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README  view on Meta::CPAN

  esl_alimask
      Alien::SeqAlignment::hmmer3->esl_alimask (parameters & options);

  esl_alimerge
        Alien::SeqAlignment::hmmer3->esl_alimerge (parameters & options);
    esl_alimerge - merge alignments based on their reference (RF) annotation

  esl_alipid
      Alien::SeqAlignment::hmmer3->esl_alipid (parameters & options);
    esl_alipid - calculate pairwise percent identities for all sequence

  esl_alirev
      Alien::SeqAlignment::hmmer3->esl_alirev (parameters & options);
    esl_alirev - reverse complement a multiple alignment

  esl_alistat
      Alien::SeqAlignment::hmmer3->esl_alistat (parameters & options);
    esl_alistat - summarize a multiple sequence alignment file

  esl_compalign

lib/Alien/SeqAlignment/hmmer3.pm  view on Meta::CPAN

  Alien::SeqAlignment::hmmer3->esl_alimask (parameters & options);

=head2 esl_alimerge
  
    Alien::SeqAlignment::hmmer3->esl_alimerge (parameters & options);
esl_alimerge - merge alignments based on their reference (RF) annotation

=head2 esl_alipid

  Alien::SeqAlignment::hmmer3->esl_alipid (parameters & options);
esl_alipid - calculate pairwise percent identities for all sequence

=head2 esl_alirev

  Alien::SeqAlignment::hmmer3->esl_alirev (parameters & options);
esl_alirev - reverse complement a multiple alignment

=head2 esl_alistat

  Alien::SeqAlignment::hmmer3->esl_alistat (parameters & options);
esl_alistat - summarize a multiple sequence alignment file