Bio-MUST-Apps-HmmCleaner

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META.yml  view on Meta::CPAN

  IPC::System::Simple: '0'
  List::AllUtils: '0'
  Modern::Perl: '0'
  Moose: '0'
  Path::Class: '0'
  Smart::Comments: '0'
  Template: '0'
  Test::Most: '0'
  aliased: '0'
  autodie: '0'
  namespace::autoclean: '0'
  perl: '5.010'
version: '0.243280'
x_generated_by_perl: v5.26.3
x_serialization_backend: 'YAML::Tiny version 1.74'
x_spdx_expression: 'Artistic-1.0-Perl OR GPL-1.0-or-later'

Makefile.PL  view on Meta::CPAN

    "IPC::System::Simple" => 0,
    "List::AllUtils" => 0,
    "Modern::Perl" => 0,
    "Moose" => 0,
    "Path::Class" => 0,
    "Smart::Comments" => 0,
    "Template" => 0,
    "Test::Most" => 0,
    "aliased" => 0,
    "autodie" => 0,
    "namespace::autoclean" => 0
  },
  "TEST_REQUIRES" => {
    "Test::Files" => 0,
    "Test::Most" => 0
  },
  "VERSION" => "0.243280",
  "test" => {
    "TESTS" => "t/*.t"
  }
);

Makefile.PL  view on Meta::CPAN

  "List::AllUtils" => 0,
  "Modern::Perl" => 0,
  "Moose" => 0,
  "Path::Class" => 0,
  "Smart::Comments" => 0,
  "Template" => 0,
  "Test::Files" => 0,
  "Test::Most" => 0,
  "aliased" => 0,
  "autodie" => 0,
  "namespace::autoclean" => 0
);


unless ( eval { ExtUtils::MakeMaker->VERSION(6.63_03) } ) {
  delete $WriteMakefileArgs{TEST_REQUIRES};
  delete $WriteMakefileArgs{BUILD_REQUIRES};
  $WriteMakefileArgs{PREREQ_PM} = \%FallbackPrereqs;
}

delete $WriteMakefileArgs{CONFIGURE_REQUIRES}

lib/Bio/MUST/Apps/HmmCleaner.pm  view on Meta::CPAN

package Bio::MUST::Apps::HmmCleaner;
# ABSTRACT: Main class for HmmCleaner
# CONTRIBUTOR: Denis BAURAIN <denis.baurain@uliege.be>
$Bio::MUST::Apps::HmmCleaner::VERSION = '0.243280';
use Moose;
use namespace::autoclean;

use Smart::Comments -ENV;
use List::AllUtils qw/uniq max/;
use Modern::Perl;

use Carp;
use Path::Class;

use Bio::MUST::Core 0.180230;
use Bio::MUST::Core::Constants qw(:gaps :files);

lib/Bio/MUST/Apps/HmmCleaner/Cleaner.pm  view on Meta::CPAN

package Bio::MUST::Apps::HmmCleaner::Cleaner;
# ABSTRACT: Cleaner class for HmmCleaner
# CONTRIBUTOR: Denis BAURAIN <denis.baurain@uliege.be>
$Bio::MUST::Apps::HmmCleaner::Cleaner::VERSION = '0.243280';
use Moose;
use namespace::autoclean;

use Carp;
use Smart::Comments -ENV;
use List::AllUtils qw/max pairmap indexes/;
use Modern::Perl;

use Bio::MUST::Core 0.180230;
use Bio::MUST::Core::Constants qw(:gaps :files);
use aliased 'Bio::MUST::Core::SeqMask';
use aliased 'Bio::MUST::Core::Seq';

lib/Bio/MUST/Apps/HmmCleaner/Process.pm  view on Meta::CPAN

package Bio::MUST::Apps::HmmCleaner::Process;
# ABSTRACT: Process class for HmmCleaner
# CONTRIBUTOR: Denis BAURAIN <denis.baurain@uliege.be>
$Bio::MUST::Apps::HmmCleaner::Process::VERSION = '0.243280';
use Moose;
use namespace::autoclean;

use Carp;
use Smart::Comments -ENV;
use Modern::Perl;

use Bio::MUST::Core 0.180230;
use Bio::MUST::Core::Constants qw(:gaps :files);
use Bio::FastParsers::Hmmer;
use aliased 'Bio::MUST::Core::Seq';