is the gold standard treatment for non-muscle invasive bladder cancer (NMIBC). We aimed to evaluate in bladder cancer cell lines (T24, 5637, TCC-SUP and CLS-439) the transcriptomic response to MMC treatment. We ...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL18573 24 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE151nnn/GSE151505/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA636096
Series		Accession: GSE151505	ID: 200151505

22. Next-generation RNA sequencing of murine bladder cancer cells isolated from P53/PTEN KO tumors at different stages of the disease.
(Submitter supplied) Cancer cells from P53/PTEN KO bladder tumors collected at 5, 9, and 13 weeks after adenoviral vector injection.
Organism:	Mus musculus
Type:		Expression profiling by high throughput sequencing
Platform: GPL17021 9 Samples
FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE138nnn/GSE138327/
Series		Accession: GSE138327	ID: 200138327

23. In vivo transcriptome profiling of control and GANAB-KD UMUC3 bladder carcinoma cells [bulk]
(Submitter supplied) Carcinoma cells achieve malignant progression and therapy resistance through de-differentiation. While differentiation therapy has proven to be highly efficient in acute promyelocytic leukemia, this therapeutic strategy has not b...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL24676 6 Samples
FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE164nnn/GSE164042/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA688702
Series		Accession: GSE164042	ID: 200164042

24. In vivo transcriptome profiling of control and GANAB-KD UMUC3 bladder carcinoma cells [scRNA-Seq]
(Submitter supplied) Carcinoma cells achieve malignant progression and therapy resistance through de-differentiation. While differentiation therapy has proven to be highly efficient in acute promyelocytic leukemia, this therapeutic strategy has not b...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL24676 2 Samples
FTP download: GEO (MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE164nnn/GSE164041/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA688700
Series		Accession: GSE164041	ID: 200164041

25. FOXA1 suppresses cancer immunity independent of DNA binding
(Submitter supplied) Exclusion of lymphocytes from tumors is a major barrier for effective immuno- and chemo-therapy of cancer. We found that FOXA1 overexpression inversely correlates with expression of antigen processing and presentation and interfe...
Organism:	Homo sapiens
Type:		Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing
Platform: GPL20301 51 Samples
FTP download: GEO (BW, XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE142nnn/GSE142221/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA596242
Series		Accession: GSE142221	ID: 200142221

26. Gene expression data from UMUC-14 following FGFR3 knock-down using FGFR3 siRNAs
(Submitter supplied) To better understand the molecular mechanisms underlying altered-FGFR3 oncogenic activity in bladder carcinomas, we made use of  UMUC-14 cell lines, which endogenously expressed a mutated activated form of FGFR3 (FGFR3-S249C), th...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL22321 6 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE125nnn/GSE125547/
Series		Accession: GSE125547	ID: 200125547

27. Transcriptome Analysis of Bladder Cancer Cell Persistently Infected by Newcastle disease virus (NDV)
(Submitter supplied) This project seeks to determine if there is a difference in expression between  bladder cancer cells vs NDV-resistant bladder cancer cells.This result provides insight of the orchestrated transcriptomic changes that occur in the ...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL10904 6 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE163nnn/GSE163881/
Series		Accession: GSE163881	ID: 200163881

28. Super-enhancer LncRNA expression profile in human bladder cancer cell line and human urothelial immortalized cell line
(Submitter supplied) To further explore the differential expression profile of super-enhancer long noncoding RNA (LncRNA) in human bladder cancer, we have employed super-enhancer lncRNA microarray expression profiling as a discovery platform to ident...
Organism:	Homo sapiens
Type:		Expression profiling by array; Non-coding RNA profiling by array
Platform: GPL24592 2 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE159nnn/GSE159682/
Series		Accession: GSE159682	ID: 200159682

29. RBMX suppresses tumorigenicity and progression of bladder cancer via interaction with hnRNP A1 protein to regulate PKM alternative splicing
(Submitter supplied) Bladder cancer (BCa) is one of the most common malignant tumors of urinary system and has high incidence rate and mortality but there is a lack of effective treatment. Therefore, an in-depth study of the molecular mechanisms invo...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL24676 6 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE150nnn/GSE150548/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA632747
Series		Accession: GSE150548	ID: 200150548

30. Next Generation Sequencing  Quantitative Analysis of altered expression of genes in lncRNA ELNAT1 knockdown bladder cancer cells
(Submitter supplied) Bladder cancer (BCa) is one of the most common genitourinary malignancies worldwide, with a high recurrence and mortality rate. Previous study revealed that EV-packaged ELNAT1 played an important role in the occurrence and develo...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL16791 6 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156461/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA658030
Series		Accession: GSE156461	ID: 200156461

31. Microarray profiling analysis of circular RNAs expression in bladder cancer
(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:	Homo sapiens
Type:		Non-coding RNA profiling by array
Platforms: GPL27765 GPL27766 12 Samples
FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE140nnn/GSE140587/
Series		Accession: GSE140587	ID: 200140587

32. Microarray profiling analysis of circular RNAs expression in bladder cancer [lncRNA profiling]
(Submitter supplied) Background: Growing evidence has shown the association of long noncoding RNA/microRNA/mRNA is implicated in tumor initiation, development, and progression. Long noncoding RNA (lncRNA) HAND2-AS1 exhibits anti-cancer effects in div...
Organism:	Homo sapiens
Type:		Non-coding RNA profiling by array
Platform: GPL27766 6 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE140nnn/GSE140585/
Series		Accession: GSE140585	ID: 200140585

33. Microarray profiling analysis of circular RNAs expression in bladder cancer [miRNA profiling]
(Submitter supplied) Background: Growing evidence has shown the association of long noncoding RNA/microRNA/mRNA is implicated in tumor initiation, development, and progression. Long noncoding RNA (lncRNA) HAND2-AS1 exhibits anti-cancer effects in div...
Organism:	Homo sapiens
Type:		Non-coding RNA profiling by array
Platform: GPL27765 6 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE140nnn/GSE140584/
Series		Accession: GSE140584	ID: 200140584

34. Evaluation of mRNA expression changes upon TRAF4 mis-expression in HT1376 and T24 bladder cancer cell lines
(Submitter supplied) TRAF4 is highly expressed in the epithelial bladder cancer cell line, HT1376 and poorly expressed in the mesenchymal cell line, T24. We evaluated the genetic changes in HT1376 upon TRAF4 knockdown using two independent shRNAs tar...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL23227 20 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE161nnn/GSE161509/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA678557
Series		Accession: GSE161509	ID: 200161509

35. exosomal ELNAT1 promotes lymphatic metastasis of bladder cancer
(Submitter supplied) The crosstalk between tumor cells and LECs triggers the LN metastasis in bladder cancer (BCa), but the underlying mechanisms are not completely understood. Previously, we identified that BCa-secreted extracellular vesicles (EVs)-...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing
Platform: GPL16791 10 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156308/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA657414
Series		Accession: GSE156308	ID: 200156308

36. RNA-Seq of circCDYL knockdown (KD) samples in HepG2, J82, and UMUC3 cells and of GRWD1, IGF2BP1, and IGF2BP2 knockdown (KD) samples in J82 and UMUC3 cells
(Submitter supplied) We profile gene expression upon circCDYL KD in HepG2 cells and in two bladder cancer cell lines J82 and UMUC3 as well as upon knockdown of the RNA binding proteins (RBP) GRWD1, IGF2BP1, and IGF2BP2 in J82 and UMUC3
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL18573 36 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE146nnn/GSE146726/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA611768
Series		Accession: GSE146726	ID: 200146726

37. Development and validation of a NanoString BASE47 bladder cancer gene classifier
(Submitter supplied) Purpose: We sought to develop and evaluate a diagnostic classifier of UC subtype with the goal of accurate classification from clinically available specimens. Methods: Tumor samples from 52 patients with high-grade UC were profil...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL18573 52 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE160nnn/GSE160693/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA674023
Series		Accession: GSE160693	ID: 200160693

38. Landscape of genomic alterations in Indian Urinary Bladder cancer patients
(Submitter supplied) Urinary bladder is an open system and is under constant carcinogenic insults leading to chromosomal aberrations. Chronic retention of urine in the bladder is   considered one of the reasons for initiation of bladder cancer. Here,...
Organism:	Homo sapiens
Type:		Genome binding/occupancy profiling by genome tiling array; Genome binding/occupancy profiling by SNP array
Platform: GPL11363 12 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122514/
Series		Accession: GSE122514	ID: 200122514

39. Tet-ZFP36L1 in 6 hours and 24 hours
(Submitter supplied) ZFP36L1 is a tandem zinc-finger RNA-binding protein that recognizes conserved Adenylate-Uridylate-rich Elements (AREs) located in 3' untranslated regions (UTRs) to mediate RNA decay. We hypothesized that ZFP36L1 is a negative reg...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL23227 6 Samples
FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE136nnn/GSE136181/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA561514
Series		Accession: GSE136181	ID: 200136181

40. Silencing of ZFP36L1 using siRNA
(Submitter supplied) ZFP36L1 is a tandem zinc-finger RNA-binding protein that recognizes conserved Adenylate-Uridylate-rich Elements (AREs) located in 3' untranslated regions (UTRs) to mediate RNA decay. We hypothesized that ZFP36L1 is a negative reg...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL23227 2 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE136nnn/GSE136180/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA561515
Series		Accession: GSE136180	ID: 200136180

41. RNA pull down assay of GST-ZFP36L1 (wildtype and mutant)
(Submitter supplied) ZFP36L1 is a tandem zinc-finger RNA-binding protein that recognizes conserved Adenylate-Uridylate-rich Elements (AREs) located in 3' untranslated regions (UTRs) to mediate RNA decay. We hypothesized that ZFP36L1 is a negative reg...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL23227 3 Samples
FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE136nnn/GSE136179/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA561512
Series		Accession: GSE136179	ID: 200136179

42. Urothelial-to-Neural Lineage Plasticity Drives Progression to Small Cell Bladder Cancer
(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:	Homo sapiens
Type:		Non-coding RNA profiling by array; Expression profiling by array
Platforms: GPL17915 GPL10558 44 Samples
FTP download: GEO (IDAT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE145nnn/GSE145261/
Series		Accession: GSE145261	ID: 200145261

43. Urothelial-to-Neural Lineage Plasticity Drives Progression to Small Cell Bladder Cancer [RNA]
(Submitter supplied) We report a comprehensive molecular analysis of 22 cases of SCC
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL10558 22 Samples
FTP download: GEO (IDAT, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE145nnn/GSE145260/
Series		Accession: GSE145260	ID: 200145260

44. Urothelial-to-Neural Lineage Plasticity Drives Progression to Small Cell Bladder Cancer [miRNA]
(Submitter supplied) We report a comprehensive molecular analysis of 22 cases of SCC
Organism:	Homo sapiens
Type:		Non-coding RNA profiling by array
Platform: GPL17915 22 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE145nnn/GSE145259/
Series		Accession: GSE145259	ID: 200145259

45. Loss of UTX/KDM6A and the activation of FGFR3 converge to regulate differentiation gene expression programs in bladder cancer
(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing
Platform: GPL18573 54 Samples
FTP download: GEO (BROADPEAK, BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157091/
Series		Accession: GSE157091	ID: 200157091

46. Loss of UTX/KDM6A and the activation of FGFR3 converge to regulate differentiation gene expression programs in bladder cancer [ChIP-seq]
(Submitter supplied) Bladder cancer prognosis is closely linked to the underlying differentiation state of the tumor, ranging from the less aggressive and most differentiated luminal tumors to the more aggressive and least differentiated basal tumors...
Organism:	Homo sapiens
Type:		Genome binding/occupancy profiling by high throughput sequencing
Platform: GPL18573 24 Samples
FTP download: GEO (BROADPEAK, BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157090/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA660044
Series		Accession: GSE157090	ID: 200157090

47. Loss of UTX/KDM6A and the activation of FGFR3 converge to regulate differentiation gene expression programs in bladder cancer [RNA-seq]
(Submitter supplied) Bladder cancer prognosis is closely linked to the underlying differentiation state of the tumor, ranging from the less aggressive and most differentiated luminal tumors to the more aggressive and least differentiated basal tumors...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL18573 30 Samples
FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157089/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA660043
Series		Accession: GSE157089	ID: 200157089

48. Novel circRNA_103758-miRNA-19b-3p-CIT axis is associated with proliferation and migration of bladder cancer via RhoA-ROCK signaling pathway
(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing; Non-coding RNA profiling by array
Platforms: GPL21825 GPL20301 16 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE147nnn/GSE147985/
Series		Accession: GSE147985	ID: 200147985

49. Novel circRNA_103758-miRNA-19b-3p-CIT axis is associated with proliferation and migration of bladder cancer via RhoA-ROCK signaling pathway [microarray]
(Submitter supplied) To determine the circRNA expression profile in BCa and matched non-tumor tissues, we uesed circRNA microArray analysis form Arraystar to examine the expression of circRNAs in BCa and matched non-tumor tissues.
Organism:	Homo sapiens
Type:		Non-coding RNA profiling by array
Platform: GPL21825 8 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE147nnn/GSE147984/
Series		Accession: GSE147984	ID: 200147984

50. Novel circRNA_103758-miRNA-19b-3p-CIT axis is associated with proliferation and migration of bladder cancer via RhoA-ROCK signaling pathway [RNA-seq]
(Submitter supplied) Purpose:The purpose of this study is to investigate the potential mechanisms that triggering the onset of bladder cancer and to screen differential expressed genes. Methods: We screened differentially expressed genes with the dat...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL20301 8 Samples
FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE147nnn/GSE147983/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA622744
Series		Accession: GSE147983	ID: 200147983

51. High-sensitive circulating microRNA panel for early detection of hepatocellular carcinoma
(Submitter supplied) A serum miRNA combination could be a powerful classifier for the detection of hepatocellular carcinoma.  Keywords: Non-coding RNA profiling by array
Organism:	Homo sapiens
Type:		Non-coding RNA profiling by array
Platform: GPL21263 1817 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE113nnn/GSE113740/
Series		Accession: GSE113740	ID: 200113740

52. STAG2 loss-of-function affects short-range genomic contacts and modulates urothelial differentiation in bladder cancer cells
(Submitter supplied) Cohesin exists in two variants, containing either STAG1 or STAG2. STAG2 is one of the most commonly mutated genes in human cancer, and a major bladder cancer tumor suppressor. Little is known about how its inactivation contribute...
Organism:	Homo sapiens
Type:		Other
Platform: GPL18573 3 Samples
FTP download: GEO (HIC) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE155nnn/GSE155380/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA649548
Series		Accession: GSE155380	ID: 200155380

53. In-Vitro Identification and In-Vivo Confirmation of DNA Methylation Biomarkers for Urothelial Cancer
(Submitter supplied) DNA-methylation targets specific for urothelial cancer (UC) were identified by genome-wide methylation difference analysis of human urothelial (RT4, J82, 5637), prostate (LNCAP, DU-145, PC3) and renal (RCC-KP, CAKI-2, CAL-54) can...
Organism:	Homo sapiens
Type:		Methylation profiling by genome tiling array
Platform: GPL13534 12 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149387/
Series		Accession: GSE149387	ID: 200149387

54. Determine the effects on the transcriptome of depleting STAG2 in RT112, a bladder cancer cell line.
(Submitter supplied) Determine the effects on the transcriptome of depleting STAG2 in RT112, a bladder cancer cell line.
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL16791 9 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE154nnn/GSE154878/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA647617
Series		Accession: GSE154878	ID: 200154878

55. Identification of Differential Tumor Subtypes of T1 Bladder Cancer
(Submitter supplied) Stage T1 bladder cancers have the highest progression and recurrence rates of all non-muscle invasive bladder tumors. T1 tumors are heterogeneous; while most T1 patients are treated with BCG, many will progress and die from bladd...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL20301 99 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE154nnn/GSE154261/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA645686
Series		Accession: GSE154261	ID: 200154261

56. Osteomodulin and proline/arginine-rich end leucine rich repeat protein contribute to bladder cancer initiation and progression by controling transition between epithelial and mesenchymal cells through regulation of TGF-b and EGF pathways
(Submitter supplied) Two secreted proteins, osteomodulin (OMD) and proline/arginine-rich end leucine repeat protein (PRELP), are specifically expressed in bladder epithelial umbrella cells. At the initiation of human bladder cancer, their expression ...
Organism:	Mus musculus
Type:		Expression profiling by high throughput sequencing
Platform: GPL19057 10 Samples
FTP download: GEO (CSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE144nnn/GSE144295/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA603325
Series		Accession: GSE144295	ID: 200144295

57. FiTAc-seq: Fixed-Tissue ChIP-seq for H3K27Ac profiling and super-enhancer analysis on FFPE tissues
(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:	Homo sapiens; Mus musculus
Type:		Genome binding/occupancy profiling by high throughput sequencing
4 related Platforms 26 Samples
FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE140nnn/GSE140808/
Series		Accession: GSE140808	ID: 200140808

58. FiTAc-seq: Fixed-Tissue ChIP-seq for H3K27Ac profiling and super-enhancer analysis on FFPE tissues [human]
(Submitter supplied) Fixed-Tissue ChIP-seq for H3K27Ac profiling (FiTAc-seq) is an epigenetic method for profiling active enhancers and promoters in FFPE tissues. We previously developed a modified ChIP-seq protocol (FiT-seq) for chromatin profiling ...
Organism:	Homo sapiens
Type:		Genome binding/occupancy profiling by high throughput sequencing
Platforms: GPL24676 GPL18573 13 Samples
FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE140nnn/GSE140806/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA590996
Series		Accession: GSE140806	ID: 200140806

59. TET1 is a tumour suppressor that inhibits bladder cancer progression
(Submitter supplied) Ten-Eleven Translocation 1 (TET1) is a member of methylcytosine dioxygenase, which catalyse 5-methylcytosine (5-mC) to 5-hydroxymethylcytosine (5-hmC) that promote the demethylation process. The diminished expression of TET1 prot...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL20795 4 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137646/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA566145
Series		Accession: GSE137646	ID: 200137646

60. Intratumoral CD4+ T cells mediate anti-tumor cytotoxicity in human bladder cancer
(Submitter supplied) Responses to anti-PD-1 immunotherapy occur but are infrequent in bladder cancer. The specific T cells that mediate tumor rejection are unknown. T cells from human bladder tumors and non-malignant tissue were assessed with single-...
Organism:	Homo sapiens
Type:		Other; Expression profiling by high throughput sequencing
Platform: GPL16791 28 Samples
FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149652/
Series		Accession: GSE149652	ID: 200149652

61. RT-PCR analysis of long non-coding RNAs expression in adriamycin-resistant osteosarcoma cells
(Submitter supplied) One of the major challenges for chemotherapy is appearance of resistance to compounds. Despite several singling pathways have been implicated in development of Adriamycin (ADM) resistance, mechanisms involved in ADM-resistant ost...
Organism:	Homo sapiens
Type:		Expression profiling by RT-PCR
Platform: GPL27925 6 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE142nnn/GSE142230/
Series		Accession: GSE142230	ID: 200142230

62. Circular RNA circRIMS1 acts as a sponge of miR-433-3p to promote bladder cancer progression by regulating CCAR1 expression
(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing; Other
Platform: GPL20795 9 Samples
FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE150nnn/GSE150145/
Series		Accession: GSE150145	ID: 200150145

63. Circular RNA circRIMS1 acts as a sponge of miR-433-3p to promote bladder cancer progression by regulating CCAR1 expression (mRNA)
(Submitter supplied) Background: Circular RNAs (circRNAs), a subclass of noncoding RNAs, have been reported to be involved in the progression of various diseases. However, the exact role of circRIMS1, also termed hsa_circ_0132246, in human bladder ca...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing; Other
Platform: GPL20795 6 Samples
FTP download: GEO (XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE150nnn/GSE150143/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA631256
Series		Accession: GSE150143	ID: 200150143

64. Circular RNA circRIMS1 acts as a sponge of miR-433-3p to promote bladder cancer progression by regulating CCAR1 expression (circRNA)
(Submitter supplied) Background: Circular RNAs (circRNAs), a subclass of noncoding RNAs, have been reported to be involved in the progression of various diseases. However, the exact role of circRIMS1, also termed hsa_circ_0132246, in human bladder ca...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing; Other
Platform: GPL20795 3 Samples
FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE150nnn/GSE150142/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA631252
Series		Accession: GSE150142	ID: 200150142

65. Identification of Scrt1, a new transcriptional regulator of   beta-cell maturation using chromatin accessibility variations
(Submitter supplied) Pancreatic beta-cells are highly specialized cells that produce and release insulin in response to nutrients, hormones and neurotransmitters. Glucose-induced insulin secretion, a unique feature of fully differentiated beta-cells,...
Organism:	Rattus norvegicus
Type:		Expression profiling by high throughput sequencing

data/bladder_cancer_GEO.txt  view on Meta::CPAN

127. Genome-wide expression profiling in bladder cancer cells
(Submitter supplied) Differential gene expression profiling in PPP2R2A depleted RT-112 cells was performed using Human Genome U133 Plus 2.0 Array
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL570 6 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE97nnn/GSE97943/
Series		Accession: GSE97943	ID: 200097943

128. ETV5 silencing in bladder cancer cell line 97-7
(Submitter supplied) We hypothesized that ETV5 may be a mediator of the oncogenic effects of mutant FGFR3 in bladder cancer cells ETV5 was silenced by shRNA in the bladder cancer cell line 97-7 to investigate effect on phenotype. To identify downstre...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL570 12 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122306/
Series		Accession: GSE122306	ID: 200122306

129. Circulating miRNA panels for specific and early detection in bladder cancer
(Submitter supplied) A serum miRNA combination could be a powerful classifier for the detection of patients with bladder cancer.
Organism:	Homo sapiens
Type:		Non-coding RNA profiling by array
Platform: GPL21263 972 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE113nnn/GSE113486/
Series		Accession: GSE113486	ID: 200113486

130. LncRNA and mRNA expression patterns in bladder cancer patients with lymph nodes metastasis.
(Submitter supplied) Bladder cancer (BCa) is one of the most common cancers in urinary system worldwide.  And lymphatic metastasis is one of the most common route and its status associates with prognosis for BCa patients. However, the precise molecul...
Organism:	Homo sapiens
Type:		Expression profiling by array; Non-coding RNA profiling by array
Platform: GPL21827 6 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE121nnn/GSE121738/
Series		Accession: GSE121738	ID: 200121738

131. Cdk4-inhibitor induces tumor regression of Bladder cancer in vivo
(Submitter supplied) Cdk4/6 inhibitors have shown to increase overall survival in hormone-positive breast tumors, but whether other solid tumors could respond to these inhibitors has not yet defined. Here we show that Palbociclib (a Cdk4/6 specific i...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL17586 18 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE105nnn/GSE105402/
Series		Accession: GSE105402	ID: 200105402

132. Cdk4-inhibitor induces tumor regression of Bladder cancer in vivo using a metastatic mouse model
(Submitter supplied) Cdk4/6 inhibitors have shown to increase overall survival in hormone-positive breast tumors, but whether other solid tumors could respond to these inhibitors has not yet defined. Here we show that Palbociclib (a Cdk4/6 specific i...
Organism:	Mus musculus
Type:		Expression profiling by array
Platform: GPL20258 20 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE100nnn/GSE100716/
Series		Accession: GSE100716	ID: 200100716

133. Comprehensive molecular classification of bladder cancer reveals distinct prognostic subgroups with different sensitivities to immunotherapy
(Submitter supplied) Previous studies successfully revealed molecular characteristics of bladder cancers, dealing with non-muscle invasive bladder cancer and muscle invasive bladder cancer, separately. At the molecular level, however, there is a grea...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL10558 145 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE120nnn/GSE120736/
Series		Accession: GSE120736	ID: 200120736

134. genome-wide mapping of FoxA target sites in human bladder cancer cells (RT4)
(Submitter supplied) In order to identify direct target genes of FoxA1 in RT4 cells, we carried out genome-wide mapping of FoxA1.
Organism:	Homo sapiens
Type:		Genome binding/occupancy profiling by high throughput sequencing
Platform: GPL16791 4 Samples
FTP download: GEO (BED, TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE86nnn/GSE86918/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA342995
Series		Accession: GSE86918	ID: 200086918

135. Discordant molecular subtype classification of muscle-invasive bladder cancer and matched lymph-node metastases occurs preferentially in the Basal/Squamous-like subtype.
(Submitter supplied) By combining molecular pathology, mRNA profiling, and exome-sequencing we describe muscle-invasive bladder tumors and matched lymph-node metastases.
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL6244 28 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE101nnn/GSE101723/
Series		Accession: GSE101723	ID: 200101723

136. Expression data for T24 bladder cancer cell line - scrambled, SOX4-KD and SOX4 overexpression
(Submitter supplied) We knocked down SOX4 in T24 cell and created 3 cell lines: T24-scrambled, T24-SOX4-knockdown and T24-SOX4-rescue and compared gene expression changes SOX4 is a developmental transcription factor that is overexpressed in as many a...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL23126 10 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE118nnn/GSE118572/
Series		Accession: GSE118572	ID: 200118572

137. Naturally-occurring canine invasive urothelial carcinoma harbors luminal and basal transcriptional subtypes found in human muscle invasive bladder cancer 
(Submitter supplied) RNA-seq was used to identify basal and luminal subtypes in canine bladder cancer. In addition to larger gene-sets, a smaller panel of genes was developed to stratify canine samples into either basal or luminal subtype prospective...
Organism:	Canis lupus familiaris
Type:		Expression profiling by high throughput sequencing
Platform: GPL24229 33 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE110nnn/GSE110661/
Series		Accession: GSE110661	ID: 200110661

138. Differentially expressed genes after miRNA or siRNA transfection in human cancer cell lines III
(Submitter supplied) To identify differentially expressed genes by anti cancer treatments (microRNAs or siRNAs) in human cancer, several cell lines ( pancreatic cancer, renal cell carcinoma, oral squamous cell carcinoma, prostate cancer and bladder c...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL20844 8 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE115nnn/GSE115801/
Series		Accession: GSE115801	ID: 200115801

139. Differentially expressed genes after miRNA or inhibitor transfection in human cancer cell lines
(Submitter supplied) To identify differentially expressed genes by anti cancer treatments (microRNAs or inhibitor) in human cancer, several cell lines (prostate cancer, bladder cancer and renal cancer) were subjected to Agilent whole genome microarra...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL20844 8 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE115nnn/GSE115800/
Series		Accession: GSE115800	ID: 200115800

140. Next Generation Sequencing  Quantitative Analysis of altered expression of genes in lncRNA LNMAT1 knockdown bladder cancer cells
(Submitter supplied) Bladder cancer is one of the most common genitourinary malignancies worldwide, with approximately 429,800 new cases and 165,100 deaths annually in the world. LNMAT1 is reported to play diverse roles in the development and progres...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL16791 6 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE106nnn/GSE106637/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA417490
Series		Accession: GSE106637	ID: 200106637

141. Long noncoding RNA LNMAT1 promotes lymphatic metastasis in bladder cancer
(Submitter supplied) Long non-coding RNAs (lncRNAs) are a large class of non-protein-coding transcripts that are over 200nt in length. LncRNAs have emerged as key regulator of biological process involved in the development and progression of bladder ...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL16791 20 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE106nnn/GSE106534/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA417154
Series		Accession: GSE106534	ID: 200106534

142. miR-200b is associated with cisplatin sensitivity in bladder cancer cells
(Submitter supplied) We aimed to clarify the role of miR-200b in cisplatin (CDDP) sensitivity in bladder cancer (BCa). CDDP resistant T24 cells (T24RC) were transfected with a miR mimic negative control (NC) or a miR-200b mimic, after which cells wer...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL16699 8 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE103nnn/GSE103250/
Series		Accession: GSE103250	ID: 200103250

143. Expression data from human T24 cells transfected with siNC or siNF90
(Submitter supplied) NF90 is a double-stranded RNA binding protein that takes part in microRNA biogenesis, as a competitor for the association of the microprocessor complex with pri-miRNAs, leading to a decrease in miRNA production. We want to know w...
Organism:	synthetic construct; Homo sapiens
Type:		Non-coding RNA profiling by array
Platform: GPL19117 4 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE82nnn/GSE82024/
Series		Accession: GSE82024	ID: 200082024

144. Trancriptional profiling of rat bladder after daily administration of Pioglitazone and Rosiglitazone in vivo (miRNA)
(Submitter supplied) The purpose of the study was to investigate the nongenotoxic carcinogenic effect of Pioglitazone. Pioglitazone is a PPARgamma agonist and is known to cause bladder tumours in male rats and an increase in the incidence of bladder ...
Organism:	Rattus norvegicus
Type:		Non-coding RNA profiling by array
Platform: GPL14860 119 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE68nnn/GSE68604/
Series		Accession: GSE68604	ID: 200068604

145. Trancriptional profiling of rat bladder after daily administration of Pioglitazone and Rosiglitazone in vivo (mRNA)
(Submitter supplied) The purpose of the study was to investigate the nongenotoxic carcinogenic effect of Pioglitazone. Pioglitazone is a PPARgamma agonist and is known to cause bladder tumours in male rats and an increase in the incidence of bladder ...
Organism:	Rattus norvegicus
Type:		Expression profiling by array
Platform: GPL15084 119 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE68nnn/GSE68592/
Series		Accession: GSE68592	ID: 200068592

146. Cell-free lncRNA expression signatures in urine serve as novel noninvasive biomarkers for diagnosis and recurrence prediction of bladder cancer
(Submitter supplied) To identify lncRNAs dysregulated in BC, we assessed the lncRNA expression profile in pooled urine samples of 10 BC patients and 10 controls by microarray. A total of 3093 lncRNAs determined differential expression (fold change>=2...
Organism:	Homo sapiens
Type:		Expression profiling by array; Non-coding RNA profiling by array
Platform: GPL16956 2 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE106nnn/GSE106074/
Series		Accession: GSE106074	ID: 200106074

147. Characterization and therapeutic targeting of the miR-21/PPP2R2A/ERK molecular circuit in bladder cancer
(Submitter supplied) MicroRNAs play an important role in the pathogenesis of different types of cancer including bladder cancer. MiR-21 has been identified to have an oncogenic function, while its inhibition suppresses tumor growth. Here, we followed...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL6480 28 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE97nnn/GSE97782/
Series		Accession: GSE97782	ID: 200097782

148. Identification of gene expression biomarkers in urine for the non-invasive detection of bladder cancer
(Submitter supplied) Fifty patient urine samples diagnosed as high-grade urothelial carcinoma (HGUC) or benign were evaluated for bladder cancer via urine cytology.  RNA was isolated and analyzed by microarray to identify a panel of biomarkers differ...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL10558 50 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE68nnn/GSE68020/
Series		Accession: GSE68020	ID: 200068020

149. Molecular subtype-specific immunocompetent models of high-grade urothelial carcinoma reveal differential neoantigen expression and response to immunotherapy
(Submitter supplied) We developed a UPPL (Upk3a-CreERT2;p53f/f;Ptenf/f;Rosa26LSL-Luc) mouse model of bladder cancer and compared it with the existing BBN (N-butyl-N-(4-hydroxybutyl)nitrosamine) mouse model of blader cancer. We cultured UPPL and BBN p...
Organism:	Mus musculus
Type:		Expression profiling by high throughput sequencing
Platform: GPL19057 36 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE112nnn/GSE112973/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA449647
Series		Accession: GSE112973	ID: 200112973

150. Tumor evolution and drug response in patient-derived organoid models of bladder cancer
(Submitter supplied) Bladder cancer is the fifth most prevalent cancer in the U.S., yet is understudied and relatively lacking in suitable models. Here we describe a biobank of patient-derived organoid lines that recapitulates the spectrum of human b...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL16791 42 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE103nnn/GSE103990/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA407895
Series		Accession: GSE103990	ID: 200103990

151. FGFR3 knock-down
(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:	Homo sapiens
Type:		Expression profiling by array
Platforms: GPL15236 GPL19109 11 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE84nnn/GSE84733/
Series		Accession: GSE84733	ID: 200084733

152. Gene expression data from RT112 following FGFR3 knock-down using FGFR3 siRNAs
(Submitter supplied) To better understand the molecular mechanisms underlying altered-FGFR3 oncogenic activity in bladder carcinomas, we made use of  RT112 cell lines, which were derived from a human bladder tumor and endogenously expressed the FGFR3...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL19109 5 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE84nnn/GSE84732/
Series		Accession: GSE84732	ID: 200084732

153. Gene expression data from MGH-U3 following FGFR3 knock-down using FGFR3 siRNAs
(Submitter supplied) To better understand the molecular mechanisms underlying altered-FGFR3 oncogenic activity in bladder carcinomas, we made use of  MGH-U3 cell lines, which were derived from a human bladder tumor and endogenously expressed a mutate...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL15236 6 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE84nnn/GSE84731/
Series		Accession: GSE84731	ID: 200084731

154. Next generation sequencing analysis of potential target genes of lncRNA BLACAT2
(Submitter supplied) Next generation sequencing analysis was performed to identify potential target genes of lncRNA BLACAT2.  Purified total RNA (3 μg) was used to deplete ribosomal RNA with Ribo-Zero rRNA Removal Kits (MRZMB126,Epicentre). Poly(A)+...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL16791 3 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE101nnn/GSE101287/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA393943
Series		Accession: GSE101287	ID: 200101287

155. Gene expression signatures for bladder cancer tissues and normal adjacent tissues.
(Submitter supplied) To identify aberrantly expressed long intergenic noncoding RNAs (lincRNAs) in muscle-invasive bladder cancer tissues compared with normal adjacent tissues, we have employed microarray expression profiling as a discovery platform ...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL14550 6 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE100nnn/GSE100926/
Series		Accession: GSE100926	ID: 200100926

156. Bladder cancer associated mutations in RXRA activate peroxisome proliferator-activated receptors
(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing
Platforms: GPL16791 GPL21290 34 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE107nnn/GSE107783/
Series		Accession: GSE107783	ID: 200107783

157. Bladder-cancer-associated mutations in RXRA activate peroxisome proliferator-activated receptors to drive urothelial proliferation
(Submitter supplied) RXRA regulates transcription as part of a heterodimer with 14 other nuclear receptors, including the peroxisome proliferator-activated receptors (PPARs).   Analysis from the TCGA raised the possibility that hyperactive PPAR signa...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platforms: GPL16791 GPL21290 18 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE107nnn/GSE107735/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA421314
Series		Accession: GSE107735	ID: 200107735

158. Bladder Cancer Associated Mutations in RXRA activate Peroxisome Proliferator-Activated Receptors to Drive Urothelial Proliferation
(Submitter supplied) RXRA regulates transcription as part of a heterodimer with 14 other nuclear receptors, including the peroxisome proliferator-activated receptors (PPARs).   Analysis from the TCGA raised the possibility that hyperactive PPAR signa...
Organism:	Homo sapiens
Type:		Genome binding/occupancy profiling by high throughput sequencing
Platform: GPL21290 16 Samples
FTP download: GEO (BROADPEAK, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE107nnn/GSE107734/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA421310
Series		Accession: GSE107734	ID: 200107734

159. Differentially expressed genes after miRNA or siRNA transfection in human cancer cell lines IV
(Submitter supplied) To identify differentially expressed genes by anti cancer treatments (microRNAs or siRNAs) in human cancer, several cell lines (pancreatic cancer, esophageal cancer and lung squamous cell carcinoma) were subjected to Agilent whol...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL20844 8 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE107nnn/GSE107008/
Series		Accession: GSE107008	ID: 200107008

160. Differentially expressed genes after miRNA or siRNA transfection in multiple human cancer cell lines
(Submitter supplied) To identify differentially expressed genes by anti cancer treatments (microRNAs or siRNAs) in human cancer, several cell lines ( pancreatic cancer, renal cell carcinoma, oral squamous cell carcinoma, prostate cancer and bladder c...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL20844 16 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE106nnn/GSE106791/
Series		Accession: GSE106791	ID: 200106791

161. Next Generation Sequencing of total RNA from 9 bladder cancer cell lines and 3 fractionated bladder cancer cell lines
(Submitter supplied) We profile the cell line expression of 279 circRNAs, that are highly expressed across 457 bladder cancer patient samples. Additionally, we investigate their cellular location in fractionated cell lines
Organism:	Homo sapiens
Type:		Non-coding RNA profiling by high throughput sequencing
Platforms: GPL18573 GPL11154 21 Samples
FTP download: GEO (TAB) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE100nnn/GSE100971/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA393566
Series		Accession: GSE100971	ID: 200100971

162. The phosphatidylinositol 3-kinase pathway as a potential therapeutic target in bladder cancer
(Submitter supplied) Activation of the phosphatidylinositol 3-kinase (PI3K) pathway occurs in over 40% of bladder urothelial cancers. The aim of this study is to determine the therapeutic potential, the underlying action and resistant mechanisms of d...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL21290 9 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE101nnn/GSE101419/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA394145
Series		Accession: GSE101419	ID: 200101419

163. Epigenetic silencing of the dual-role signal mediator, ANGPTL4 in tumor tissue and its overexpression in the urothelial carcinoma microenvironment
(Submitter supplied) To investigate the effect of ANGPTL4 expression on bladder cancer cells, expression profile was compared in BFTC 905 cells overexpressed with control vector vs human full length ANGPTL4 gene.
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL15520 2 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE102nnn/GSE102170/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA396903
Series		Accession: GSE102170	ID: 200102170

164. RNA sequencing data for 30 bladder cancer cell lines
(Submitter supplied) RNA-sequencing of a panel of urothelial cancer cells. The goal of the study is to examine the genome-wide expression profile in each of the 30 urothelial cancer cells tested in our laboratory.
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL16791 30 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE97nnn/GSE97768/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA382834
Series		Accession: GSE97768	ID: 200097768

165. Transcriptome differences during blebbishield emergency program and between cell lines that differ in tumorigenecity
(Submitter supplied) Blebbishields and spheres (transformed) from blebbishields after apoptosis were compared for gene expression changed from live RT4P cells. Highly tumorigenic cells RT4v6, PBSHMS, RT4P-BSE2 were compared for gene expression differ...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL10558 6 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE98nnn/GSE98980/
Series		Accession: GSE98980	ID: 200098980

166. Intravesical BCG induces CD4+ T Cell Expansion in a Clinically Relevant Immune Competent Model of Bladder Cancer
(Submitter supplied) Intravesical BCG Immunotherapy is the standard of care in treating non-muscle invasive bladder cancer, yet its mechanism of action remains elusive.  Both innate and adaptive immune responses have been implicated in BCG activity. ...
Organism:	Rattus norvegicus
Type:		Expression profiling by array
Platform: GPL17117 12 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE93nnn/GSE93940/
Series		Accession: GSE93940	ID: 200093940

167. UPF1 helicase promotes Tudor-SN-mediated miRNA decay
(Submitter supplied) The helicase activity of UPF1 remodels miRNPs so as to render miRNAs susceptible to Tudor-SN (TSN)-mediated miRNA decay
Organism:	Homo sapiens
Type:		Non-coding RNA profiling by high throughput sequencing
Platform: GPL16791 15 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE100nnn/GSE100068/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA390626
Series		Accession: GSE100068	ID: 200100068

168. Altered expression of genes in HOXD-AS1 knockdown prostate cancer cells
(Submitter supplied) Castration-resistant prostate cancer (CRPC) that arise after the failure of androgen deprivation therapy is a leading cause of deaths in prostate cancer patients. HOXD-AS1 is reported to play a role in bladder cancer and neurobla...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL15207 3 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE93nnn/GSE93928/
Series		Accession: GSE93928	ID: 200093928

169. Altered expression of genes in lncRNA-LBCS, hnRNPK and PTBP1 knockdown
(Submitter supplied) We identify a lncRNA which low expresses and regulates self-renewal of bladder cancer stem cell. So we named it lncRNA-LBCS (low expresses in bladder cancer stem cell). Further study finds that lncRNA-LBCS bind to hnRNPK and PTBP...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL16791 4 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE79nnn/GSE79832/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA314922
Series		Accession: GSE79832	ID: 200079832

170. High-throughput RNA sequencing on circular RNA profiles of human bladder cancer tissues and normal bladder tissues
(Submitter supplied) In order to find out circular RNAs profiles in human bladder cancer tissues and normal bladder tissues, we characterized circuclar RNA transcripts by performing RNA-Seq on ribosomal RNA-depleted total RNA from three pairs of huma...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL11154 6 Samples
FTP download: GEO (XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE97nnn/GSE97239/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA381054
Series		Accession: GSE97239	ID: 200097239

171. Transcriptomic analysis of an archived bladder cancer cohort
(Submitter supplied) Establishment and application of RNAseq based transcriptome analayis on an archivaed bladder cancer cohort.
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platforms: GPL11154 GPL15520 67 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE59nnn/GSE59483/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA255416
Series		Accession: GSE59483	ID: 200059483

172. miRNA sequencing of MIBC
(Submitter supplied) small RNA sequencing of 62 muscle-invasive bladder cancers
Organism:	Homo sapiens
Type:		Non-coding RNA profiling by high throughput sequencing
Platform: GPL17303 62 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE84nnn/GSE84525/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA329538
Series		Accession: GSE84525	ID: 200084525

173. Impact of molecular subtypes in muscle-invasive bladder cancer on predicting response and survival outcome to neoadjuvant chemotherapy: results from a multi-institutional validation study
(Submitter supplied) Four different molecular classifications of muscle-invasive bladder cancer (MIBC) based on gene expression have been proposed. With the ultimate goal of utilizing these molecular subtypes for personalized treatment, we investigat...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL22995 305 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE87nnn/GSE87304/
Series		Accession: GSE87304	ID: 200087304

174. Molecular classification of bladder cancer: global mRNA classification versus tumor cell phenotype classification.
(Submitter supplied) In this study gene expression profiles for 307 cases of advanced bladder cancers were compared to molecular phenotype at the tumor cell level. TUR-B tissue for RNA extraction was macrodissected from the close vicinity of the tiss...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL6244 307 Samples
FTP download: GEO (CEL, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE83nnn/GSE83586/
Series		Accession: GSE83586	ID: 200083586

175. Gene expression profile changes after ANLN knockdown in J82 cells
(Submitter supplied) To investigate gene expression profile changes after ANLN knockdown, we have employed whole genome microarray expression profiling as a discovery platform to identify genes that altered after ANLN knockdown, so as to explore the ...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL13497 6 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE81nnn/GSE81629/
Series		Accession: GSE81629	ID: 200081629

176. mRNA Expression data from bladder cancer and normal bladder tissue
(Submitter supplied) Bladder cancer (BCa) is one of the most common malignancy of the urinary tract. In order to improve the diagnosis, prevention and treatment of BCa, the details of molecular mechanisms underlying the tumorigenesis and development ...

data/bladder_cancer_GEO.txt  view on Meta::CPAN

FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE92nnn/GSE92675/
Series		Accession: GSE92675	ID: 200092675

178. Targeting metastasis stem cells through the fatty acid receptor CD36 (DID+, DID- and CD44DIM).
(Submitter supplied) Metastasis is the leading cause of cancer-related deaths. For most human cancers, the identity of the cells that initiate and promote metastasis is still unknown, hampering our ability to develop therapies to prevent or inhibit t...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL17077 15 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE83nnn/GSE83346/
Series		Accession: GSE83346	ID: 200083346

179. Targeting metastasis stem cells through the fatty acid receptor CD36
(Submitter supplied) Metastasis is the leading cause of cancer-related deaths. For most human cancers, the identity of the cells that initiate and promote metastasis is still unknown, hampering our ability to develop therapies to prevent or inhibit t...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL17077 13 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE83nnn/GSE83276/
Series		Accession: GSE83276	ID: 200083276

180. Targeting metastasis stem cells through the fatty acid receptor CD36 (II)
(Submitter supplied) Metastasis is the leading cause of cancer-related deaths. For most human cancers, the identity of the cells that initiate and promote metastasis is still unknown, hampering our ability to develop therapies to prevent or inhibit t...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL15207 10 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE72nnn/GSE72938/
Series		Accession: GSE72938	ID: 200072938

181. Targeting metastasis stem cells through the fatty acid receptor CD36 (I)
(Submitter supplied) Metastasis is the leading cause of cancer-related deaths. For most human cancers, the identity of the cells that initiate and promote metastasis is still unknown, hampering our ability to develop therapies to prevent or inhibit t...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL16699 15 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE72nnn/GSE72935/
Series		Accession: GSE72935	ID: 200072935

182. Differentially expressed mRNAs in bladder cancer stem cells
(Submitter supplied) Using the highly sensitive lncRNA array (Arraystar human lncRNA microarray), we screened the lncRNAs and mRNA abundant in bladder cancer stem cells sorted from three bladder cancer cell lines, compared to the bladder cancer cells...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL19023 6 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE90nnn/GSE90903/
Series		Accession: GSE90903	ID: 200090903

183. Enzalutamide inhibits proliferation of gemcitabine-resistant bladder cancer cells with increased androgen receptor expression
(Submitter supplied) Advanced bladder cancer is treated mainly with gemcitabine and cisplatin, but most patients eventually become resistance to these chemotherapeutic agents. Androgen receptor (AR) signaling has been implicated in bladder cancer as ...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL17077 6 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE77nnn/GSE77883/
Series		Accession: GSE77883	ID: 200077883

184. Gene expression analysis on arsenic-induced malignant transformation
(Submitter supplied) Arsenic is environmental risk factor and has been linked to urothelial carcinoma incidence.  Arsenic exposure-induced malignant transformed cells was established from normal urothelial cells by chronic arsenic exposure for 10 mon...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL10558 5 Samples
FTP download: GEO (IDAT, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE90nnn/GSE90023/
Series		Accession: GSE90023	ID: 200090023

185. A polymorphic intronic enhancer at 19q12 drives CCNE1 expression in bladder cancer cells
(Submitter supplied) We performed chromatin immunoprecipitation against a marker of active regulatory elements in bladder cancer cell lines to highlight regulatory regions specific to the bladder cancer genome. We then compared our dataset to other p...
Organism:	Homo sapiens
Type:		Genome binding/occupancy profiling by high throughput sequencing
Platform: GPL11154 6 Samples
FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE75nnn/GSE75286/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA303099
Series		Accession: GSE75286	ID: 200075286

186. Context-dependent role of ARF for response to chemotherapy in muscle invasive bladder cancer
(Submitter supplied) Gene expression profiling analysis (RNAseq) of mouse bladder epithelium from wildtype mice (Arf+/+; p53+/+; Pten+/+) or bladder tumors from Arf-wild-type (Arf+/+; p53f/f; Ptenf/f) or Arfnull (Arff/f; p53f/f; Ptenf/f) mice that ha...
Organism:	Mus musculus
Type:		Expression profiling by high throughput sequencing
Platform: GPL13112 24 Samples
FTP download: GEO (TXT, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE89nnn/GSE89823/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA353384
Series		Accession: GSE89823	ID: 200089823

187. Expression profiles of lncRNAs in bladder cancer
(Submitter supplied) To explore non-coding and coding expression profiling and their biological functions in bladder cancer, we surveyed the lncRNA and mRNA expression signature of bladder cancer and para-cancer tissues using microarray for four pati...
Organism:	Homo sapiens
Type:		Expression profiling by array; Non-coding RNA profiling by array
Platform: GPL16956 8 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE89nnn/GSE89006/
Series		Accession: GSE89006	ID: 200089006

188. Gene expression profile of micropapillary bladder cancer
(Submitter supplied) Analyses of mRNA gene expression profiling performed on 43 micropapillary bladder samples and 89 conventional urothelial carcinoma samples. Micropaillary tumors showed downregulation of miR-296 and activation of chromatin-remodel...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL14951 132 Samples
FTP download: GEO (IDAT, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE86nnn/GSE86411/
Series		Accession: GSE86411	ID: 200086411

189. Gene expression profile for SMYD3 knockdown in esophageal squamous carcinoma cell
(Submitter supplied) SET (Su) and MYND (myeloid-Nervy-DEAF-1) domain-containing protein (SMYD) is a methyltransferase family, including five members of which SMYD1, SMYD2, SMYD3 and SMYD4, has been found to play critical roles in human carcinogenesis...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL15207 2 Samples
FTP download: GEO (CEL, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE85nnn/GSE85419/
Series		Accession: GSE85419	ID: 200085419

190. Biased Expression of the FOXP3Δ3 Isoform in Aggressive Bladder Cancer Mediates Differentiation and Cisplatin Chemotherapy Resistance
(Submitter supplied) This study shows for the first time that the FOXP3Δ3 isoform is preferentially expressed in bladder cancer and induces a more aggressive and luminal isoform is preferentially expressed in bladder cancer and induces a more aggres...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL11154 9 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE81nnn/GSE81157/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA320752
Series		Accession: GSE81157	ID: 200081157

191. A five-gene expression signature to predict progression in T1G3 bladder cancer
(Submitter supplied) To analyze the gene expression profiles of progressive and non-progressive T1G3 bladder cancer (BCa) patients in order to develop a gene expression signature to predict tumour progression. Multicenter, retrospective study of form...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL14951 21 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE57nnn/GSE57813/
Series		Accession: GSE57813	ID: 200057813

192. Protein expression related with cell cycle control phosphorylation between TCCSUP and KSHV-infected TCCSUP
(Submitter supplied) Protein expression profile was analyzed by antibody array for cell cycle control phosphorylation with 238 antibodies with bladder cancer cell line, TCCSUP, and KSHV-infected TCCSUP cells.
Organism:	Homo sapiens
Type:		Protein profiling by protein array
Platform: GPL22247 2 Samples
FTP download: GEO (GPR) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE84nnn/GSE84926/
Series		Accession: GSE84926	ID: 200084926

193. Bladder cancer lncRNA expression profiling
(Submitter supplied) Using the highly sensitive lncRNA array, we screened the lncRNAs abundant in the human bladder cancer and Adjacent normal bladder tissues, and the function of differentially expressed lncRNAs were analyzed by bioinformatics.
Organism:	Homo sapiens
Type:		Non-coding RNA profiling by array
Platform: GPL15314 2 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE83nnn/GSE83955/
Series		Accession: GSE83955	ID: 200083955

194. Fixed tissue ChIP-Seq (FiT-Seq) of archived clinical samples reveals chromatin dynamics and tumor-specific enhancer profiles
(Submitter supplied) Analysis of cancer epigenomes has revealed important insights into key lineage determinants and oncogenic drivers. Chromatin immune-precipitation followed by next generation sequencing (ChIP-seq) has allowed the comprehensive map...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing
Platform: GPL18573 109 Samples
FTP download: GEO (BW, FPKM_TRACKING) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE73nnn/GSE73398/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA296916
Series		Accession: GSE73398	ID: 200073398

195. Differentially expressed genes after miRNA or siRNA transfection in human cancer cell lines II
(Submitter supplied) To identify differentially expressed genes by anti cancer treatments (microRNAs or siRNAs) in human cancer, several cell lines (pancreatic cancer, esophageal cancer, bladder cancer, prostate cancer, renal cell carcinoma and lung ...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL20844 32 Samples
FTP download: GEO (TXT, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE77nnn/GSE77790/
Series		Accession: GSE77790	ID: 200077790

196. Differentially expressed genes after miRNA or siRNA transfection in human cancer cell lines (II)
(Submitter supplied) To identify differentially expressed genes by anti cancer treatments (microRNAs or siRNAs) in human cancer, several cell lines (bladder cancer, prostate cancer, renal cell carcinoma, oral squamous cell carcinoma and lung squamous...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL16699 32 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE66nnn/GSE66498/
Series		Accession: GSE66498	ID: 200066498

197. Differentially expressed genes after miRNA or siRNA transfection in human cancer cell lines
(Submitter supplied) To identify differentially expressed genes by anti cancer treatments (microRNAs or siRNAs) in human cancer, several cell lines (bladder cancer, prostate cancer, hypopharyngeal cancer and lung squamous cell carcinoma) were subject...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL16699 24 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE56nnn/GSE56243/
Series		Accession: GSE56243	ID: 200056243

198. Hyperexpression of transcribed noncoding RNA containing ultraconserved genomic regions 8 promotes bladder tumorigenesis
(Submitter supplied) Ultraconserved regions (UCRs) are segments of the human genome located in both intragenic and intergenic regions that are highly conserved in orthologous regions of the human, rat, and mouse genomes. Their transcriptional product...
Organism:	Homo sapiens; Mus musculus
Type:		Non-coding RNA profiling by array
Platform: GPL20120 53 Samples
FTP download: GEO (GPR) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE68nnn/GSE68594/
Series		Accession: GSE68594	ID: 200068594

199. Toll-like Receptor 6 and Connective Tissue Growth Factor are significantly upregulated in mitomycin-C treated urothelial carcinoma cells under hydrostatic pressure stimulation
(Submitter supplied) Urothelial carcinoma (UC) is the most common histologic subtype of bladder cancer. The administration of mitomycin C (MMC) into bladder after transurethral resection of the bladder tumor (TURBT) is a common treatment strategy for...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL13607 4 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE45nnn/GSE45385/
Series		Accession: GSE45385	ID: 200045385

200. Expression data from rat orthotopic bladder cancer
(Submitter supplied) In the development and progression of bladder cancer, there are many genetic changes. We established a SD rat orthotopic bladder cancer model through intravesical instillation of N-methyl-nitrosourea and pathologic diagnosis is b...
Organism:	Rattus norvegicus
Type:		Expression profiling by array
Platform: GPL1355 9 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE76nnn/GSE76702/
Series		Accession: GSE76702	ID: 200076702

201. Cell-free DNA comprises an in vivo, genome-wide nucleosome footprint that informs its tissue(s)-of-origin
(Submitter supplied) Nucleosomes are the basic unit of packaging of eukaryotic chromatin, and nucleosome positioning can differ substantially between cell types. Here, we sequence 14.5 billion plasma-borne cell-free DNA (cfDNA) fragments (700-fold co...
Organism:	Homo sapiens
Type:		Genome binding/occupancy profiling by high throughput sequencing
Platform: GPL11154 60 Samples
FTP download: GEO (BB) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE71nnn/GSE71378/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA291063
Series		Accession: GSE71378	ID: 200071378

202. Expression data from UMUC3 cells transduced with non-targeted shRNA and shRNA specific to AGL
(Submitter supplied) Loss of Amylo-alpha-1-6-glucosidase-4-alpha-glucanotransferase (AGL) drives bladder cancer growth. Low AGL expression predicts poor patient outcome. Currently no specific therapeutically tractable targets/pathways exist that coul...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL13667 4 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE73nnn/GSE73456/
Series		Accession: GSE73456	ID: 200073456

203. Comparative gene expression analyses identify luminal and basal subtypes of canine invasive urothelial carcinoma that mimic patterns in human invasive bladder cancer
(Submitter supplied) Microarrays were used to assay the gene expression profile of canine normal bladder from non-tumor bearing dogs and compared to that of bladder tumor in dogs.
Organism:	Canis lupus familiaris
Type:		Expression profiling by array
Platform: GPL3738 22 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE66nnn/GSE66064/
Series		Accession: GSE66064	ID: 200066064

204. MVAC treated tumors
(Submitter supplied) validation of the survival outcomes from MVAC-Avastin treated tumors
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL14951 49 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE70nnn/GSE70691/
Series		Accession: GSE70691	ID: 200070691

205. a phase 2 trial of DDMVAC and bevacizumab in urothelial cancer
(Submitter supplied) A prognostic gene expression signature in chemotherapy-naïve bladder cancer is predictive of clinical outcomes from neoadjuvant chemotherapy
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL14951 61 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE69nnn/GSE69795/
Series		Accession: GSE69795	ID: 200069795

206. Integration analysis of three omics data using penalized regression methods: An application to bladder cancer
(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:	Homo sapiens
Type:		Expression profiling by array; Methylation profiling by array
Platforms: GPL8490 GPL6244 90 Samples
FTP download: GEO (CEL, IDAT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE71nnn/GSE71669/
Series		Accession: GSE71669	ID: 200071669

207. Integration analysis of three omics data using penalized regression methods: An application to bladder cancer (Methylation)
(Submitter supplied) Omics data integration is becoming necessary to investigate the still unknown genomic mechanisms of complex diseases. During the integration process, many challenges arise such as data heterogeneity, the smaller number of individ...
Organism:	Homo sapiens
Type:		Methylation profiling by array
Platform: GPL8490 46 Samples
FTP download: GEO (IDAT, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE71nnn/GSE71666/
Series		Accession: GSE71666	ID: 200071666

208. Integration analysis of three omics data using penalized regression methods: An application to bladder cancer (expression)
(Submitter supplied) Omics data integration is becoming necessary to investigate the still unknown genomic mechanisms of complex diseases. During the integration process, many challenges arise such as data heterogeneity, the smaller number of individ...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL6244 44 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE71nnn/GSE71576/
Series		Accession: GSE71576	ID: 200071576

data/bladder_cancer_GEO.txt  view on Meta::CPAN

238. Tumors with neoadjuvant chemotherapy
(Submitter supplied) Using whole genome mRNA expression profiling of primary human tumors and unsupervised hierarchical cluster analyses,  3 novel molecular subsets (basal, luminal and p53-like subsets) of muscle-invasive bladder cancer (MIBC) were i...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL14951 23 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE52nnn/GSE52219/
Series		Accession: GSE52219	ID: 200052219

239. Identification of distinct basal and luminal subsets of human bladder cancers with different sensitivities to frontline chemotherapy
(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:	Homo sapiens
Type:		Expression profiling by array
Platforms: GPL10558 GPL6947 GPL14951 349 Samples
FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE48nnn/GSE48277/
Series		Accession: GSE48277	ID: 200048277

240. Gene expression profiling of urothelial carcinoma
(Submitter supplied) Identification of bladder cancer subsets
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL14951 116 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE48nnn/GSE48276/
Series		Accession: GSE48276	ID: 200048276

241. Identification of subsets of urothelial carcinoma
(Submitter supplied) Identification of bladder cancer subsets
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL6947 142 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE48nnn/GSE48075/
Series		Accession: GSE48075	ID: 200048075

242. miR-634 restores drug sensitivity in resistant ovarian cancer cells by targeting the Ras-MAPK pathway
(Submitter supplied) The development of drug resistance is still a major impediment for the successful treatment of cancer, such as advanced stage ovarian cancer, which has a 5-year survival rate of only 30%. The molecular processes that contribute t...
Organism:	Homo sapiens
Type:		Non-coding RNA profiling by array
Platform: GPL16851 14 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE54nnn/GSE54665/
Series		Accession: GSE54665	ID: 200054665

243. A Pilot Study on the Potential of RNA-Associated to Urinary Vesicles as a Suitable Non-Invasive Source for Diagnostic Purposes in Bladder Cancer
(Submitter supplied) Abstract: Bladder cancer is one of the most common cancers and, together with prostate carcinoma, accounts for the majority of the malignancies of the genitourinary tract. Since prognosis ameliorates with early detection, it will...
Organism:	Homo sapiens
Type:		Expression profiling by array
Dataset: GDS5649 Platform: GPL10558 11 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE51nnn/GSE51843/
Series		Accession: GSE51843	ID: 200051843

244. Bladder cancer extracellular vesicles
Analysis of extracellular vesicles (EVs) from the urine of bladder cancer (BC) patients. Results provide insight into the potential use of mRNAs associated with urinary EVs as non-invasive diagnostic biomarkers of BC.
Organism:	Homo sapiens
Type:		Expression profiling by array, transformed count, 2 disease state sets
Platform: GPL10558 Series: GSE51843 11 Samples
FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/datasets/GDS5nnn/GDS5649/
DataSet		Accession: GDS5649	ID: 5649

245. H3K27me3 in human bladder transitional cell carcinoma cell line CL1207
(Submitter supplied) The H3K27me3 ChIP-seq data for the human bladder transitional cell carcinoma cell line CL1207 were generated in order to detect regions of regional epigenetic silencing in this cell line and test the performance of several peak c...
Organism:	Homo sapiens
Type:		Genome binding/occupancy profiling by high throughput sequencing
Platform: GPL16558 2 Samples
FTP download: GEO (BED, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE44nnn/GSE44438/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA189975
Series		Accession: GSE44438	ID: 200044438

246. Genome-wide screening and identification of long noncoding RNAs and their interaction with protein coding RNAs in bladder urothelial cell carcinoma
(Submitter supplied) To understand the role of long non-coding RNAs and interaction with coding RNAs in bladder urothelial cell carcinoma (BUCC), we performed genome-wide screening long non-coding RNAs and coding RNAs expression on primary BUCC tissu...
Organism:	Homo sapiens
Type:		Expression profiling by array; Non-coding RNA profiling by array
Platform: GPL13825 15 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE51nnn/GSE51493/
Series		Accession: GSE51493	ID: 200051493

247. Genome-wide analysis of gene expression in cancerous and normal human bladder tissues
(Submitter supplied) Analysis of differential gene expression in urothelium cancer cells compared to healthy bladder cells. The goal of researh was to discover any differences in signaling pathways regulation between cancer and normal cells and searc...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL6884 12 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE52nnn/GSE52519/
Series		Accession: GSE52519	ID: 200052519

248. Gene expression data from MGHU3 bladder cancer cells (FGFR3-Y375C) treated with TAK1 siRNA and/or PD173074
(Submitter supplied) The NFκB transcription factor is constitutively active in a number of hematologic and solid tumors, and many signaling pathways implicated in cancer are likely connected to NFκB activation.  A critical mediator of NFκB activit...
Organism:	Homo sapiens
Type:		Expression profiling by array
Dataset: GDS5023 Platform: GPL6244 12 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE52nnn/GSE52452/
Series		Accession: GSE52452	ID: 200052452

249. Fibroblast growth factor receptor inhibition effect on malignant urothelial cells deficient in TGFβ-activated kinase 1
Analysis of fibroblast growth factor receptor 3 (FGFR3)-positive, MGHU3 (Y375C) bladder cancer cells depleted for TGFβ-activated kinase 1 (TAK1) then treated with FGFR-specific PD173074 inhibitor. Results provide insight into the integration of TAK1...
Organism:	Homo sapiens
Type:		Expression profiling by array, transformed count, 2 agent, 2 genotype/variation sets
Platform: GPL6244 Series: GSE52452 12 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/datasets/GDS5nnn/GDS5023/
DataSet		Accession: GDS5023	ID: 5023

250. Genome-wide expression analysis of VprBP knockdown in DU145 cells
(Submitter supplied) VprBP has been implicated in transcriptionally silent chromatin formation and cell cycle regulation, but the molecular basis underlying such effects remains unclear. To investigate the role of VprBP on gene regulation, genme-wide...
Organism:	Homo sapiens
Type:		Expression profiling by array
Dataset: GDS4829 Platform: GPL10558 4 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE50nnn/GSE50414/
Series		Accession: GSE50414	ID: 200050414

251. VprBP depletion effect on prostate cancer cell line
Analysis of DU145 prostate cancer cells depleted for Vpr binding protein (VPRBP). VPRBP knockdown decreases histone H2A threonine 120 (H2AT120) phosphorylation and impairs the viability of DU145 cells. Results provide insight into the role of VprBP i...
Organism:	Homo sapiens
Type:		Expression profiling by array, count, 2 genotype/variation sets
Platform: GPL10558 Series: GSE50414 4 Samples
FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/datasets/GDS4nnn/GDS4829/
DataSet		Accession: GDS4829	ID: 4829

252. Recurrent inactivation of STAG2 in bladder cancer is not associated with aneuploidy
(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:	Homo sapiens
Type:		SNP genotyping by SNP array; Genome variation profiling by SNP array
Platforms: GPL6983 GPL6984 51 Samples
FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE51nnn/GSE51641/
Series		Accession: GSE51641	ID: 200051641

253. Recurrent inactivation of STAG2 in bladder cancer is not associated with aneuploidy [GPL6983]
(Submitter supplied) STAG2 is a novel UBC tumor suppressor acting through mechanisms that are different from its role to prevent aneuploidy
Organism:	Homo sapiens
Type:		SNP genotyping by SNP array; Genome variation profiling by SNP array
Platform: GPL6983 45 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE51nnn/GSE51640/
Series		Accession: GSE51640	ID: 200051640

254. Recurrent inactivation of STAG2 in bladder cancer is not associated with aneuploidy [GPL6984]
(Submitter supplied) STAG2 is a novel UBC tumor suppressor acting through mechanisms that are different from its role to prevent aneuploidy
Organism:	Homo sapiens
Type:		SNP genotyping by SNP array; Genome variation profiling by SNP array
Platform: GPL6984 6 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE51nnn/GSE51589/
Series		Accession: GSE51589	ID: 200051589

255. A microRNA-based primary tumor site classification of liver core biopsies
(Submitter supplied) To develop a classifier based on microRNAs for primary tumor site identification of liver core biopsies and to explore the influence of surrounding normal liver tissue on classification.
Organism:	Homo sapiens
Type:		Expression profiling by RT-PCR
Platform: GPL17391 333 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE51nnn/GSE51429/
Series		Accession: GSE51429	ID: 200051429

256. Comparative mRNA and microRNA expression profiling of three genitourinary cancers reveals common hallmarks and cancer-specific molecular events
(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing
Platform: GPL9115 68 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE31nnn/GSE31617/
Series		Accession: GSE31617	ID: 200031617

257. microRNA expression of cancer and matched adjacent tissues from 7 testicular germ cell tumors and 10 transitional cell carcinomas of bladder
(Submitter supplied) Genome-wide gene expression profile using deep sequencing technologies can drive the discovery of cancer biomarkers and therapeutic targets. Such efforts are often limited to profiling the expression signature of either mRNA or m...
Organism:	Homo sapiens
Type:		Non-coding RNA profiling by high throughput sequencing
Platform: GPL9115 34 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE31nnn/GSE31616/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA154993
Series		Accession: GSE31616	ID: 200031616

258. mRNA expression of cancer and matched adjacent tissues of 7 testicular germ cell tumors and 10 transitional cell carcinomas of bladder
(Submitter supplied) Genome-wide gene expression profile using deep sequencing technologies can drive the discovery of cancer biomarkers and therapeutic targets. Such efforts are often limited to profiling the expression signature of either mRNA or m...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL9115 34 Samples

data/bladder_cancer_GEO.txt  view on Meta::CPAN

FTP download: GEO (BED, CEL, PDF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE39nnn/GSE39280/
Series		Accession: GSE39280	ID: 200039280

265. Frequent truncating mutations of STAG2 in bladder cancer
(Submitter supplied) Here we report the discovery of truncating mutations of the gene encoding the cohesin subunit STAG2, which regulates sister chromatid cohesion and segregation, in 36% of papillary non-invasive urothelial carcinomas and 16% of inv...
Organism:	Homo sapiens
Type:		Genome variation profiling by genome tiling array; Genome variation profiling by SNP array; SNP genotyping by SNP array
Platform: GPL16131 12 Samples
FTP download: GEO (CEL, CYCHP) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE41nnn/GSE41581/
Series		Accession: GSE41581	ID: 200041581

266. Genomic Characterization of Bladder Cancer Cell Lines using CGH Arrays
(Submitter supplied) Genomic rearrangements involving different chromosome translocation in bladder cancer cell lines and in primary tumor samples
Organism:	Homo sapiens
Type:		Genome variation profiling by array
Platform: GPL5477 4 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE30nnn/GSE30754/
Series		Accession: GSE30754	ID: 200030754

267. DNA methylation and expression profiling study for bladder cancer
(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:	Homo sapiens
Type:		Expression profiling by array; Methylation profiling by array
Platforms: GPL8490 GPL6102 48 Samples
FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE37nnn/GSE37817/
Series		Accession: GSE37817	ID: 200037817

268. DNA methylation and expression profiling study for bladder cancer [methylation]
(Submitter supplied) The DNA methylation patterns associated with the development and progression of cancer. The aim of the present study was to identify novel methylation markers that can discriminate between normal and Non-muscle-invasive bladder c...
Organism:	Homo sapiens
Type:		Methylation profiling by array
Platform: GPL8490 24 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE37nnn/GSE37816/
Series		Accession: GSE37816	ID: 200037816

269. DNA methylation and expression profiling study for bladder cancer [gene expression]
(Submitter supplied) The DNA methylation patterns associated with the development and progression of cancer. The aim of the present study was to identify novel methylation markers that can discriminate between normal and Non-muscle-invasive bladder c...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL6102 24 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE37nnn/GSE37815/
Series		Accession: GSE37815	ID: 200037815

270. The investigational Aurora kinase A inhibitor MLN8237 induces defects in cell viability and cell cycle progression in mouse bladder cancer cells in vitro and in vivo
(Submitter supplied) PURPOSE: Despite over 70,000 new cases of bladder cancer in the United States annually, patients with advanced disease have a poor prognosis due to limited treatment modalities.  We evaluate the role of Aurora A, identified as an...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL9828 18 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE42nnn/GSE42089/
Series		Accession: GSE42089	ID: 200042089

271. Identification of nine genomic regions of amplification in bladder cancer, correlation with stage, and potential prognositic and therapeutic value
(Submitter supplied) We sought to test the hypothesis that ascertainment of genome-wide copy number alterations in bladder cancer may have value for clinical management. We performed a genome wide analysis of 164 bladder cancer samples and 27 bladder...
Organism:	Homo sapiens
Type:		Genome variation profiling by SNP array
Platform: GPL13270 80 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE44nnn/GSE44323/
Series		Accession: GSE44323	ID: 200044323

272. Downstream targets of ID1 transcription factor in Non-Small Cell Lung Carcinoma (NSCLC)
(Submitter supplied) ID-1, known as inhibitor of differentiation or a helix loop helix transcription factor which lack the basic DNA binding domain. It is known to bind to bHLH transcription factor and inhibit those bHLH to bind to the promoter thus ...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL570 10 Samples
FTP download: GEO (CEL, CHP) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE38nnn/GSE38944/
Series		Accession: GSE38944	ID: 200038944

273. linc-UBC1 physically associates with polycomb repressive complex 2 (PRC2) and acts as a negative prognostic factor for lymph node metastasis and survival in bladder cancer
(Submitter supplied) To identify aberrantly expressed long intergenic noncoding RNAs (lincRNAs) in bladder cancer tissues compared with normal adjacent tissues, we have employed microarray expression profiling as a discovery platform to identify linc...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL14550 6 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE45nnn/GSE45184/
Series		Accession: GSE45184	ID: 200045184

274. Transcriptional profiling of tumor-associated blood vessels in invasive bladder cancer
(Submitter supplied) Tumor-associated blood vessels differ from normal vessels at the morphological and molecular level. Proteins that are only present on tumor vessels may serve as biomarkers and as therapeutic targets for inhibition of angiogenesis...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL5175 10 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE41nnn/GSE41614/
Series		Accession: GSE41614	ID: 200041614

275. Molecular Biomarker Signature for Bladder Cancer Detection
(Submitter supplied) In this study we applied differential gene expression analysis to exfoliated human urothelia obtained from patients of known bladder disease status. Selected targets from the microarray data were validated in an independent set o...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL570 92 Samples
FTP download: GEO (CEL, CHP) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE31nnn/GSE31189/
Series		Accession: GSE31189	ID: 200031189

276. Transcriptome of normal, paracancerouse and cancerous bladder tissues based on RNA-Seq method
(Submitter supplied) In order to support our research of bladder cancer in human genome, we conducted massively parallel pyrosequencing of mRNAs (RNA-Seq) using normal, paracancerouse and cancerous human bladder tissues. We obtained a total of 30.0 m...
Organism:	Homo sapiens
Type:		Expression profiling by high throughput sequencing
Platform: GPL10999 3 Samples
FTP download: GEO (DIFF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE35nnn/GSE35178/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA150663
Series		Accession: GSE35178	ID: 200035178

277. Gene expression analysis in bladder cancer cells lines
(Submitter supplied) We have previously characterized two groups of bladder cancer cell lines based on their dependence on Hedgehog signaling for survival. Here, we examined the global gene expression in these cells. By comparing the gene expression ...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL10558 12 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE28nnn/GSE28255/
Series		Accession: GSE28255	ID: 200028255

278. Gene expression profiling of 19 bladder cancers from the University of Virginia
(Submitter supplied) Given the heterogeneity of disease evident from study of the presentation, histomorphology, disease course, and molecular lesions of bladder cancer, a cohort of 8 non-muscle invasive and 11 muscle invasive bladder cancers were pr...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL96 19 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE37nnn/GSE37317/
Series		Accession: GSE37317	ID: 200037317

279. Gene expression signatures in a human bladder cancer cell line SW780 transfected with miR-137 precursor molecule
(Submitter supplied) To clarify the effect of miRNAs, we carried out a gene expression microarray analysis of SW780 cells transfected with a miR-137 precursor or a negative control.  We found that 1,326 probe sets (1,016 unique genes) were downregula...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL13607 2 Samples

data/bladder_cancer_GEO.txt  view on Meta::CPAN

295. Identification of target genes of tumor suppressor microRNAs in human cancer
(Submitter supplied) To identify target genes of tumor suppressive microRNAs in human cancer, several cell lines (bladder cancer, prostate cancer, renal cell carcinoma, and head and neck squamous cell carcinoma) were subjected to Agilent whole genome...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platforms: GPL4133 GPL10332 13 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE24nnn/GSE24782/
Series		Accession: GSE24782	ID: 200024782

296. Combination of a novel gene expression signature with a clinical nomogram improves the prediction of survival in high-risk bladder cancer  
(Submitter supplied) Urothelial carcinoma of the bladder is characterized by significant variability in clinical outcomes depending on stage and grade. The addition of molecular information may improve our understanding of such heterogeneity and enha...
Organism:	Homo sapiens
Type:		Expression profiling by array
Dataset: GDS4456 Platform: GPL570 93 Samples
FTP download: GEO (CEL, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE31nnn/GSE31684/
Series		Accession: GSE31684	ID: 200031684

297. High-risk bladder cancer
Analysis of bladder cancer specimens from a high-risk population of patients who underwent radical cystectomy (Memorial Sloan-Kettering Cancer Center cohort). Results provide insight into the prediction of survival in high-risk urothelial carcinoma o...
Organism:	Homo sapiens
Type:		Expression profiling by array, transformed count, 2 disease state, 5 specimen sets
Platform: GPL570 Series: GSE31684 93 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/datasets/GDS4nnn/GDS4456/
DataSet		Accession: GDS4456	ID: 4456

298. Gene expression study for effectiveness of nicotinamide using chemically-induced mouse bladder cancer model
(Submitter supplied) The objective of this study was to evaluate the efficacy of nicotinamide in a N-butyl-N-(4-hydroxybutyl)-nitrosamine (BBN)-induced urinary bladder cancer model in mice, and to identify through gene expression profiling the molecu...
Organism:	Mus musculus
Type:		Expression profiling by array
Platform: GPL6099 20 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE21nnn/GSE21636/
Series		Accession: GSE21636	ID: 200021636

299. Integrated epigenome profiling of DNA methylation and gene expression in normal and malignant urothelial cells
(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:	Homo sapiens
Type:		Expression profiling by array; Methylation profiling by genome tiling array
Platforms: GPL570 GPL9767 9 Samples
FTP download: GEO (CEL, TAR, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE31nnn/GSE31866/
Series		Accession: GSE31866	ID: 200031866

300. Global methylation in normal and malignant urothelial cells
(Submitter supplied) We have created 5-methylcytosine profiles for normal and malignant urothelial cells.
Organism:	Homo sapiens
Type:		Methylation profiling by genome tiling array
Platform: GPL9767 6 Samples
FTP download: GEO (TAR, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE31nnn/GSE31865/
Series		Accession: GSE31865	ID: 200031865

301. Epigenome profiling of repressive histone modifications, DNA methylation and gene expression in normal and malignant urothelial cells
(Submitter supplied) To gain a more depth knowledge of repressive epigenetic gene regulation in UCC, we have profiled H3K9m3 and H3K27m3 in normal and malignant urothelial cells. We matched these profiles to those 5-methylcytosine and gene expression...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL570 3 Samples
FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE31nnn/GSE31864/
Series		Accession: GSE31864	ID: 200031864

302. Integrated epigenome profiling of repressive histone modifications, DNA methylation and gene expression in normal and malignant urothelial cells [ChIP-Seq data]
(Submitter supplied) We profiled two repressive histone modifications (H3K9m3 and H3K27m3) using ChIP-Seq in normal urothelial cells and cell lines representing non-invasive and invasive tumors.
Organism:	Homo sapiens
Type:		Genome binding/occupancy profiling by high throughput sequencing
Platform: GPL9052 6 Samples
FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE31nnn/GSE31125/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA144937
Series		Accession: GSE31125	ID: 200031125

303. Transcriptomes of human bladder cells and cells in bladder cancer
(Submitter supplied) Characterization of the gene expression profiles of specific cell populations of the human urinary bladder provides an important set of research tools for the study of cellular differentiation and the cancer process. The transcri...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL570 17 Samples
FTP download: GEO (CEL, CHP) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE30nnn/GSE30522/
Series		Accession: GSE30522	ID: 200030522

304. A DNA Methylation Fingerprint of  1,628 Human Samples
(Submitter supplied) DNA methylation is the best characterized of the different layers that make up the epigenetic setting. Most of the studies characterizing DNA methylation patterns have been restricted to particular genomic loci in a limited numbe...
Organism:	Homo sapiens
Type:		Methylation profiling by array
Platform: GPL9183 1628 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE28nnn/GSE28094/
Series		Accession: GSE28094	ID: 200028094

305. Bladder cancer microarrays
(Submitter supplied) Background: Current diagnosis and treatment of urinary bladder cancer (BC) has shown great progress with the utilization of microarrays. Purpose: Our goal was to identify common differentially expressed (DE) genes among clinicall...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL2895 15 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE27nnn/GSE27448/
Series		Accession: GSE27448	ID: 200027448

306. Hypermethylation of CpG Islands and Shores adjacent to mirtron and microRNA genes in bladder cancer
(Submitter supplied) We examined mirtron and miR expression in bladder cancer cell line following DNA Methyltransferase inhibition and normal urothelium using human Agilent microRNA microarrays.
Organism:	Homo sapiens
Type:		Non-coding RNA profiling by array
Platform: GPL10850 22 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE22nnn/GSE22380/
Series		Accession: GSE22380	ID: 200022380

307. Large scale screening for known fusion genes in cancer cell lines
(Submitter supplied) We have utilized a version 2.0 of our Fusion gene microarray (version 1.0 described by PMID: 19152679 and GEO, GPL8078) to screen cancer cell lines for known fusion genes We assembled a comprehensive database of published fusion ...
Organism:	Homo sapiens
Type:		Expression profiling by array; Genome variation profiling by array
Platform: GPL11054 67 Samples
FTP download: GEO (PAIR) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE24nnn/GSE24737/
Series		Accession: GSE24737	ID: 200024737

308. Analysis of transcriptome in ectopic versus orthotopic thyroid tissue.
(Submitter supplied) Congenital hypothyroidism from thyroid dysgenesis (CHTD) is a sporadic disease characterized by defects in the differentiation, migration or growth of thyroid tissue. Of these defects, incomplete migration resulting in ectopic th...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL6254 8 Samples
FTP download: GEO (GPR) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE16nnn/GSE16804/
Series		Accession: GSE16804	ID: 200016804

309. Time course for bladder UCC development in UPII-SV40Tag mice
(Submitter supplied) We have identified genes that are differentially expressed between the bladders of UPII-SV40Tag mice and their age-matched wild-type littermates at 3, 6, 20, and 30 weeks of age. These are ages that correspond to premalignant, ca...
Organism:	Mus musculus
Type:		Expression profiling by array
Dataset: GDS3887 Platform: GPL1261 15 Samples
FTP download: GEO (CEL, CHP) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE23nnn/GSE23845/
Series		Accession: GSE23845	ID: 200023845

310. Uroplakin II promoter-SV40Tag transgenic model for invasive bladder cancer: time course
Analysis of urothelium from UPII-SV40Tag transgenics at 3, 6, 20, 30 weeks of age, corresponding to premalignant, carcinoma in situ, early and later stage invasive transitional cell carcinoma of the bladder (TCC), respectively. Results provide insigh...
Organism:	Mus musculus
Type:		Expression profiling by array, count, 4 age, 2 genotype/variation sets
Platform: GPL1261 Series: GSE23845 15 Samples
FTP download: GEO (CEL, CHP) ftp://ftp.ncbi.nlm.nih.gov/geo/datasets/GDS3nnn/GDS3887/
DataSet		Accession: GDS3887	ID: 3887

311. H2A.Z Mapping During G0/G1 and Mitosis
(Submitter supplied) We report genome wide mapping of the histone variant H2A.Z during G0/G1 and mitosis in T24 bladder cancer cells.  The results show that the broad enrichment pattern of H2A.Z near transcription start sites of active genes is maint...
Organism:	Homo sapiens
Type:		Genome binding/occupancy profiling by high throughput sequencing
Platform: GPL9115 4 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE19nnn/GSE19568/
SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA122475
Series		Accession: GSE19568	ID: 200019568

312. Subtype classification, grading, and outcome prediction of urothelial carcinomas by combined mRNA profiling and aCGH
(Submitter supplied) [original title] Combined gene expression and genomic profiling define two intrinsic molecular subtypes of urothelial carcinoma and gene signatures for molecular grading and outcome.  In the present investigation we sought to ref...
Organism:	Homo sapiens
Type:		Expression profiling by array; Genome variation profiling by genome tiling array
Platforms: GPL4723 GPL3883 GPL5186 285 Samples
FTP download: GEO (GPR, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE19nnn/GSE19915/
Series		Accession: GSE19915	ID: 200019915

313. Discovery of microRNAs and other small RNAs in solid human tumors
(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:	Homo sapiens
Type:		Non-coding RNA profiling by array; Non-coding RNA profiling by high throughput sequencing
Platforms: GPL10067 GPL9186 40 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE20nnn/GSE20418/
Series		Accession: GSE20418	ID: 200020418

314. Discovery of microRNAs and other small RNAs in solid human tumors: sequencing
(Submitter supplied) MicroRNAs (miRNAs) are ~22 nucleotide-long, non-coding RNAs that regulate gene silencing. It is known that many human miRNAs are deregulated in numerous types of tumors. Here we report the sequencing of small RNAs from 23 breast,...
Organism:	Homo sapiens
Type:		Non-coding RNA profiling by high throughput sequencing
Platform: GPL9186 2 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE20nnn/GSE20417/
Series		Accession: GSE20417	ID: 200020417

315. Predective Value of Prognosis-Related Gene Expression Study in Primary Bladder Cancer
(Submitter supplied) This study aimed to identify the genetic signatures associated with disease prognosis in bladder cancer. We used 165 primary bladder cancer samples, 23 recurrent non-muscle invasive tumor tissues, 58 normal looking bladder mucosa...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL6102 256 Samples
FTP download: GEO (TXT, XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE13nnn/GSE13507/
Series		Accession: GSE13507	ID: 200013507

316. Predictive Gene Signatures as Strong Prognostic Indicators of the Effectiveness of BCG Immunotherapy
(Submitter supplied) Full title: Predictive Gene Signatures as Strong Prognostic Indicators of the Effectiveness of Bacillus Calmette–Guérin (BCG) Immunotherapy in Primary pT1 Bladder Cancers Intravesical BCG immunotherapy is effective in preventi...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL6102 48 Samples
FTP download: GEO (TXT, XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE19nnn/GSE19423/
Series		Accession: GSE19423	ID: 200019423

317. Identification of miR-145 or miR-133a target genes in bladder cancer
(Submitter supplied) We recently identified a subset of down-regulated miRNAs such as miR-145 and miR-133a in bladder cancer. Cell growth inhibitions occurred in miR-145 and miR-133a transfectants compared with the controls, suggesting that both miRN...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL4133 4 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE19nnn/GSE19717/
Series		Accession: GSE19717	ID: 200019717

318. Gene expression profiles of bladder cancer cell lines
(Submitter supplied) Bladder cancer is among the five most common malignancies worldwide, and it is the second most common tumor of the genitourinary tract and the second most common cause of death in patients with genitourinary tract malignancies. T...
Organism:	Homo sapiens
Type:		Expression profiling by array
Platform: GPL4133 5 Samples
FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE19nnn/GSE19716/
Series		Accession: GSE19716	ID: 200019716