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BUGS
Build.PL
Changes
deobfuscator/Deobfuscator/bin/deob_index.pl
deobfuscator/Deobfuscator/bin/run-deobfuscator-update.pl
deobfuscator/Deobfuscator/Build.PL
deobfuscator/Deobfuscator/cgi-bin/deob_detail.cgi
deobfuscator/Deobfuscator/cgi-bin/deob_flowchart.png
deobfuscator/Deobfuscator/cgi-bin/deob_help.html
deobfuscator/Deobfuscator/cgi-bin/deob_interface.cgi
deobfuscator/Deobfuscator/Changes
deobfuscator/Deobfuscator/excluded_modules.txt
deobfuscator/Deobfuscator/lib/Deobfuscator.pm
deobfuscator/Deobfuscator/LICENSE
deobfuscator/Deobfuscator/Makefile.PL
deobfuscator/Deobfuscator/MANIFEST
deobfuscator/Deobfuscator/META.yml
deobfuscator/Deobfuscator/README
deobfuscator/Deobfuscator/t/00.load.t
deobfuscator/Deobfuscator/t/pod.t
deobfuscator/makedoc.PL
DEPENDENCIES
DEPRECATED
examples/align/align_on_codons.pl
examples/align/aligntutorial.pl
examples/align/clustalw.pl
examples/align/FastAlign.pl
examples/align/simplealign.pl
examples/Bio-DB-GFF/load_ucsc.pl
examples/bioperl.pl
examples/cluster/dbsnp.pl
examples/contributed/nmrpdb_parse.pl
examples/contributed/prosite2perl.pl
examples/contributed/rebase2list.pl
examples/db/dbfetch
examples/db/est_tissue_query.pl
examples/db/gb2features.pl
examples/db/get_seqs.pl
examples/db/getGenBank.pl
examples/db/rfetch.pl
examples/db/use_registry.pl
examples/generate_random_seq.pl
examples/liveseq/change_gene.pl
examples/longorf.pl
examples/make_primers.pl
examples/popgen/parse_calc_stats.pl
examples/quality/svgtrace.pl
examples/rev_and_trans.pl
examples/revcom_dir.pl
examples/root/exceptions1.pl
examples/root/exceptions2.pl
examples/root/exceptions3.pl
examples/root/exceptions4.pl
examples/root/README
examples/searchio/blast_example.pl
examples/searchio/custom_writer.pl
examples/searchio/hitwriter.pl
examples/searchio/hspwriter.pl
examples/searchio/htmlwriter.pl
examples/searchio/psiblast_features.pl
examples/searchio/psiblast_iterations.pl
examples/searchio/rawwriter.pl
examples/searchio/resultwriter.pl
examples/searchio/waba2gff.pl
examples/searchio/waba2gff3.pl
examples/sirna/rnai_finder.cgi
examples/sirna/TAG
examples/structure/structure-io.pl
examples/subsequence.cgi
examples/tk/gsequence.pl
examples/tk/hitdisplay.pl
examples/tools/extract_genes.pl
examples/tools/gb_to_gff.pl
examples/tools/gff2ps.pl
examples/tools/parse_codeml.pl
examples/tools/psw.pl
examples/tools/reverse-translate.pl
examples/tools/run_genscan.pl
examples/tools/run_primer3.pl
examples/tools/seq_pattern.pl
examples/tools/standaloneblast.pl
examples/tree/paup2phylip.pl
ide/bioperl-mode/dist/bioperl-mode-xemacs.tar
ide/bioperl-mode/dist/bioperl-mode-xemacs.tar.md5
ide/bioperl-mode/dist/bioperl-mode.tar
ide/bioperl-mode/dist/bioperl-mode.tar.md5
ide/bioperl-mode/dist/Changes
ide/bioperl-mode/dist/package-me
ide/bioperl-mode/dist/SKIP
ide/bioperl-mode/etc/images/bpmode-tool-dis.xpm
ide/bioperl-mode/etc/images/bpmode-tool.xpm
ide/bioperl-mode/README
ide/bioperl-mode/site-lisp/bioperl-init.el
ide/bioperl-mode/site-lisp/bioperl-mode.el
ide/bioperl-mode/site-lisp/bioperl-skel.el
ide/bioperl-mode/site-lisp/pod.el
ide/bioperl.komodo
INSTALL-WIN.md
INSTALL.md
INSTALL.SKIP
LICENSE
maintenance/authors.pl
maintenance/big_split/file_classification.csv
maintenance/big_split/rbuels_notes.txt
maintenance/check_NAME.pl
maintenance/check_URLs.pl
maintenance/cvs2cl_by_file.pl
maintenance/dependencies.pl
maintenance/deprecated.pl
maintenance/find_mod_deps.pl
maintenance/module_usage.pl
maintenance/modules.pl
maintenance/ncbi_blast_switches.pl
maintenance/perltidy.conf
maintenance/pod.pl
maintenance/README
maintenance/symlink_script.pl
maintenance/version.pl
MANIFEST			This list of files
models/biblio.dia
models/bio_liveseq_variation.dia