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README  view on Meta::CPAN

    Please obtain the APIs and set up the environment by following the steps 
    described on the Ensembl Vertebrates API installation pages:

    http://www.ensembl.org/info/docs/api/api_installation.html

    or alternatively

    http://www.ensembl.org/info/docs/api/api_cvs.html

    NOTE 1 - The Ensembl Vertebrate and Ensembl Genomes DB releases are usually
             not synchronised: an Ensembl Genomes DB release usually follows the 
             corresponding Ensembl Vertebrates release by a number	of weeks. This means 
             that if you install a bleeding-edge Ensembl Vertebrate API, while the 
             corresponding Ensembl Vertebrate DB will exist, a matching EnsemblGenomes DB 
             release might not be available yet: you will still be able to use 
             Bio::Homology::InterologWalk to run an orthology walk using exclusively Ensembl 
             Vertebrate DBs, but you will get an error if you try to choose an Ensembl Genomes
             databases. In such cases, please install the most recent API compatible with
             Ensembl Genomes Metazoa, from

             http://metazoa.ensembl.org/info/docs/api/api_installation.html

lib/Bio/Homology/InterologWalk.pm  view on Meta::CPAN

=back 

Please obtain the APIs and set up the environment by following the steps described on the Ensembl Vertebrates API installation pages:

http://www.ensembl.org/info/docs/api/api_installation.html

or alternatively

http://www.ensembl.org/info/docs/api/api_cvs.html

B<NOTE 1 - > The Ensembl Vertebrate and Ensembl Genomes DB releases are usually not synchronised: an Ensembl Genomes DB release usually follows the corresponding Ensembl Vertebrates
release by a number of weeks. This means that if you install a bleeding-edge Ensembl Vertebrate API, while the corresponding Ensembl Vertebrate DB will exist, I<a matching EnsemblGenomes DB release might
not be available yet>: you will still be able to use C<Bio::Homology::InterologWalk> to run an orthology walk using exclusively Ensembl Vertebrate DBs, but you
will get an error if you try to choose an Ensembl Genomes databases. In such cases, please install the most recent API compatible with Ensembl Genomes Metazoa, from

http://metazoa.ensembl.org/info/docs/api/api_installation.html

or alternatively

http://metazoa.ensembl.org/info/docs/api/api_cvs.html

scripts/Data/psi-mi.obo  view on Meta::CPAN

subset: Drugable
subset: PSI-MI slim
synonym: "ChEBI" EXACT PSI-MI-alternate []
xref: id-validation-regexp:\"CHEBI\:[0-9\]+\"
xref: search-url: "http://www.ebi.ac.uk/chebi/searchId.do?chebiId=${ac}"
is_a: MI:2054 ! bioactive entity reference

[Term]
id: MI:0475
name: ddbj/embl/genbank
def: "DDBJ EMBL GenBank Nucleotide Sequence Database Collaboration exchange new and updated data on a daily basis to achieve optimal synchronisation.\nhttp://www.ebi.ac.uk/embl/Contact/collaboration" [PMID:14755292]
subset: PSI-MI slim
synonym: "DDBJ" EXACT PSI-MI-alternate []
synonym: "DDBJ/EMBL/GenBank" EXACT PSI-MI-alternate []
synonym: "EMBL" EXACT PSI-MI-alternate []
synonym: "GenBank" EXACT PSI-MI-alternate []
xref: id-validation-regexp:\"[A-Z\][0-9\]\{5}|[A-Z\][0-9\]\{5}\\.[0-9\]+|[A-Z\]\{2}[0-9\]\{6}|[A-Z\]\{2}[0-9\]\{6}\\.[0-9\]+|[A-Z\]\{4}[0-9\]\{8}|[A-Z\]\{4}[0-9\]\{8}\\.[0-9\]+\"
xref: search-url: "http://www.ebi.ac.uk/cgi-bin/dbfetch?db=EMBLSVA&id=${ac}"
is_a: MI:0683 ! sequence database

[Term]