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Specify the type of sequence on input (should not be needed in most
cases, but sometimes Bioperl cannot guess and complains when
processing data).

=item B<-q>
      B<--fastq>

Use fastq format as input and output.

=back

=head1 EXAMPLES

Change all bars "|" to hashes ("#") in IDs: 

=over 8

B<fastr> '|' '#' t/data/P450.fas

=back

Change all square brackets to parens in description:

=over 8

B<fastr> -d '[]' '()' t/data/P450.fas

=back

Lower-case all sequence data:

=over 8

B<fastr> -s 'A-Z' 'a-z' t/data/P450.fas

=back

Delete all bars "|" in GenBank IDs: 

=over 8

B<fastr> -D '|' '' t/data/P450.fas

B<fastr> -nD '|' t/data/P450.fas

=back

Delete all non-strict characters from a DNA sequence: 

=over 8

B<fastr> -nscD 'ACGT' t/data/P450.fas

=back

Control and check the function of B<--strict>: 

=over 8

C<fastr --strict t/data/ArdellEtAl03_ncbi_popset_32329588.fas | fascomp -t>
C<cat t/data/ArdellEtAl03_ncbi_popset_32329588.fas | fascomp -t>

=back

=head1 SEE ALSO

=over 8

=item C<man perlre>

=item C<perldoc perlre>

Documentation on perl regular expressions.

=item C<man FAST>

=item C<perldoc FAST>

Introduction and cookbook for FAST

=item L<The FAST Home Page|http://compbio.ucmerced.edu/ardell/FAST>"

=back 

=head1 CITING

If you use FAST, please cite I<Lawrence et al. (2015). FAST: FAST Analysis of
Sequences Toolbox.> and Bioperl I<Stajich et al.>. 

=cut