Bio-DB-Big
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#!/usr/bin/env perl
# Copyright [2015-2017] EMBL-European Bioinformatics Institute
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
use strict;
use warnings;
use Module::Build;
my $class = Module::Build->subclass( class => 'Module::Build::Big' );
my $build = $class->new(
module_name => 'Bio::DB::Big',
dist_version_from => 'lib/Bio/DB/Big.pm',
dist_author => 'Andy Yates',
dist_abstract =>
'Perl interface to bigWigLib for accessing the kent big formats',
license => 'open_source',
extra_compiler_flags => [
'-D_IOLIB=2', '-D_FILE_OFFSET_BITS=64',
# warnings not treated as errors
'-Wno-error',
# Don't care about unused results from function calls
'-Wno-unused-result',
],
build_requires => { 'ExtUtils::CBuilder' => 0, },
configure_requires => { 'Module::Build' => 0.42, 'Module::Build::Pluggable' => 0, 'Module::Build::Pluggable::CPANfile' => 0, },
test_requires => { 'Test::Fake::HTTPD', => 0, 'Test::Differences' => 0, 'Test::Exception' => 0, 'Test::Output' => 0, },
requires => { 'perl' => '5.008' },
meta_merge => {
'resources' => {
'repository' => 'https://github.com/Ensembl/Bio-DB-Big',
},
},
);
$build->find_libbigwig;
$build->set_include_and_compiler_flags;
$build->create_build_script;
exit 0;
package Module::Build::Big;
use Module::Load::Conditional qw(can_load);
use base 'Module::Build';
sub find_libbigwig {
my ($self) = @_;
# If either of these are set, we expect to find the libBigWig files there:
# (They're explicitly set by the user, so we shouldn't fall back to
# finding another copy somewhere else.)
if ( my $dir = $self->args('libbigwig') ) {
return 1 if $self->find_libbigwig_in_build_dir($dir);
return 1 if $self->find_libbigwig_in_install_dir($dir);
$self->die_libbigwig_not_found(
"--libbigwig '$dir' command line parameter does not contain expected files\n"
);
}
elsif ( $dir = $ENV{'LIBBIGWIG_DIR'} ) {
return 1 if $self->find_libbigwig_in_build_dir($dir);
return 1 if $self->find_libbigwig_in_install_dir($dir);
$self->die_libbigwig_not_found(
"LIGBIGWIG_DIR=$ENV{LIBBIGWIG_DIR} environment variable does not contain expected files\n"
);
}
# Search through remaining possible (but not fatal) locations:
my $found = 0;
foreach my $dir (
$self->prefix, from_Alien(),
scalar `pkg-config --variable=libdir libBigWig 2>/dev/null`,
qw{ /usr /usr/local /usr/share /opt/local },
)
{
if ( $dir and $self->find_libbigwig_in_install_dir($dir) ) {
$found = 1;
last;
}
}
return 1 if $found;
$self->die_libbigwig_not_found();
}
sub set_include_and_compiler_flags {
my ($self) = @_;
( run in 1.579 second using v1.01-cache-2.11-cpan-39bf76dae61 )