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README  view on Meta::CPAN

    BioX::Workflow::Plugin::Drake - A very opinionated template based
    bioinformatics workflow writer for Drake.

SYNOPSIS

    The main documentation for this module is at BioX::Workflow. This
    module extends Workflow in order to add functionality for outputing
    workflows in drake format.

        biox-workflow.pl --workflow workflow.yml > workflow.drake
        drake --workflow workflow.drake  #with other functionality such as --jobs for asynchronous output, etc.
    
        List your plugins in your workflow.yml file
    
        ---
        plugins:
            - Drake
        global:
            - indir: /home/user/gemini
            - outdir: /home/user/gemini/gemini-wrapper
            - file_rule: (.vcf)$|(.vcf.gz)$

lib/BioX/Workflow/Plugin/Drake.pm  view on Meta::CPAN

=head1 NAME

BioX::Workflow::Plugin::Drake - A very opinionated template based bioinformatics workflow writer for Drake.

=head1 SYNOPSIS

The main documentation for this module is at L<BioX::Workflow>. This module extends Workflow in order to add functionality for outputing workflows in drake format.

    biox-workflow.pl --workflow workflow.yml > workflow.drake
    drake --workflow workflow.drake  #with other functionality such as --jobs for asynchronous output, etc.

    List your plugins in your workflow.yml file

    ---
    plugins:
        - Drake
    global:
        - indir: /home/user/gemini
        - outdir: /home/user/gemini/gemini-wrapper
        - file_rule: (.vcf)$|(.vcf.gz)$