Bio-App-SELEX-RNAmotifAnalysis

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                  2. Make it executable
    
                        chmod u+x cpanm
    
    
                  3. Make a local lib/perl5 directory (if it doesn't already exist)
    
                        mkdir -p ~/lib/perl5
    
    
                  4. Add relevant directories to your PERL5LIB and PATH environment
                     variables by adding the following text to your ~/.bashrc
                     file:
    
    
                        # Set PERL5LIB if it doesn't already exist
                        : ${PERL5LIB:=~/lib/perl5}
    
                        # Prepend to PERL5LIB if directory not already found in PERL5LIB
                        if ! echo $PERL5LIB | egrep -q "(^|:)~/perl5/lib/perl5($|:)"; then
                            export PERL5LIB=~/lib/perl5:$PERL5LIB;
                        fi
    
                        # Prepend to PATH if directory not already found in PATH
                        if ! echo $PATH | egrep -q "(^|:)~/perl5/bin($|:)"; then
                            export PATH=~/bin:$PATH;
                        fi
    
    
                  5. Update environment variables immediately
    
                        source ~/.bashrc
    
    
                  6. Install Module::Build
    
                        ./cpanm Module::Build
    
    
                  7. Install Text::LevenshteinXS (even if you already have it installed elsewhere)
    
                        ./cpanm Text::LevenshteinXS
    
    
                  8. Install Bio::App::SELEX::RNAmotifAnalysis
    
                        ./cpanm Bio::App::SELEX::RNAmotifAnalysis
    
    
        Please contact the author if, after consulting this documentation and
        searching Google with error messages, you still encounter difficulties
        during the installation process.

INCOMPATIBILITIES

        Windows:     lacks necessary *nix utilities
        SGI:         problems with compiled dependency Text::LevenshteinXS
        Sun/Solaris: problems with compiled dependency Text::LevenshteinXS
        BSD:         problems with compiled dependency Text::LevenshteinXS

BUGS AND LIMITATIONS

         There are no known bugs in this module.
         Please report problems to molecules <at> cpan <dot> org
         Patches are welcome.

RELATED PUBLICATIONS

        Ditzler MA, Lange MJ, Bose D, Bottoms CA, Virkler KF, et al. (2013) High-
        throughput sequence analysis reveals structural diversity and improved
        potency among RNA inhibitors of HIV reverse transcriptase. Nucleic Acids
        Res 41(3):1873-1884. doi: 10.1093/nar/gks1190



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