view release on metacpan or  search on metacpan

bin/RNAmotifAnalysis  view on Meta::CPAN

              2. Make it executable

                    chmod u+x cpanm


              3. Make a local lib/perl5 directory (if it doesn't already exist)

                    mkdir -p ~/lib/perl5


              4. Add relevant directories to your PERL5LIB and PATH environment
                 variables by adding the following text to your ~/.bashrc
                 file:


                    # Set PERL5LIB if it doesn't already exist
                    : ${PERL5LIB:=~/lib/perl5}

                    # Prepend to PERL5LIB if directory not already found in PERL5LIB
                    if ! echo $PERL5LIB | egrep -q "(^|:)~/perl5/lib/perl5($|:)"; then
                        export PERL5LIB=~/lib/perl5:$PERL5LIB;
                    fi

                    # Prepend to PATH if directory not already found in PATH
                    if ! echo $PATH | egrep -q "(^|:)~/perl5/bin($|:)"; then
                        export PATH=~/bin:$PATH;
                    fi


              5. Update environment variables immediately

                    source ~/.bashrc


              6. Install Module::Build

                    ./cpanm Module::Build


              7. Install Text::LevenshteinXS (even if you already have it installed elsewhere)

                    ./cpanm Text::LevenshteinXS


              8. Install Bio::App::SELEX::RNAmotifAnalysis

                    ./cpanm Bio::App::SELEX::RNAmotifAnalysis


    Please contact the author if, after consulting this documentation and
    searching Google with error messages, you still encounter difficulties
    during the installation process.

=head1 INCOMPATIBILITIES

    Windows:     lacks necessary *nix utilities
    SGI:         problems with compiled dependency Text::LevenshteinXS
    Sun/Solaris: problems with compiled dependency Text::LevenshteinXS
    BSD:         problems with compiled dependency Text::LevenshteinXS

=head1 BUGS AND LIMITATIONS

     There are no known bugs in this module.
     Please report problems to molecules <at> cpan <dot> org
     Patches are welcome.

=head1 RELATED PUBLICATIONS

    Ditzler MA, Lange MJ, Bose D, Bottoms CA, Virkler KF, et al. (2013) High-
    throughput sequence analysis reveals structural diversity and improved
    potency among RNA inhibitors of HIV reverse transcriptase. Nucleic Acids
    Res 41(3):1873-1884. doi: 10.1093/nar/gks1190

=cut