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# This controls at what point the "pic" script should stop making individually-clickable
# elements.
$MAX_IN_COLUMN = 100;

# location of random pictures to display on certain pages
$RANDOM_PICTS = "$WB/random_pic";
$PIC_SCRIPT   = "$ROOT/misc/random_pic";

#========================= WORMBASE-SPECIFIC CONFIGURATION ==================

# ========== An icon to use for "home" ==========
# leaving this undefined suppresses the generation of a "home" link
# $HOME_ICON = "$ICONS/arrows/uarrw.gif";

# =========  An icon to use for searching =======
# leaving this undefined suppresses the generation of a "search" link
# $SEARCH_ICON = "$ICONS/unknown.gif";

# position of the big banner
$BANNERS   = "$WB/banners";
$BANNERS   = "$WB/banners";
@BANNER_SIZE   = (640,56);

# fixed width for the page
$PAGEWIDTH = 660;

# position of the "cross"
$CROSS_ICON = "$WB/images/cross1.gif";
$ARROWR_ICON = "$WB/images/arrow_right.gif";
$ARROWL_ICON = "$WB/images/arrow_left.gif";

# position of neuron diagrams
$NEURON_DIAGRAMS = "$WB/cell/diagrams";

# ======== BLAST DATABASES ===========
# location of BLAST databases
$BLAST_ROOT = '/usr/local/wublast';;
$BLAST_BIN   = "$BLAST_ROOT/bin/";
$BLAST_MATRIX  = "$BLAST_ROOT/matrix";
$BLAST_FILTER  = "$BLAST_ROOT/filter";
$BLAST_DB      = "/usr/local/acedb/elegans/blast";
$BLAST_CUTOFF  = 0.001;
$BLAST_MAXHITS = 20;
@BLAST_default = ('blastp' => 'WormPep');
%BLAST_labels  = ('EST_Elegans' => 'elegans ESTs',
		  'Elegans'     => 'elegans genomic',
		  'WormPep'     => 'WormPep');
%BLAST_ok      = ('blastn'  => [qw/Elegans EST_Elegans/],
		  'tblastn' => [qw/Elegans EST_Elegans/],
		  'blastp'  => [qw/WormPep/],
		  'blastx'  => [qw/WormPep/]
		 );
# ========= $BANNER =========
# Banner HTML
# This will appear at the top of each page. 
$BANNER = 'WormBase';

# ========= $FOOTER =========
# Footer HTML
# This will appear at the bottom of each page
# $FOOTER = img({-src=>"$WORMBASE/images/foot_logo.gif"});
$MY_FOOTER = a({-href=>'http://stein.cshl.org/'},
	       img({-border=>0,-src=>"$WB/images/foot_logo2.gif"})
	      );

# ========= @SEARCHES  =========
# search scripts available
# NOTE: the order is important
@SEARCHES   = (
	       basic => { name      => 'Simple Search',
			   url      => "$ROOT/searches/basic",
			   onimage  => "$WB/buttons/basic_on.gif",
			   offimage => "$WB/buttons/basic_off.gif",
			   #width, height
			   size     => [109,20], },
		 
	       expr_search => { name    => 'Expr. Pattern Search',
			       url      => "$ROOT/searches/expr_search",
			       onimage  => "$WB/buttons/expr_on.gif",
			       offimage => "$WB/buttons/expr_off.gif",
			       size     => [147,20], },
	       
	       hunter => { name      => 'Gene Hunter',
			    url      => "$ROOT/hunter/hunter.cgi",
			    onimage  => "$WB/buttons/hunter_on.gif",
			    offimage => "$WB/buttons/hunter_off.gif",
			    size     => [100,20], },
	       
#	       browser => { name      => 'Class Browser',
#			    url      => "$ROOT/searches/browser",
#			    onimage  => "$WB/buttons/browser_on.gif",
#			    offimage => "$WB/buttons/browser_off.gif",
#			    size     => [100,20], },

	       blast => { name     => 'Blast Search',
			  url      => "$ROOT/searches/blast",
			  onimage  => "$WB/buttons/blast_on.gif",
			  offimage => "$WB/buttons/blast_off.gif",
			  size     => [99,20], },
	       
	       advanced => { name     => 'Advanced Search',
			     url      => "$ROOT/searches/query",
			     onimage  => "$WB/buttons/advanced_on.gif",
			     offimage => "$WB/buttons/advanced_off.gif",
			     size     => [129,20], },
	       
	       atlas => { name     => 'Worm Atlas',
			  url      => "$WB/atlas/atlas.html",
			  onimage  => "$WB/buttons/atlas_on.gif",
			  offimage => "$WB/buttons/atlas_off.gif",
			  size     => [46,20], },
	      );

# ========= %HOME  =========
# Home page URL
@HOME      = (
	      'http://www.wormbase.org' => 'WormBase home'
	     );

@HOME_BUTTON = ("$WB/buttons/home_bottom.gif" => [20,56]);

# ========= %DISPLAYS =========
%DISPLAYS = (