Bio-MAGETAB

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lib/Bio/MAGETAB/Util/Reader/ADF.pm  view on Meta::CPAN

 use Bio::MAGETAB::Util::Reader::ADF;
 my $parser = Bio::MAGETAB::Util::Reader::ADF->new({
     uri => $adf_filename,
 });
 my $array_design = $parser->parse();

=head1 DESCRIPTION

This class is used to parse ADF files. It can be used on its own, but
more often you will want to use the main Bio::MAGETAB::Util::Reader
class which handles extended parsing options more transparently.

=head1 ATTRIBUTES

See the L<TagValueFile|Bio::MAGETAB::Util::Reader::TagValueFile> class for superclass attributes.

=over 2

=item magetab_object

A Bio::MAGETAB::ArrayDesign object. This can either be set upon

lib/Bio/MAGETAB/Util/Reader/DataMatrix.pm  view on Meta::CPAN

 use Bio::MAGETAB::Util::Reader::DataMatrix;
 my $parser = Bio::MAGETAB::Util::Reader::DataMatrix->new({
     uri => $dm_filename,
 });
 my $data_matrix = $parser->parse();

=head1 DESCRIPTION

This class is used to parse data matrix files. It can be used on its own, but
more often you will want to use the main Bio::MAGETAB::Util::Reader
class which handles extended parsing options more transparently.

=head1 ATTRIBUTES

See the L<TabFile|Bio::MAGETAB::Util::Reader::TabFile> class for superclass attributes.

=over 2

=item magetab_object

A Bio::MAGETAB::DataMatrix object. This can either be set upon

lib/Bio/MAGETAB/Util/Reader/IDF.pm  view on Meta::CPAN

 use Bio::MAGETAB::Util::Reader::IDF;
 my $parser = Bio::MAGETAB::Util::Reader::IDF->new({
     uri => $idf_filename,
 });
 my $investigation = $parser->parse();

=head1 DESCRIPTION

This class is used to parse IDF files. It can be used on its own, but
more often you will want to use the main Bio::MAGETAB::Util::Reader
class which handles extended parsing options more transparently.

=head1 ATTRIBUTES

See the L<TagValueFile|Bio::MAGETAB::Util::Reader::TagValueFile> class for superclass attributes.

=over 2

=item magetab_object

A Bio::MAGETAB::Investigation object. This can either be set upon

lib/Bio/MAGETAB/Util/Reader/SDRF.pm  view on Meta::CPAN

 use Bio::MAGETAB::Util::Reader::SDRF;
 my $parser = Bio::MAGETAB::Util::Reader::SDRF->new({
     uri => $sdrf_filename,
 });
 my $sdrf = $parser->parse();

=head1 DESCRIPTION

This class is used to parse SDRF files. It can be used on its own, but
more often you will want to use the main Bio::MAGETAB::Util::Reader
class which handles extended parsing options more transparently.

=head1 ATTRIBUTES

See the L<TabFile|Bio::MAGETAB::Util::Reader::TabFile> class for superclass attributes.

=over 2

=item magetab_object

A Bio::MAGETAB::SDRF object. This can either be set upon