ABI

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ABI.pm  view on Meta::CPAN

		return @{ $self->{T} };
	} else {
		croak "Illegal symbol\n";
	}
}

=head2 get_sequence()

  Title    : get_sequence()
  Usage    : my $seq = $abi->get_sequence();
  Function : Returns the original unedited sequence as string. If you want to access the edited
             sequence use "get_corrected_sequence()" instead.
  Args     : Nothing
  Returns  : A scalar

=cut

sub get_sequence {
	my $self = shift;
	return $self->{_sequence};
}

=head2 get_corrected_sequence()

  Title    : get_corrected_sequence()
  Usage    : my $seq = $abi->get_corrected_sequence();
  Function : Returns the corrected sequence as string. If you want to access the original 
             unedited sequence, use "get_sequence()" instead.
  Args     : Nothing
  Returns  : A scalar

=cut

sub get_corrected_sequence {
	my $self = shift;
	return $self->{_sequence_corrected};
}

ABI.pm  view on Meta::CPAN

sub get_trace_length {
	my $self = shift;
	return $self->{_trace_length};
}

=head2 get_base_calls()

  Title    : get_base_calls()
  Usage    : my @base_calls = $abi->get_base_calls();
  Function : Returns the called bases by the base caller. This method will return the unedited 
  	         original basecalls created by the basecaller.
  Args     : Nothing
  Returns  : An array

=cut

sub get_base_calls {
	my $self = shift;
	return @{ $self->{_basecalls} };
}

Changes  view on Meta::CPAN

1.0  Sat Nov  18  04:22:53 2006
	- Changed to Module::Build system
	- Added test data
	- Changed to Test::More
	- Access to user modified sequence
	- Access to user modified basecalls
	

0.01  Thu May  2 04:22:53 2002
	- original version; created by h2xs 1.21 with options
		-XA -n ABI

LICENSE  view on Meta::CPAN

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