Bio-App-SELEX-RNAmotifAnalysis
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2. Make it executable
chmod u+x cpanm
3. Make a local lib/perl5 directory (if it doesn't already exist)
mkdir -p ~/lib/perl5
4. Add relevant directories to your PERL5LIB and PATH environment
variables by adding the following text to your ~/.bashrc
file:
# Set PERL5LIB if it doesn't already exist
: ${PERL5LIB:=~/lib/perl5}
# Prepend to PERL5LIB if directory not already found in PERL5LIB
if ! echo $PERL5LIB | egrep -q "(^|:)~/perl5/lib/perl5($|:)"; then
export PERL5LIB=~/lib/perl5:$PERL5LIB;
fi
# Prepend to PATH if directory not already found in PATH
if ! echo $PATH | egrep -q "(^|:)~/perl5/bin($|:)"; then
export PATH=~/bin:$PATH;
fi
5. Update environment variables immediately
source ~/.bashrc
6. Install Module::Build
./cpanm Module::Build
7. Install Text::LevenshteinXS (even if you already have it installed elsewhere)
./cpanm Text::LevenshteinXS
8. Install Bio::App::SELEX::RNAmotifAnalysis
./cpanm Bio::App::SELEX::RNAmotifAnalysis
Please contact the author if, after consulting this documentation and
searching Google with error messages, you still encounter difficulties
during the installation process.
INCOMPATIBILITIES
Windows: lacks necessary *nix utilities
SGI: problems with compiled dependency Text::LevenshteinXS
Sun/Solaris: problems with compiled dependency Text::LevenshteinXS
BSD: problems with compiled dependency Text::LevenshteinXS
BUGS AND LIMITATIONS
There are no known bugs in this module.
Please report problems to molecules <at> cpan <dot> org
Patches are welcome.
RELATED PUBLICATIONS
Ditzler MA, Lange MJ, Bose D, Bottoms CA, Virkler KF, et al. (2013) High-
throughput sequence analysis reveals structural diversity and improved
potency among RNA inhibitors of HIV reverse transcriptase. Nucleic Acids
Res 41(3):1873-1884. doi: 10.1093/nar/gks1190
( run in 2.210 seconds using v1.01-cache-2.11-cpan-75ffa21a3d4 )