Alien-SeqAlignment-edlib
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Query #0 (6 residues): score = 1
T: ACGTCG (5 - 10)
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Q: ACGACG (0 - 5)
SEE ALSO
* edlib <https://github.com/Martinsos/edlib>
Edlib is a lightweight and superfast C/C++ library for sequence
alignment using the edit (Levenshtein) distance between two or more
biological (usually) sequences. It can calculate the edit distance,
find the optimal aligment path and the coordinates (start/end)
locations. It supports multiple alignment modes such as global (NW),
prefix (SHW) and infix (HW). The library does not handle utf8 and
its primary use is to compute edit distances and alignments over
small (255 characters or fewer) alphabets as they occur in
bioinformatic applications.
* Text::Levenshtein::Edlib
<https://metacpan.org/pod/Text::Levenshtein::Edlib>
An XS library that also wraps around the edlib library and returns
edit distances, as well as alignment paths.
* Text::Levenshtein::XS
<https://metacpan.org/pod/Text::Levenshtein::XS>
An XS library that computes edit distances but not alignment paths.
See also its github repository at:
<https://github.com/ugexe/Text--Levenshtein--XS/>)
* Text::LevenshteinXS <https://metacpan.org/pod/Text::LevenshteinXS>
Yet another XS implementation of Levenshtein distance over strings
(no alignment path).
* Alien
lib/Alien/SeqAlignment/edlib.pm view on Meta::CPAN
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Q: ACGACG (0 - 5)
=head1 SEE ALSO
=over 4
=item * L<edlib|https://github.com/Martinsos/edlib>
Edlib is a lightweight and superfast C/C++ library for sequence
alignment using the edit (Levenshtein) distance between two or more
biological (usually) sequences. It can calculate the edit distance,
find the optimal aligment path and the coordinates (start/end)
locations. It supports multiple alignment modes such as global (NW),
prefix (SHW) and infix (HW). The library does not handle utf8 and its
primary use is to compute edit distances and alignments over small
(255 characters or fewer) alphabets as they occur in bioinformatic
applications.
=item * L<Text::Levenshtein::Edlib|https://metacpan.org/pod/Text::Levenshtein::Edlib>
An XS library that also wraps around the edlib library and returns
edit distances, as well as alignment paths.
=item * L<Text::Levenshtein::XS|https://metacpan.org/pod/Text::Levenshtein::XS>
An XS library that computes edit distances but not alignment paths. See also
its github repository at: L<https://github.com/ugexe/Text--Levenshtein--XS/>)
=item * L<Text::LevenshteinXS|https://metacpan.org/pod/Text::LevenshteinXS>
Yet another XS implementation of Levenshtein distance over strings
(no alignment path).
=back
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