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    proc ModulesHelp { } {

            puts stderr "\tAdds the snpeff binaries to your path.\n module load snpeff \n java -jar $SNPEFF/snpEff.jar -c /path/to/configuration/file/snpEff.config <args>"
    }

    module-whatis   "Adds the snpeff binaries to your path."

    module add java/jdk1.7.0_67

    set ROOT_DIR    /system/apps/software
    setenv  SNPEFF  $ROOT_DIR/snpEff

    #For analysis and denormalizing
    module add samtools/1.2
    prepend-path    PATH    $ROOT_DIR/vt

=head2 Upcoming Functionality

Add in a VEP workflow option

=head1 AUTHOR