GOBO
view release on metacpan or search on metacpan
GOBO/Formula.pm view on Meta::CPAN
GOBO::Formula
=head1 SYNOPSIS
=head1 DESCRIPTION
(Advanced OBO ontologies only)
Formulas have the roles GOBO::Attributed and GOBO::Identified. This
means they can have metadata attached. For example, who made the
formula and when.
=cut
1;
GOBO/Graph.pm view on Meta::CPAN
has 'annotation_ix' => (is => 'rw', isa => 'GOBO::Indexes::StatementIndex',
default=>sub{ new GOBO::Indexes::StatementIndex() },
handles => { annotations => 'statements', add_annotation => 'add_statement', add_annotations => 'add_statements', annotated_entities => 'referenced_nodes', remove_annotations => 'remove_statements', remove_annotation => 'remove_state...
);
#has 'node_index' => (is => 'rw', isa => 'HashRef[GOBO::Node]', default=>sub{{}});
has 'node_index' => (is => 'rw', isa => 'GOBO::Indexes::NodeIndex',
default=>sub{ new GOBO::Indexes::NodeIndex() },
handles => [ 'nodes' ],
);
has 'subset_index' => (is => 'rw', isa => 'HashRef[GOBO::Subset]', default=>sub{{}});
has 'formulae' => (is => 'rw', isa => 'ArrayRef[GOBO::Formula]', default=>sub{[]});
#sub nodes {
# my $self = shift;
# return $self->node_index->nodes;
#}
sub referenced_nodes {
my $self = shift;
return $self->node_index->nodes;
GOBO/Graph.pm view on Meta::CPAN
return undef;
}
sub has_subsets {
my $self = shift;
return 1 if scalar @{$self->declared_subsets};
return undef;
}
*has_declared_subsets = \&has_subsets;
sub has_formulae {
my $self = shift;
return 1 if scalar @{$self->formulae};
return undef;
}
sub has_links {
my $self = shift;
return 1 if scalar @{$self->links};
return undef;
}
sub has_annotations {
GOBO/Graph.pm view on Meta::CPAN
delete $self->relation_h->{$id};
}
if ($cascade) {
$self->remove_link($_) foreach @{$self->get_outgoing_links($n)};
$self->remove_link($_) foreach @{$self->get_incoming_links($n)};
}
return $self->node_index->remove_node($n);
}
sub add_formula { my $self = shift; push(@{$self->formulae},@_) }
=head2 get_outgoing_links (subject GOBO::Node, relation GOBO::RelationNode OPTIONAL)
given a subject (child), get target (parent) links
if relation is specified, also filters results on relation
=cut
sub get_outgoing_links {
GOBO/Parsers/OBOParser.pm view on Meta::CPAN
}
elsif (/^description:\s*(.*)/) {
$n->description($1);
}
elsif (/^source:\s*(.*)/) {
$n->provenance($self->getnode($1));
}
elsif (/^assigned_by:\s*(.*)/) {
$n->source($self->getnode($1));
}
elsif (/^formula:\s*(.*)/) {
_parse_vals($1,$vals);
my $f = new GOBO::Formula(text=>$vals->[0],
language=>$vals->[1]);
$f->associated_with($n);
$g->add_formula($f);
}
else {
# warn "ignored: $_";
# ...
}
}
if (@anns) {
$g->add_annotations(\@anns);
}
return;
GOBO/Parsers/OBOParserDispatchHash.pm view on Meta::CPAN
"source" => sub {
my ($self, $args) = @_;
# $args->{node}->provenance($self->getnode($args->{value}));
$args->{node}->provenance($args->{graph}->noderef($args->{value}));
},
"assigned_by" => sub {
my ($self, $args) = @_;
# $args->{node}->source($self->getnode($args->{value}));
$args->{node}->source($args->{graph}->noderef($args->{value}));
},
"formula" => sub {
my ($self, $args) = @_;
my $vals = [];
_parse_vals($args->{value},$vals);
my $f = new GOBO::Formula(text=>$vals->[0],
language=>$vals->[1]);
$f->associated_with($args->{node});
$args->{graph}->add_formula($f);
},
};
my $header_subs = {
'subsetdef' => sub {
my ($self, $args) = @_;
# subsetdef: gosubset_prok "Prokaryotic GO subset"
if ($args->{value} =~ /^(\S+)\s+\"(.*)\"/)
'
],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN1, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0xd32448)',
'subset_index' => 'HASH(0xd3255c)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0xd32400)',
'formulae' => 'ARRAY(0xd32394)',
'instance_h' => 'HASH(0xd32100)',
'term_h' => 'HASH(0xd324d8)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0xd32364)',
'relation_h' => 'HASH(0xd32340)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
inferred FB:FBgn0010339 "128up" GO:0005525 --> GO:0046123 "purine deoxyribonucleoside biosynthetic process"
Header has been parsed!
parser: $VAR1 = bless( {
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN1, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0xd44f5c)',
'subset_index' => 'HASH(0xd457cc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0xd3dc34)',
'formulae' => 'ARRAY(0xd45088)',
'instance_h' => 'HASH(0xd45748)',
'term_h' => 'HASH(0xd452bc)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0xd45430)',
'relation_h' => 'HASH(0xd45808)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 2,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN1, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0xd45d18)',
'subset_index' => 'HASH(0xd45b14)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0xd3dafc)',
'formulae' => 'ARRAY(0xd4843c)',
'instance_h' => 'HASH(0x87c1b8)',
'term_h' => 'HASH(0xd45934)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0xd45db4)',
'relation_h' => 'HASH(0xd116c4)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
ok
t/gaftest....................ok
t/gaftest_chunked............Header has been parsed!
'
],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x81378c)',
'subset_index' => 'HASH(0x813abc)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813b4c)',
'formulae' => 'ARRAY(0x813c54)',
'instance_h' => 'HASH(0xcdd714)',
'term_h' => 'HASH(0x813bd0)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813be8)',
'relation_h' => 'HASH(0xcdd8e8)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
ok
t/gaftest_chunked_gzipped....Header has been parsed!
parser: $VAR1 = bless( {
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x813a2c)',
'subset_index' => 'HASH(0x813d5c)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813de0)',
'formulae' => 'ARRAY(0x813ee8)',
'instance_h' => 'HASH(0xcdd9c0)',
'term_h' => 'HASH(0x813e64)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813e7c)',
'relation_h' => 'HASH(0x8137a4)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x813a2c)',
'subset_index' => 'HASH(0x813d5c)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813de0)',
'formulae' => 'ARRAY(0x813ee8)',
'instance_h' => 'HASH(0xcdd9c0)',
'term_h' => 'HASH(0x813e64)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813e7c)',
'relation_h' => 'HASH(0x8137a4)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x813a2c)',
'subset_index' => 'HASH(0x813d5c)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813de0)',
'formulae' => 'ARRAY(0x813ee8)',
'instance_h' => 'HASH(0xcdd9c0)',
'term_h' => 'HASH(0x813e64)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813e7c)',
'relation_h' => 'HASH(0x8137a4)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x813a2c)',
'subset_index' => 'HASH(0x813d5c)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813de0)',
'formulae' => 'ARRAY(0x813ee8)',
'instance_h' => 'HASH(0xcdd9c0)',
'term_h' => 'HASH(0x813e64)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813e7c)',
'relation_h' => 'HASH(0x8137a4)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x813a2c)',
'subset_index' => 'HASH(0x813d5c)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813de0)',
'formulae' => 'ARRAY(0x813ee8)',
'instance_h' => 'HASH(0xcdd9c0)',
'term_h' => 'HASH(0x813e64)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813e7c)',
'relation_h' => 'HASH(0x8137a4)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x813a2c)',
'subset_index' => 'HASH(0x813d5c)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813de0)',
'formulae' => 'ARRAY(0x813ee8)',
'instance_h' => 'HASH(0xcdd9c0)',
'term_h' => 'HASH(0x813e64)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813e7c)',
'relation_h' => 'HASH(0x8137a4)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x813a2c)',
'subset_index' => 'HASH(0x813d5c)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813de0)',
'formulae' => 'ARRAY(0x813ee8)',
'instance_h' => 'HASH(0xcdd9c0)',
'term_h' => 'HASH(0x813e64)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813e7c)',
'relation_h' => 'HASH(0x8137a4)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x813a2c)',
'subset_index' => 'HASH(0x813d5c)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813de0)',
'formulae' => 'ARRAY(0x813ee8)',
'instance_h' => 'HASH(0xcdd9c0)',
'term_h' => 'HASH(0x813e64)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813e7c)',
'relation_h' => 'HASH(0x8137a4)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x813a2c)',
'subset_index' => 'HASH(0x813d5c)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813de0)',
'formulae' => 'ARRAY(0x813ee8)',
'instance_h' => 'HASH(0xcdd9c0)',
'term_h' => 'HASH(0x813e64)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813e7c)',
'relation_h' => 'HASH(0x8137a4)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
Header has been parsed!
parser: $VAR1 = bless( {
'max_chunk' => 10,
'checked_options' => 1,
'lines' => [],
'line_no' => 0,
'stalled' => 1,
'parsed_header' => 1,
'fh' => bless( \*Symbol::GEN0, 'FileHandle' ),
'graph' => bless( {
'node_index' => 'GOBO::Indexes::NodeIndex=HASH(0x813a2c)',
'subset_index' => 'HASH(0x813d5c)',
'annotation_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813de0)',
'formulae' => 'ARRAY(0x813ee8)',
'instance_h' => 'HASH(0xcdd9c0)',
'term_h' => 'HASH(0x813e64)',
'link_ix' => 'GOBO::Indexes::StatementIndex=HASH(0x813e7c)',
'relation_h' => 'HASH(0x8137a4)'
}, 'GOBO::Graph' )
}, 'GOBO::Parsers::GAFParser' );
ok
t/graph_creation.............graph: $VAR1 = bless( {
'annotation_ix' => bless( {
'offset_modifier' => 0,
'rd_nanosecs' => 0,
'tz' => bless( {
'name' => 'floating',
'offset' => 0
}, 'DateTime::TimeZone::Floating' ),
'utc_rd_days' => 733602,
'utc_rd_secs' => 48780,
'utc_year' => 2010
}, 'DateTime' ),
'formulae' => [],
'instance_h' => {},
'link_ix' => bless( {
'ixN' => {
'GO:0000001' => [
bless( {
'node' => bless( {
'id' => 'GO:0000001',
'label' => 'test term GO:0000001',
'namespace' => 'test_ontology',
'strict' => 0,
t/data/obo_file_2.obo view on Meta::CPAN
is_a: x-p2
is_a: x-p2-i {implied="true"}
intersection_of: x-g
intersection_of: x-r x-d
union_of: xu1
union_of: xu2
disjoint_from: x-c
relationship: part_of id-y
relationship: develops_from id-z {implied="true"}
equivalent_to: a^b^rel(c)
formula: "" KIF []
created_by: someone
creation_date: 2009-04-28T04:41:16Z
[Term]
id: id-y
name: name-y
def: "foo" []
is_a: y-p1
is_a: y-p2 {implied="true",method="reasoner-1"}
union_of: yu1
t/data/obo_file_2.obo view on Meta::CPAN
inverse_of_on_instance_level: r1inv_i
transitive_over: r1to
holds_over_chain: r1x r1y
holds_over_chain: r1x2 r1y2
equivalent_to_chain: r1x r1y
equivalent_to_chain: r1x2 r1y2
disjoint_over: r1disc
relationship: meta-r r2
equivalent_to: r1-eq
is_obsolete: false
formula: "r1(x,y) <-> ω(x) < j" Prover9 []
complement_of: r1neg
[Instance]
id: i1
name: i1-name
namespace: i1-ns
alt_id: i1-id2
comment: test
synonym: "i1 s1" RELATED []
xref: X:i1
t/data/roundtripme.obo view on Meta::CPAN
is_a: x-p2
is_a: x-p2-i {implied="true"}
intersection_of: x-g
intersection_of: x-r x-d
union_of: xu1
union_of: xu2
disjoint_from: x-c
relationship: part_of id-y
relationship: develops_from id-z {implied="true"}
equivalent_to: a^b^rel(c)
formula: "" KIF []
created_by: someone
creation_date: 2009-04-28T04:41:16Z
[Term]
id: id-y
name: name-y
def: "foo" []
is_a: y-p1
is_a: y-p2 {implied="true",method="reasoner-1"}
union_of: yu1
t/data/roundtripme.obo view on Meta::CPAN
inverse_of_on_instance_level: r1inv_i
transitive_over: r1to
holds_over_chain: r1x r1y
holds_over_chain: r1x2 r1y2
equivalent_to_chain: r1x r1y
equivalent_to_chain: r1x2 r1y2
disjoint_over: r1disc
relationship: meta-r r2
equivalent_to: r1-eq
is_obsolete: false
formula: "r1(x,y) <-> ω(x) < j" Prover9 []
complement_of: r1neg
[Instance]
id: i1
name: i1-name
namespace: i1-ns
alt_id: i1-id2
comment: test
synonym: "i1 s1" RELATED []
xref: X:i1
t/parsetest.t view on Meta::CPAN
$gaf_parser->parse_file("t/data/AT1G49810.gaf");
ok($gaf_parser->has_fh); # 17
undef $g2_AT1G;
$g2_AT1G = $gaf_parser->graph;
is_deeply($g_AT1G, $g2_AT1G, "parse_file: GAF parsers returned the same results"); # 18
## testing the OBO parsers...
my $tags = {
has_x => [ qw( nodes terms relations links declared_subsets annotations instances formulae ) ],
body_only => [ qw( nodes terms relations links annotations instances formulae ) ],
header_only => [ qw(default_namespace date comment format_version version property_value) ],
both => [ qw(declared_subsets) ],
};
eval { $obo_parser = new GOBO::Parsers::OBOParser(file=>'/a/load/of/bollox'); };
ok( defined $@ );
#check the OBOParser quickly...
$obo_parser = new GOBO::Parsers::OBOParser(file=>'t/data/gtp.obo');
$dh_parser = new GOBO::Parsers::OBOParserDispatchHash(file=>'t/data/gtp.obo');
( run in 0.667 second using v1.01-cache-2.11-cpan-3cd7ad12f66 )