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README  view on Meta::CPAN

  parasail_aligner
     Alien::SeqAlignment::parasail->parasail_aligner

    Returns the command name for running the CLI version of the parasail
    aligner.

SEE ALSO
    *   parasail <https://github.com/jeffdaily/parasail>

        parasail is a SIMD C (C99) library containing implementations of the
        Smith-Waterman (local), Needleman-Wunsch (global), and various
        semi-global pairwise sequence alignment algorithms. Here,
        semi-global means insertions before the start or after the end of
        either the query or target sequence are optionally not penalized.
        parasail implements most known algorithms for vectorized pairwise
        sequence alignment, including diagonal , blocked , striped , and
        prefix scan. Therefore, parasail is a reference implementation for
        these algorithms in addition to providing an implementation of the
        best-performing algorithm(s) to date on today's most advanced CPUs.

        parasail implements the above algorithms currently in three
        variants, 1) returning the alignment score and ending locations, 2)
        additionally returning alignment statistics (number of exact matches

lib/Alien/SeqAlignment/parasail.pm  view on Meta::CPAN

  $class->runtime_prop->{command} ;
}

=head1 SEE ALSO

=over 4

=item * L<parasail|https://github.com/jeffdaily/parasail>

parasail is a SIMD C (C99) library containing implementations of the 
Smith-Waterman (local), Needleman-Wunsch (global), and various 
semi-global pairwise sequence alignment algorithms. Here, semi-global 
means insertions before the start or after the end of either the query 
or target sequence are optionally not penalized. parasail implements 
most known algorithms for vectorized pairwise sequence alignment, 
including diagonal , blocked , striped , and prefix scan. Therefore, 
parasail is a reference implementation for these algorithms in 
addition to providing an implementation of the best-performing 
algorithm(s) to date on today's most advanced CPUs.

parasail implements the above algorithms currently in three variants, 
1) returning the alignment score and ending locations,