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FDL.txt  view on Meta::CPAN

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utils/datasetCreator/applyMaxThreshold.pl  view on Meta::CPAN

	    #update the unique co-occurrence counts
	    $count{$cui1}++;
	}
	else {
	    #update the cooccurrence count
	    chomp $val; #I'm not sure if this is necassary...probably not
	    $count{$cui1}+=$val;
	}
	
	#NOTE: do not update counts for $2, because in the case where order 
	#does not matter, the matrix will have been pre-processed to ensure 
	#the second cui will appear first in the key. In the case where order 
	#does matter we just shouldnt be counting it anyway
    }
    close IN;

    return \%count;
}

#applies a maxThreshold, $countRef is the output of getStats
sub applyMaxThreshold {

utils/datasetCreator/dataStats/getCUICooccurrences.pl  view on Meta::CPAN

    #split the line
    ($cui1, $cui2, $val) = split(/\t/,$line);

    #update the cooccurrence count
    $coCount{$cui1}+=$val;
    
    #update the unique co-occurrence counts
    $ucoCount{$cui1}++;

    #NOTE: do not update counts for 2, because in the case where order 
    #does not matter, the matrix will have been pre-processed to ensure 
    #the second cui will appear first in the key. In the case where order 
    #does matter we just shouldnt be counting it anyway
}
close IN;

print "Outputting Results\n";
#output the co-occurrence counts, sorted by number of unique
# co-occurrences (descending)
foreach my $cui(sort {$ucoCount{$b}<=>$ucoCount{$a}} keys %ucoCount) {
    #coCount and ucoCount will have the same keys (see above loop)