Bio-SamTools
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correct now.
* Fixed bug in get_all_tags() which was choking on "Z" style tags and giving
scrambled results.
* $feature->query now reports the DNA query in canonical (ref)
coordinates; only $feature->target reverse complements the query
DNA to give the data actually read; cigar string is always in
canonical coordinates
Version 1.09
* Disabled checks for file readability when path is a remote BAM
index. This allows transparent access to BAM databases on
http/ftp servers.
Version 1.08
* Implemented a clone() method for use immediately before or after
a fork() attempt.
Version 1.07
* IMPORTANT API CHANGE 1: The feature strand now returns +1 or -1 to indicate
whether the query was reverse complemented in the SAM file.
* IMPORTANT API CHANGE 2: The $feature->query object's dna() and seq() methods
( run in 0.357 second using v1.01-cache-2.11-cpan-a1d94b6210f )