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README.md  view on Meta::CPAN

        -? -h --help    show help

    Available commands:

      commands: list the application's commands
          help: display a command's help screen

        circos: range links to circos links or highlight file
         clean: replace ranges within links, incorporate hit strands and remove nested links
       connect: connect bilaterial links into multilateral ones
        create: create blocked fasta files from range links
        filter: filter links by numbers of ranges or length difference
         merge: merge overlapped ranges via overlapping graph
       replace: replace ranges within links and incorporate hit strands
          sort: sort links and ranges within links

See `rangeops commands` for usage information.

# DESCRIPTION

Types of links:

lib/App/Rangeops.pm  view on Meta::CPAN

        -? -h --help    show help

    Available commands:

      commands: list the application's commands
          help: display a command's help screen

        circos: range links to circos links or highlight file
         clean: replace ranges within links, incorporate hit strands and remove nested links
       connect: connect bilaterial links into multilateral ones
        create: create blocked fasta files from range links
        filter: filter links by numbers of ranges or length difference
         merge: merge overlapped ranges via overlapping graph
       replace: replace ranges within links and incorporate hit strands
          sort: sort links and ranges within links

See C<rangeops commands> for usage information.

=head1 DESCRIPTION

Types of links:

lib/App/Rangeops/Command/create.pm  view on Meta::CPAN

package App::Rangeops::Command::create;
use strict;
use warnings;
use autodie;

use App::Rangeops -command;
use App::Rangeops::Common;

sub abstract {
    return 'create blocked fasta files from range links';
}

sub opt_spec {
    return (
        [ "outfile|o=s", "Output filename. [stdout] for screen." ],
        [ "genome|g=s", "Reference genome file.", { required => 1 }, ],
        [ "name|n=s", "Default name for ranges.", ],
    );
}