Alien-SeqAlignment-hmmer3

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README  view on Meta::CPAN

      system Alien::SeqAlignment::hmmer3->esl_alipid     (parameters & options);
      system Alien::SeqAlignment::hmmer3->esl_alirev     (parameters & options);
      system Alien::SeqAlignment::hmmer3->esl_alistat    (parameters & options);
      system Alien::SeqAlignment::hmmer3->esl_compalign  (parameters & options);
      system Alien::SeqAlignment::hmmer3->esl_compstruct (parameters & options);
      system Alien::SeqAlignment::hmmer3->esl_construct  (parameters & options);
      system Alien::SeqAlignment::hmmer3->esl_histplot   (parameters & options);
      system Alien::SeqAlignment::hmmer3->esl_mask       (parameters & options);
      system Alien::SeqAlignment::hmmer3->esl_mixdchlet  (parameters & options);
      system Alien::SeqAlignment::hmmer3->esl_reformat   (parameters & options);
      system Alien::SeqAlignment::hmmer3->esl_selectn    (parameters & options);
      system Alien::SeqAlignment::hmmer3->esl_seqrange   (parameters & options);
      system Alien::SeqAlignment::hmmer3->esl_seqstat    (parameters & options);
      system Alien::SeqAlignment::hmmer3->esl_sfetch     (parameters & options);
      system Alien::SeqAlignment::hmmer3->esl_shuffle    (parameters & options);
      system Alien::SeqAlignment::hmmer3->esl_ssdraw     (parameters & options);
      system Alien::SeqAlignment::hmmer3->esl_translate  (parameters & options);
      system Alien::SeqAlignment::hmmer3->esl_weight     (parameters & options);

DESCRIPTION
    This distribution provides HMMER3 so that it can be used by other Perl

README  view on Meta::CPAN

    esl_mask - mask sequence residues with Xs (or other characters)

  esl_mixdchlet
      Alien::SeqAlignment::hmmer3->esl_mixdchlet (parameters & options);
    esl_mixdchlet - fitting mixture Dirichlets to count data

  esl_reformat
      Alien::SeqAlignment::hmmer3->esl_reformat (parameters & options);
    esl_reformat - convert sequence file formats

  esl_selectn
      Alien::SeqAlignment::hmmer3->esl_selectn (parameters & options);
    esl_selectn - select random subset of lines from file

  esl_seqrange
      Alien::SeqAlignment::hmmer3->esl_seqrange (parameters & options);
    esl_seqrange - determine a range of sequences for one of many parallel

  esl_seqstat
        Alien::SeqAlignment::hmmer3->esl_seqstat (parameters & options);
    esl_seqstat - summarize contents of a sequence file

  esl_sfetch

alienfile  view on Meta::CPAN

    esl_alipid     => 'esl-alipid',
    esl_alirev     => 'esl-alirev',
    esl_alistat    => 'esl-alistat',
    esl_compalign  => 'esl-compalign',
    esl_compstruct => 'esl-compstruct',
    esl_construct  => 'esl-construct',
    esl_histplot   => 'esl-histplot',
    esl_mask       => 'esl-mask',
    esl_mixdchlet  => 'esl-mixdchlet',
    esl_reformat   => 'esl-reformat',
    esl_selectn    => 'esl-selectn',
    esl_seqrange   => 'esl-seqrange',
    esl_seqstat    => 'esl-seqstat',
    esl_sfetch     => 'esl-sfetch',
    esl_shuffle    => 'esl-shuffle',
    esl_ssdraw     => 'esl-ssdraw',
    esl_translate  => 'esl-translate',
    esl_weight     => 'esl-weight',
);

probe sub {

lib/Alien/SeqAlignment/hmmer3.pm  view on Meta::CPAN

  system Alien::SeqAlignment::hmmer3->esl_alipid     (parameters & options);
  system Alien::SeqAlignment::hmmer3->esl_alirev     (parameters & options);
  system Alien::SeqAlignment::hmmer3->esl_alistat    (parameters & options);
  system Alien::SeqAlignment::hmmer3->esl_compalign  (parameters & options);
  system Alien::SeqAlignment::hmmer3->esl_compstruct (parameters & options);
  system Alien::SeqAlignment::hmmer3->esl_construct  (parameters & options);
  system Alien::SeqAlignment::hmmer3->esl_histplot   (parameters & options);
  system Alien::SeqAlignment::hmmer3->esl_mask       (parameters & options);
  system Alien::SeqAlignment::hmmer3->esl_mixdchlet  (parameters & options);
  system Alien::SeqAlignment::hmmer3->esl_reformat   (parameters & options);
  system Alien::SeqAlignment::hmmer3->esl_selectn    (parameters & options);
  system Alien::SeqAlignment::hmmer3->esl_seqrange   (parameters & options);
  system Alien::SeqAlignment::hmmer3->esl_seqstat    (parameters & options);
  system Alien::SeqAlignment::hmmer3->esl_sfetch     (parameters & options);
  system Alien::SeqAlignment::hmmer3->esl_shuffle    (parameters & options);
  system Alien::SeqAlignment::hmmer3->esl_ssdraw     (parameters & options);
  system Alien::SeqAlignment::hmmer3->esl_translate  (parameters & options);
  system Alien::SeqAlignment::hmmer3->esl_weight     (parameters & options);

=head1 DESCRIPTION

lib/Alien/SeqAlignment/hmmer3.pm  view on Meta::CPAN

=head2 esl_mixdchlet

  Alien::SeqAlignment::hmmer3->esl_mixdchlet (parameters & options);
esl_mixdchlet - fitting mixture Dirichlets to count data

=head2 esl_reformat

  Alien::SeqAlignment::hmmer3->esl_reformat (parameters & options);
esl_reformat - convert sequence file formats

=head2 esl_selectn

  Alien::SeqAlignment::hmmer3->esl_selectn (parameters & options);
esl_selectn - select random subset of lines from file

=head2 esl_seqrange

  Alien::SeqAlignment::hmmer3->esl_seqrange (parameters & options);
esl_seqrange - determine a range of sequences for one of many parallel

=head2 esl_seqstat
  
    Alien::SeqAlignment::hmmer3->esl_seqstat (parameters & options);
esl_seqstat - summarize contents of a sequence file