Bio-ViennaNGS

 view release on metacpan or  search on metacpan

META.json  view on Meta::CPAN

            "Path::Class" : "0",
            "PerlIO::gzip" : "0",
            "Pod::Usage" : "0",
            "Template" : "0",
            "Test::Deep" : "0",
            "Test::File::Contents" : "0",
            "Test::Files" : "0",
            "Tie::Hash::Indexed" : "0",
            "constant" : "0",
            "lib" : "0",
            "namespace::autoclean" : "0",
            "perl" : "5.010",
            "strict" : "0",
            "version" : "0",
            "warnings" : "0"
         }
      }
   },
   "release_status" : "stable",
   "version" : "v0.19.2",
   "x_serialization_backend" : "JSON::PP version 2.97001"

META.yml  view on Meta::CPAN

  Path::Class: '0'
  PerlIO::gzip: '0'
  Pod::Usage: '0'
  Template: '0'
  Test::Deep: '0'
  Test::File::Contents: '0'
  Test::Files: '0'
  Tie::Hash::Indexed: '0'
  constant: '0'
  lib: '0'
  namespace::autoclean: '0'
  perl: '5.010'
  strict: '0'
  version: '0'
  warnings: '0'
version: v0.19.2
x_serialization_backend: 'CPAN::Meta::YAML version 0.018'

Makefile.PL  view on Meta::CPAN

				    "File::Temp" 	           => '0',
				    "File::Slurp"                  => '0',
				    "FindBin"                      => '0',
				    "IPC::Cmd" 		           => '0',
				    "lib"                          => '0',
				    "List::Util"                   => '0',
				    "Moose"      		   => '0',
				    "MooseX::Clone"                => '0',
				    "Moose::Util::TypeConstraints" => '0',
				    "Moose::Role"                  => '0',
				    "namespace::autoclean"         => '0',
				    "Path::Class" 	           => '0',
				    "Math::Round"                  => '0',
				    "Params::Coerce"               => '0',
				    "Pod::Usage" 	           => '0',
				    "PerlIO::gzip"                 => '0',
				    "POSIX" 		           => '0',
				    "strict"                       => '0',
				    "Template"                     => '0',
				    "Test::Files"                  => '0',
				    "Test::File::Contents"         => '0',

lib/Bio/ViennaNGS/AnnoC.pm  view on Meta::CPAN

# -*-CPerl-*-
# Last changed Time-stamp: <2017-06-10 18:18:45 michl>

package Bio::ViennaNGS::AnnoC;
use Bio::ViennaNGS;
use Bio::ViennaNGS::Util qw(sortbed);
use Bio::Tools::GFF;
use Path::Class;
use Carp;
use Moose;
use namespace::autoclean;
use version; our $VERSION = version->declare(eval($Bio::ViennaNGS::VERSION));

has 'accession' => (
		    is => 'rw',
		    isa => 'Str',
		    predicate => 'has_accession',
		   );

has 'features' => (
		   is => 'ro',

lib/Bio/ViennaNGS/Bed.pm  view on Meta::CPAN

# -*-CPerl-*-
# Last changed Time-stamp: <2017-06-10 18:20:26 michl>

package Bio::ViennaNGS::Bed;

use Bio::ViennaNGS;
use Carp;
use Moose;
use namespace::autoclean;
use Data::Dumper;
use version; our $VERSION = version->declare("$Bio::ViennaNGS::VERSION");

extends 'Bio::ViennaNGS::Feature';

has '+strand' => (
		  required => 1,
		 );

has 'thickStart' => (

lib/Bio/ViennaNGS/FeatureIntervalN.pm  view on Meta::CPAN

# -*-CPerl-*-
# Last changed Time-stamp: <2018-07-03 12:59:06 mtw>

package Bio::ViennaNGS::FeatureIntervalN;

use version; our $VERSION = version->declare("$Bio::ViennaNGS::VERSION");
use namespace::autoclean;
use Moose;

extends 'Bio::ViennaNGS::FeatureInterval';

has 'name' => (
               is  => 'rw',
               isa => 'Str',
               required => '1',
               predicate => 'has_name',
              );

lib/Bio/ViennaNGS/FeatureLine.pm  view on Meta::CPAN

# -*-CPerl-*-
# Last changed Time-stamp: <2017-06-10 19:03:07 michl>

package Bio::ViennaNGS::FeatureLine;

use Bio::ViennaNGS;
use Moose;
use namespace::autoclean;
use version; our $VERSION = version->declare("$Bio::ViennaNGS::VERSION");

extends 'Bio::ViennaNGS::MinimalFeature';

has 'id' => (
	     is => 'rw',
	     isa => 'Str', # e.g. a transcript ID
	     required => '1',
	    );

lib/Bio/ViennaNGS/MinimalFeature.pm  view on Meta::CPAN

# -*-CPerl-*-
# Last changed Time-stamp: <2018-01-09 23:56:32 mtw>

package Bio::ViennaNGS::MinimalFeature;

use Bio::ViennaNGS;
use namespace::autoclean;
use Moose;
use Bio::ViennaNGS::Subtypes;
use version; our $VERSION = version->declare("$Bio::ViennaNGS::VERSION");

extends 'Bio::ViennaNGS::FeatureInterval';

has 'strand' => (
		 is      => 'rw',
		 isa     => 'Bio::ViennaNGS::PlusOrMinus',
		 default => '.',

lib/Bio/ViennaNGS/Peak.pm  view on Meta::CPAN

package Bio::ViennaNGS::Peak;

use Bio::ViennaNGS;
use Moose;
use Carp;
use Data::Dumper;
use Path::Class;
use List::Util qw(sum sum0 min max first);
use Bio::ViennaNGS::Util qw(sortbed);
use namespace::autoclean;
use File::Temp qw(tempfile);
use version; our $VERSION = version->declare("$Bio::ViennaNGS::VERSION");

has 'data' => (
	       is => 'ro',
	       isa => 'HashRef',
	       predicate => 'has_data',
	       default => sub { {} },
	      );

 view all matches for this distribution
 view release on metacpan -  search on metacpan