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ABI.pm  view on Meta::CPAN

  my $abi = ABI->new(-file=>"mysequence.abi");
  my $seq = $abi->get_sequence(); # To get the sequence
  my @trace_a = $abi->get_trace("A"); # Get the raw traces for "A"
  my @trace_g = $abi->get_trace("G"); # Get the raw traces for "G"
  my @base_calls = $abi->get_base_calls(); # Get the base calls

=head1 DESCRIPTION

An ABI chromatogram file is in binary format. It contain several 
information only some of which is required for normal use. This
module only gives access to the most used information stored in
ABI file. All the accesses are read only.

If you have edited the file using a trace editor, then you can use the corresponding 
method to access the edited sequence and base calls.



=head1 CONSTRUCTOR

LICENSE  view on Meta::CPAN

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README  view on Meta::CPAN

================

Perl module to parse chromatogram file generated by Applied Biosystems (ABI)
automated DNA sequencer.

The README is used to introduce the module and provide instructions on
how to install the module, any machine dependencies it may have (for
example C compilers and installed libraries) and any other information
that should be provided before the module is installed.

A README file is required for CPAN modules since CPAN extracts the
README file from a module distribution so that people browsing the
archive can use it get an idea of the modules uses. It is usually a
good idea to provide version information here so that people can
decide whether fixes for the module are worth downloading.

INSTALLATION

To install this module type the following:

   perl Makefile.PL