BioX-Seq

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Changes  view on Meta::CPAN

         Fix fatal error in Bio::Seq::Fetch where description is requested and
         contains the greater-than sign

0.008005 2022-04-30
         Add support for writing as input format

0.008004 2022-01-21
         Add check for out-of-date faidx files

0.008003 2021-11-04
         Added support for streaming xz-compressed files

0.008002 2021-04-08
         Use core module IPC::Cmd instead of File::Which to look for installed
            programs (removes last non-core dependency)

0.008001 2020-12-19
         Bump minimum Perl version to 5.16 (older versions handle l-value
            subroutines differently)

0.008 2019-07-17

Changes  view on Meta::CPAN

         Fix missing build dependency for Test::Exception

0.007002 2019-01-10
         Write FASTA index files in raw mode for consistency on all platforms
         Expanded test coverage

0.007001 2019-01-10
         Skip advanced compression tests if binaries are missing

0.007 2018-12-28
         Added support for streaming zstd-compressed files

0.006007 2018-06-19
         Removed CPAN::Uploader as hard dependency

0.006006 2018-05-18
         Misc documentation fixes

0.006005 2018-01-12
         Fixed bug in ORF regex from Util module

README.md  view on Meta::CPAN

BioX::Seq is a simple sequence class that can be used to represent
biological sequences. It was designed as a compromise between using simple
strings and hashes to hold sequences and using the rather bloated objects of
Bioperl. Features (or, depending on your viewpoint, bugs) include
auto-stringification and context-dependent transformations. It is meant
be used primarily as the return object of the BioX::Seq::Stream and
BioX::Seq::Fetch parsers, but
there may be occasions where it is useful in its own right.

BioX::Seq::Stream and BioX::Seq::Fetch can be used to read in sequence objects
in a streaming or random-access fashion from FASTA and FASTQ files.

INSTALLATION
------------

To install this module, run the following commands:
    
    git clone https://github.com/jvolkening/p5-BioX-Seq.git
    cd p5-BioX-Seq
	perl Build.PL
	./Build



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