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doc/Scer-self.md
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doc/fig.multi.vsd
lib/App/Egaz.pm
lib/App/Egaz/Command/blastlink.pm
lib/App/Egaz/Command/blastmatch.pm
lib/App/Egaz/Command/blastn.pm
lib/App/Egaz/Command/exactmatch.pm
lib/App/Egaz/Command/fas2vcf.pm
lib/App/Egaz/Command/formats.pm
lib/App/Egaz/Command/lastz.pm
lib/App/Egaz/Command/lav2axt.pm
lib/App/Egaz/Command/lav2psl.pm
lib/App/Egaz/Command/lpcnam.pm
lib/App/Egaz/Command/maskfasta.pm
lib/App/Egaz/Command/multiz.pm
lib/App/Egaz/Command/normalize.pm
lib/App/Egaz/Command/partition.pm
lib/App/Egaz/Command/prepseq.pm
lib/App/Egaz/Command/raxml.pm
lib/App/Egaz/Command/repeatmasker.pm
lib/App/Egaz/Command/template.pm
lib/App/Egaz/Common.pm
minil.toml
script/egaz
share/1_pair.tt2.sh
share/1_self.tt2.sh
share/2_mash.tt2.sh
share/3_multi.tt2.sh
share/3_proc.tt2.sh
share/4_vcf.tt2.sh
share/9_pack_up.tt2.sh
share/check_dep.sh
share/circos.conf.tt2
share/header.tt2
share/karyotype/karyotype.3702.txt
share/karyotype/karyotype.39947.txt
share/karyotype/karyotype.4530.txt
share/matrix/default
share/matrix/distant
share/matrix/similar
share/matrix/similar2
share/parameters.yml
share/plot_tree.R
t/01-basic.t
t/02-commands.t
t/03-exactmatch.t
t/04-lav2axt.t
t/05-lav2psl.t
t/06-formats.t
t/07-maskfasta.t
t/09-partition.t
t/10-normalize.t
t/11-raxml.t
t/13-blastn.t
t/14-lastz.t
t/15-prepseq.t
t/16-lpcnam.t
t/17-multiz.t
t/18-repeatmasker.t
t/19-blastmatch.t
t/20-blastlink.t