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t/data/knownGene_out_of_order.dumped_result  view on Meta::CPAN

              'end' => '45664',
              'derived_features' => [],
              'phase' => undef,
              'strand' => '-',
              'type' => 'mRNA',
              'attributes' => {
                                'ID' => [
                                          'AB000114'
                                        ],
                                'Note' => [
                                            'guess what this thing has another location'
                                          ]
                              },
              'start' => '11234'
            }
          ],
          [
            {
              'source' => 'BLASTN',
              'seq_id' => 'chr9',
              'child_features' => [],

t/data/knownGene_out_of_order.gff3  view on Meta::CPAN

chr17	UCSC	CDS	62468039	62468236	.	-	1	Parent=A00469
chr17	UCSC	fakething	1	500	.	-	2	Derives_from=A00469;Parent=AB000114,A00469;Note=crazy multi-parent out-of-order thing, also including a Derives_from
chr17	UCSC	CDS	62468490	62468654	.	-	2	Parent=A00469
chr17	UCSC	mRNA	62467934	62469545	.	-	.	ID=A00469;Dbxref=AFFX-U133:205840_x_at,Locuslink:2688,Genbank-mRNA:A00469,Swissprot:P01241,PFAM:PF00103,AFFX-U95:1332_f_at,Swissprot:SOMA_HUMAN;Note=growth%20hormone%201;Alias=GH1
chr17	UCSC	three_prime_UTR	62467934	62468038	.	-	.	Parent=A00469
chr17	UCSC	CDS	62468747	62468866	.	-	1	Parent=A00469
chr17	UCSC	CDS	62469076	62469236	.	-	1	Parent=A00469
chr17	UCSC	CDS	62469497	62469506	.	-	0	Parent=A00469
chr17	UCSC	five_prime_UTR	62469507	62469545	.	-	.	Parent=A00469
chr9	UCSC	mRNA	90517946	90527968	.	-	.	ID=AB000114;Ontology_term=GO:0007155,GO:0005194;Ontology_term=GO:0005578;Dbxref=AFFX-U95:41031_at,Genbank-protein:BAA19055,Unigene:Hs.94070,AFFX-U133:205907_s_at,Genbank-mRNA:AB000114,Locuslink:4958,Swissprot:Q9...
chr30	UCSC	mRNA	11234	45664	.	-	.	ID=AB000114;Note=guess what this thing has another location
#.	UCSC	protein	.	.	.	.	.	ID=BAA19055;Parent=AB000114
chr9	UCSC	three_prime_UTR	90517946	90518841	.	-	.	Parent=AB000114
chr9	UCSC	CDS	90518842	90519167	.	-	1	Parent=AB000114
chr9	UCSC	CDS	90520309	90521248	.	-	0	Parent=AB000114
chr17	UCSC	otherfakething	1	500	.	-	2	Derives_from=A00469;Parent=AB000114,A00469;Note=crazy multi-parent thing, but this time coming after its parents
chr9	UCSC	five_prime_UTR	90521249	90521264	.	-	.	Parent=AB000114
chr9	UCSC	five_prime_UTR	90527892	90527968	.	-	.	Parent=AB000114
###
chr9	BLASTN	match	90518850	90521248	0.0	+	.	ID=blastresult.1;Target=BC046356.1 178 1828;Gap=M78 I759 M1561
##FASTA