BioSAILs

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META.json  view on Meta::CPAN

            "MooseX::App::Role" : "0",
            "MooseX::Object::Pluggable" : "0",
            "MooseX::Types" : "0",
            "MooseX::Types::Moose" : "0",
            "MooseX::Types::Path::Tiny" : "0",
            "Path::Tiny" : "0",
            "Sort::Versions" : "0",
            "Try::Tiny" : "0",
            "Version::Next" : "0",
            "YAML" : "0",
            "namespace::autoclean" : "0",
            "perl" : "5.010",
            "strict" : "0",
            "utf8" : "0"
         }
      },
      "test" : {
         "requires" : {
            "File::Spec::Functions" : "0",
            "FindBin" : "0",
            "Moose" : "0",

META.yml  view on Meta::CPAN

  MooseX::App::Role: '0'
  MooseX::Object::Pluggable: '0'
  MooseX::Types: '0'
  MooseX::Types::Moose: '0'
  MooseX::Types::Path::Tiny: '0'
  Path::Tiny: '0'
  Sort::Versions: '0'
  Try::Tiny: '0'
  Version::Next: '0'
  YAML: '0'
  namespace::autoclean: '0'
  perl: '5.010'
  strict: '0'
  utf8: '0'
resources:
  bugtracker: https://github.com/biosails/BioSAILs/issues
  homepage: https://github.com/biosails/BioSAILs
  repository: https://github.com/biosails/BioSAILs.git
version: '0.02'
x_serialization_backend: 'YAML::Tiny version 1.70'

lib/BioSAILs/Integrations/Github.pm  view on Meta::CPAN

package BioSAILs::Integrations::Github;

use MooseX::App::Role;
use namespace::autoclean;

use Git::Wrapper;
use Git::Wrapper::Plus::Ref::Tag;
use Git::Wrapper::Plus::Tags;
use Git::Wrapper::Plus::Branches;

use Try::Tiny;

use Sort::Versions;
use Version::Next qw/next_version/;

lib/BioSAILs/Utils.pm  view on Meta::CPAN

package BioSAILs::Utils;

use Moose::Role;
use namespace::autoclean;

use IPC::Cmd qw[can_run run run_forked];

=head3 run_short_command

This function is for running quick running commands that we don't need to buffer
the output for.

A long running command is given in
HPC::Runner::Command::submit_jobs::Utils::Scheduler::Submit

lib/BioSAILs/Utils/CacheUtils.pm  view on Meta::CPAN

package BioSAILs::Utils::CacheUtils;

use Moose::Role;
use namespace::autoclean;

with 'BioSAILs::Utils::LoadConfigs';

use YAML;

=head3 comment_char

Default comment char is '#'.

=cut

lib/BioSAILs/Utils/Files/CacheDir.pm  view on Meta::CPAN

package BioSAILs::Utils::Files::CacheDir;

use Moose::Role;
use namespace::autoclean;

use MooseX::Types::Path::Tiny qw/Path/;
use Cwd qw(getcwd);
use File::Spec;

has 'cache_dir' => (
    is      => 'rw',
    isa     => Path,
    coerce  => 1,
    default => sub {

lib/BioSAILs/Utils/LoadConfigs.pm  view on Meta::CPAN

package BioSAILs::Utils::LoadConfigs;

use 5.010;
use utf8;

use namespace::autoclean;
use MooseX::App::Role;

use Config::Any;
use File::HomeDir;
use Cwd;
use MooseX::Types::Path::Tiny qw/Path Paths AbsPaths AbsFile/;
use Path::Tiny;
use Try::Tiny;
use Hash::Merge qw( merge );

lib/BioSAILs/Utils/Plugin.pm  view on Meta::CPAN

package BioSAILs::Utils::Plugin;

use MooseX::App::Role;
use namespace::autoclean;

use IO::File;
use File::Path qw(make_path remove_tree);

use IPC::Cmd;
use Cwd qw(getcwd);
use Try::Tiny;
use List::Util qw(uniq);

with 'MooseX::Object::Pluggable';

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