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Represents a Book in Cellucidate.  This is where Models live.  A book
can be placed on a Bookshelf and has many Models.


Cellucidate::Agent

Represents an agent in Cellucidate.  Agents are used by rules and initial
conditions and solution observables.  Books have zero, one or many agents
and an agent belongs to a book.


Cellucidate::Rule

Represents a rule in Cellucidate. Books have zero, one or many rules
and a rule belongs to a book.  Models have Rules through the ModelRule
resource.


Cellucidate::Model

Represents a biological model in Cellucidate.  The model belongs to a book
and contains a number of Model Rules and Initial Conditions.  A number of
simulations can be run from a Model, each having a number of settings.


Cellucidate::ModelRule

Represents a Rule that is used my a model.  Model rules belong to a model and
models have one or more typically many model rules.  ModelRules have an
association to Rules.


Cellucidate::SolutionObservable

Represents an Agent or set of Agents that you want to observe and plot the 
concentration of when the simulation is run.


Cellucidate::RuleObservable

Represents a ModelRule that you want to observe the activity of when the
simulation is run.


Cellucidate::InitialCondition

This is an initial condition in a model.  Models have one by more typically
many initial conditions and an initial condition belongs to a model.


Cellucidate::SimulationRun

A simulation run represents an execution of the Cellucidate simulator and contains
child result resources.  Simulation runs define various settings.
A Model has one or many simulation runs and a simulation run belongs to
a model.


Cellucidate::OdeResult

Represents the set of ODE formulas generated when running a simulation in ODE-mode.
The results can be used directly in MATLAB.


Cellucidate::Plot

A plot contains a single time series and a number of data series representing the
rule and solution observables.  A simulation run has one or many plots (one for
each iteration).


Cellucidate::Series

A collection of datapoints.  A series belongs to a plot and represents an observable
or time.


Cellucidate::KappaImportJob

This is a resource that represents an import job.  This allows the creation
of a Book, including Model Rules and Initial Conditions, from a Kappa 
string.


Cellucidate::Request

This is the request client, a subclass of L<REST::Client>.  This isn't a 
cellucidate resource.


DEPENDENCIES
------------

This module requires these other modules and libraries:

  REST::Client
  XML::Simple
  Data::Dumper


COPYRIGHT AND LICENCE
---------------------

Copyright (C) 2010 by Plectix BioSystems Inc

This library is free software; you can redistribute it and/or modify
it under the same terms as Perl itself, either Perl version 5.8.9 or,
at your option, any later version of Perl 5 you may have available.