BioX-Seq
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Fix fatal error in Bio::Seq::Fetch where description is requested and
contains the greater-than sign
0.008005 2022-04-30
Add support for writing as input format
0.008004 2022-01-21
Add check for out-of-date faidx files
0.008003 2021-11-04
Added support for streaming xz-compressed files
0.008002 2021-04-08
Use core module IPC::Cmd instead of File::Which to look for installed
programs (removes last non-core dependency)
0.008001 2020-12-19
Bump minimum Perl version to 5.16 (older versions handle l-value
subroutines differently)
0.008 2019-07-17
Fix missing build dependency for Test::Exception
0.007002 2019-01-10
Write FASTA index files in raw mode for consistency on all platforms
Expanded test coverage
0.007001 2019-01-10
Skip advanced compression tests if binaries are missing
0.007 2018-12-28
Added support for streaming zstd-compressed files
0.006007 2018-06-19
Removed CPAN::Uploader as hard dependency
0.006006 2018-05-18
Misc documentation fixes
0.006005 2018-01-12
Fixed bug in ORF regex from Util module
BioX::Seq is a simple sequence class that can be used to represent
biological sequences. It was designed as a compromise between using simple
strings and hashes to hold sequences and using the rather bloated objects of
Bioperl. Features (or, depending on your viewpoint, bugs) include
auto-stringification and context-dependent transformations. It is meant
be used primarily as the return object of the BioX::Seq::Stream and
BioX::Seq::Fetch parsers, but
there may be occasions where it is useful in its own right.
BioX::Seq::Stream and BioX::Seq::Fetch can be used to read in sequence objects
in a streaming or random-access fashion from FASTA and FASTQ files.
INSTALLATION
------------
To install this module, run the following commands:
git clone https://github.com/jvolkening/p5-BioX-Seq.git
cd p5-BioX-Seq
perl Build.PL
./Build
( run in 0.254 second using v1.01-cache-2.11-cpan-4d50c553e7e )