AcePerl
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Ace/Local.pm view on Meta::CPAN
use vars '$VERSION';
$VERSION = '1.05';
use Ace qw/rearrange STATUS_WAITING STATUS_PENDING STATUS_ERROR/;
use constant DEFAULT_HOST=>'localhost';
use constant DEFAULT_PORT=>200005;
use constant DEFAULT_DB=>'/usr/local/acedb';
# Changed readsize to be 4k rather than 5k. Most flavours of UNIX
# have a page size of 4kb or a multiple thereof. It improves
# efficiency to read an integer number of pages
# -- tim.cutts@incyte.com 08 Sep 1999
use constant READSIZE => 1024 * 4; # read 4k units
# this seems gratuitous, but don't delete it just yet
# $SIG{'CHLD'} = sub { wait(); } ;
sub connect {
my $class = shift;
my ($path,$program,$host,$port,$nosync) = rearrange(['PATH','PROGRAM','HOST','PORT','NOSYNC'],@_);
my $args;
# some pretty insane heuristics to handle BOTH tace and aceclient
die "Specify either -path or -host and -port" if ($program && ($host || $port));
die "-path is not relevant for aceclient, use -host and/or -port"
if defined($program) && $program=~/aceclient/ && defined($path);
die "-host and -port are not relevant for tace, use -path"
if defined($program) && $program=~/tace/ and (defined $port || defined $host);
# note, this relies on the programs being included in the current PATH
my $prompt = 'acedb> ';
if ($host || $port) {
$program ||= 'aceclient';
$prompt = "acedb\@$host> ";
} else {
$program ||= 'giface';
}
if ($program =~ /aceclient/) {
$host ||= DEFAULT_HOST;
$port ||= DEFAULT_PORT;
$args = "$host -port $port";
} else {
$path ||= DEFAULT_DB;
$path = _expand_twiddles($path);
$args = $path;
}
my($rdr,$wtr) = (gensym,gensym);
my($pid) = open2($rdr,$wtr,"$program $args");
unless ($pid) {
$Ace::Error = <$rdr>;
return undef;
}
# Figure out the prompt by reading until we get zero length,
# then take whatever's at the end.
unless ($nosync) {
local($/) = "> ";
my $data = <$rdr>;
($prompt) = $data=~/^(.+> )/m;
unless ($prompt) {
$Ace::Error = "$program didn't open correctly";
return undef;
}
}
return bless {
'read' => $rdr,
'write' => $wtr,
'prompt' => $prompt,
'pid' => $pid,
'auto_save' => 1,
'status' => $nosync ? STATUS_PENDING : STATUS_WAITING, # initial stuff to read
},$class;
}
sub debug {
my $self = shift;
my $d = $self->{debug};
$self->{debug} = shift if @_;
$d;
}
sub DESTROY {
my $self = shift;
return unless kill 0,$self->{'pid'};
if ($self->auto_save) {
# save work for the user...
$self->query('save');
$self->synch;
}
$self->query('quit');
# just for paranoid reasons. shouldn't be necessary
close $self->{'write'} if $self->{'write'};
close $self->{'read'} if $self->{'read'};
waitpid($self->{pid},0) if $self->{'pid'};
}
sub encore {
my $self = shift;
return $self->status == STATUS_PENDING;
}
sub auto_save {
my $self = shift;
$self->{'auto_save'} = $_[0] if defined $_[0];
return $self->{'auto_save'};
}
sub status {
return $_[0]->{'status'};
}
sub error {
my $self = shift;
return $self->{'error'};
}
sub query {
my $self = shift;
my $query = shift;
warn "query($query)\n" if $self->debug;
if ($self->debug) {
my $msg = $query || '';
warn "\tquery($msg)";
}
return undef if $self->{'status'} == STATUS_ERROR;
do $self->read() until $self->{'status'} != STATUS_PENDING;
my $wtr = $self->{'write'};
print $wtr "$query\n";
$self->{'status'} = STATUS_PENDING;
}
sub low_read { # hack to accomodate "uninitialized database" warning from tace
my $self = shift;
my $rdr = $self->{'read'};
return undef unless $self->{'status'} == STATUS_PENDING;
my $rin = '';
my $data = '';
vec($rin,fileno($rdr),1)=1;
unless (select($rin,undef,undef,1)) {
$self->{'status'} = STATUS_WAITING;
return undef;
}
sysread($rdr,$data,READSIZE);
return $data;
}
sub read {
my $self = shift;
return undef unless $self->{'status'} == STATUS_PENDING;
my $rdr = $self->{'read'};
my $len = defined $self->{'buffer'} ? length($self->{'buffer'}) : 0;
my $plen = length($self->{'prompt'});
my ($result, $bytes, $pos, $searchfrom);
while (1) {
# Read the data directly onto the end of the buffer
$bytes = sysread($rdr, $self->{'buffer'},
READSIZE, $len);
unless ($bytes > 0) {
$self->{'status'} = STATUS_ERROR;
return;
}
# check for prompt
# The following checks were implemented using regexps and $' and
# friends. I have changed this to use {r}index and substr (a)
# because they're much faster than regexps and (b) because using
# $' and $` causes all regexps in a program to execute
# very slowly due to excessive and unnecessary pre/post-match
# copying -- tim.cutts@incyte.com 08 Sep 1999
# Note, don't need to search the whole buffer for the prompt;
# just need to search the new data and the prompt length from
# any previous data.
$searchfrom = ($len <= $plen) ? 0 : ($len - $plen);
if (($pos = index($self->{'buffer'},
$self->{'prompt'},
$searchfrom)) > 0) {
$self->{'status'} = STATUS_WAITING;
$result = substr($self->{'buffer'}, 0, $pos);
$self->{'buffer'} = '';
return $result;
}
# return partial results for paragraph breaks
if (($pos = rindex($self->{'buffer'}, "\n\n")) > 0) {
$result = substr($self->{'buffer'}, 0, $pos + 2);
$self->{'buffer'} = substr($self->{'buffer'},
$pos + 2);
return $result;
}
$len += $bytes;
}
# never get here
}
# just throw away everything
sub synch {
my $self = shift;
$self->read() while $self->status == STATUS_PENDING;
}
# expand ~foo syntax
sub _expand_twiddles {
my $path = shift;
my ($to_expand,$homedir);
return $path unless $path =~ m!^~([^/]*)!;
if ($to_expand = $1) {
$homedir = (getpwnam($to_expand))[7];
} else {
$homedir = (getpwuid($<))[7];
}
return $path unless $homedir;
$path =~ s!^~[^/]*!$homedir!;
return $path;
}
__END__
=head1 NAME
Ace::Local - use giface, tace or gifaceclient to open a local connection to an Ace database
=head1 SYNOPSIS
use Ace::Local
my $ace = Ace::Local->connect(-path=>'/usr/local/acedb/elegans');
$ace->query('find author Se*');
die "Query unsuccessful" unless $ace->status;
$ace->query('show');
while ($ace->encore) {
print $ace->read;
}
=head1 DESCRIPTION
This class is provided for low-level access to local (non-networked)
Ace databases via the I<giface> program. You will generally not need
to access it directly. Use Ace.pm instead.
For the sake of completeness, the method can also use the I<aceclient>
program for its access. However the Ace::AceDB class is more efficient
for this purpose.
=head1 METHODS
=head2 connect()
$accessor = Ace::Local->connect(-path=>$path_to_database);
Connect to the database at the indicated path using I<giface> and
return a connection object (an "accessor"). I<Giface> must be on the
current search path. Multiple accessors may be open simultaneously.
Arguments include:
=over 4
=item B<-path>
Path to the database (location of the "wspec/" directory).
=item B<-program>
Used to indicate the location of the desired I<giface> or
I<gifaceclient> executable. You may also use I<tace> or I<aceclient>,
but in that case the asGIF() functionality will nog work. Can be used
to override the search path.
=item B<-host>
Used when invoking I<gifaceclient>. Indicates the host to connect to.
=item B<-port>
Used when invoking I<gifaceclient>. Indicates the port to connect to.
=item B<-nosync>
Ordinarily Ace::Local synchronizes with the tace/giface prompt,
throwing out all warnings and copyright messages. If this is set,
Ace::Local will not do so. In this case you must call the low_read()
method until it returns undef in order to synchronize.
=back
=head2 query()
$status = $accessor->query('query string');
Send the query string to the server and return a true value if
successful. You must then call read() repeatedly in order to fetch
the query result.
=head2 read()
Read the result from the last query sent to the server and return it
as a string. ACE may return the result in pieces, breaking between
whole objects. You may need to read repeatedly in order to fetch the
entire result. Canonical example:
$accessor->query("find Sequence D*");
die "Got an error ",$accessor->error() if $accessor->status == STATUS_ERROR;
while ($accessor->status == STATUS_PENDING) {
$result .= $accessor->read;
}
=head2 low_read()
Read whatever data's available, or undef if none. This is only used
by the ace.pl replacement for giface/tace.
=head2 status()
Return the status code from the last operation. Status codes are
exported by default when you B<use> Ace.pm. The status codes you may
see are:
STATUS_WAITING The server is waiting for a query.
STATUS_PENDING A query has been sent and Ace is waiting for
you to read() the result.
STATUS_ERROR A communications or syntax error has occurred
=head2 error()
May return a more detailed error code supplied by Ace. Error checking
is not fully implemented.
=head2 encore()
This method will return true after you have performed one or more
read() operations, and indicates that there is more data to read.
B<encore()> is functionally equivalent to:
$encore = $accessor->status == STATUS_PENDING;
In fact, this is how it's implemented.
=head2 auto_save()
Sets or queries the I<auto_save> variable. If true, the "save"
command will be issued automatically before the connection to the
database is severed. The default is true.
Examples:
$accessor->auto_save(1);
$flag = $accessor->auto_save;
=head1 SEE ALSO
L<Ace>, L<Ace::Object>, L<Ace::Iterator>, L<Ace::Model>
=head1 AUTHOR
Lincoln Stein <lstein@w3.org> with extensive help from Jean
Thierry-Mieg <mieg@kaa.crbm.cnrs-mop.fr>
Copyright (c) 1997-1998, Lincoln D. Stein
This library is free software; you can redistribute it and/or modify
it under the same terms as Perl itself. See DISCLAIMER.txt for
disclaimers of warranty.
=cut
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