Bio-MUST-Core

 view release on metacpan or  search on metacpan

bin/export-itol.pl  view on Meta::CPAN

    return;
}

__END__

=pod

=head1 NAME

export-itol.pl - Download formatted trees from iTOL

=head1 VERSION

version 0.252040

=head1 USAGE

    export-itol.pl <infiles> [optional arguments]

=head1 REQUIRED ARGUMENTS

This script is based on C<iTOL_downloader.pl>.

=over

=item <infiles>

Path to input TSV tree id files [repeatable argument].

Such files are generated when uploading trees with the script L<import-itol.pl>.

=for Euclid: infiles.type: readable
    repeatable

=back

=head1 OPTIONS

=over

=item --config=<file>

Path to input INI config file. When not specified, INI config files must have
the same basename as C<infiles> (but see C<--in-strip> below) [default: none].

A config file requires at least the C<format> argument. Supported outfile
formats are: C<svg>, C<pdf>, C<eps>, C<ps>, C<png>, C<newick>, C<nexus> and
C<phyloxml>.

To display all optional parameters and values, see iTOL help page:
L<https://itol.embl.de/help.cgi#bExOpt>

An example of INI config file follows:

    format=svg
    dpi=300
    display_mode=2
    current_font_name=Courier
    datasets_visible=3
    range_mode=2
    include_ranges_legend=1

=for Euclid: file.type: readable

=item --in[-strip]=<str>

Substring(s) to strip from infile basenames before attempting to derive INI
infiles [default: none].

=for Euclid: str.type: string
    repeatable

=item --out[-suffix]=<suffix>

Suffix to append to tree file basenames for deriving outfile names [default:
none].

=for Euclid: suffix.type: string

=item --version

=item --usage

=item --help

=item --man

Print the usual program information

=back

=head1 AUTHOR

Denis BAURAIN <denis.baurain@uliege.be>

=head1 CONTRIBUTOR

=for stopwords Valerian LUPO

Valerian LUPO <valerian.lupo@uliege.be>

=head1 COPYRIGHT AND LICENSE

This software is copyright (c) 2013 by University of Liege / Unit of Eukaryotic Phylogenomics / Denis BAURAIN.

This is free software; you can redistribute it and/or modify it under
the same terms as the Perl 5 programming language system itself.

=cut



( run in 2.077 seconds using v1.01-cache-2.11-cpan-df04353d9ac )