CaCORE

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html/CaBIO.html  view on Meta::CPAN

<dd>
<p>data type: <code>long</code></p>
</dd>
</li>
<dt><strong>id</strong>

<dd>
<p>data type: <code>long</code></p>
</dd>
</li>
<dt><strong><a name="item_similaritypercentage">similarityPercentage</a></strong>

<dd>
<p>data type: <code>float</code></p>
</dd>
</li>
</dl>
<p>Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.</p>
<p>

html/intro.html  view on Meta::CPAN

<p>All objects that are associated with the current object can be access via the <code>getX</code> (for many-to-one associations)
	or <code>getXCollection</code> (for one-to-many associations) methods. Where "X" is the name of the associated object.
	Example: <code>$gene->getTaxon</code> retrieves the Taxon object associated with the Gene object, since one Taxon
	object is associated with many Gene objects, and <code>$gene->getPathwayCollection</code> retrieves all the Pathway objects associated,
	with the Gene object. Since one Gene object is associated with many Pathway objects.</p>

<p>The following table is a description of all objects associated with Gene, how they are related, and the methods of retrieving them.

<TABLE border="1"
          summary="This table gives some statistics about fruit
                   flies: average height and weight, and percentage
                   with red eyes (for both males and females).">
<CAPTION><EM>Gene associations</EM></CAPTION>
<TR><TH>Association Object Name<TH>Relationship<TH>Getter
	<TR><TH>Chromosome<TD>Many to one<TD>getChromosome
	<TR><TH>DatabaseCrossReference<TD>One to many<TD>getDatabaseCrossReferenceCollection
	<TR><TH>ExpressionFeature<TD>One to many<TD>getExpressionFeatureCollection
	<TR><TH>GeneAlias<TD>One to many<TD>getGeneAliasCollection
	<TR><TH>GeneOntology<TD>One to many<TD>getGeneOntologyCollection
	<TR><TH>GeneRelativeLocation<TD>One to many<TD>getGeneRelativeLocationCollection
	<TR><TH>GenericReporter<TD>One to many<TD>getGenericReporterCollection



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