AcePerl
view release on metacpan or search on metacpan
name $name. If successful, it returns the newly-created object.
Otherwise it returns undef and sets $db->error().
$name may contain sprintf()-style patterns. If one of the patterns is
%d (or a variant), Acedb uses a class-specific unique numbering to return
a unique name. For example:
$paper = $db->new(Paper => 'wgb%06d');
The object is created in the database atomically. There is no chance to rollback as there is
in Ace::Object's object editing methods.
See also the Ace::Object->add() and replace() methods.
=head2 list() method
@objects = $db->list(class,pattern,[count,offset]);
@objects = $db->list(-class=>$class,
-name=>$name_pattern,
-count=>$count,
-offset=>$offset);
Ace/Object.pm view on Meta::CPAN
=head2 comment() method
$comment = $object->comment;
This returns the comment attached to an object or object subtree, if
any. Comments are I<Comment> objects and have the interesting
property that a single comment can refer to multiple objects. If
there is no comment attached to the current subtree, this method will
return undef.
Currently you cannot create a new comment in AcePerl or edit an old
one.
=head2 error() method
$error = $object->error;
Returns the error from the previous operation, if any. As in
Ace::error(), this string will only have meaning if the previous
operation returned a result code indicating an error.
DISCLAIMER.txt view on Meta::CPAN
WARRANTY, EXPRESS OR IMPLIED. CSHL MAKES NO REPRESENTATION OR
WARRANTY THAT THE USE OF THIS SOFTWARE WILL NOT INFRINGE ANY PATENT OR
OTHER PROPRIETARY RIGHT.
By downloading this SOFTWARE, your Institution hereby indemnifies CSHL
against any loss, claim, damage or liability, of whatsoever kind or
nature, which may arise from your Institution's respective use,
handling or storage of the SOFTWARE.
If publications result from research using this SOFTWARE, we ask that
CSHL be acknowledged and/or credit be given to CSHL scientists, as
scientifically appropriate.
A. Read the copious documentation
perldoc Ace
B. Review the examples
A few useful examples can be found in the "examples" subdirectory.
Among these is a script called "ace.pl", which implements a text
interface to any local or remote ace database. If you have the Perl
Term::readline module installed, it gives you command-line editing,
completion, and history.
The script "dump_cdna.pl" shows you how to dump out all spliced cDNAs
from wormbase.org. Other dump scripts show similar tricks. You can
use these as templates for doing other biologically interesting
tricks.
There is also family of CGI scripts that run on top of AcePerl to give
a WebAce-like interface to Ace (it is not as feature-full as WebAce,
but it is probably easier to set up and run). This package is now part
README.ACEBROWSER view on Meta::CPAN
$HOST = 'stein.cshl.org';
$PORT = 2005;
$USERNAME = '';
$PASSWORD = '';
In addition to scalar variables, the configuration file is used to set
arrays, hashes and specially-named functions.
If you are only interested in accessing a single database, it is
easiest to modify the default.pm configuration file. To serve
multiple databases, just make a copy of default.pm and edit the copy.
If, for some reason, Acebrowser cannot find its configuration files,
it will generate an internal server error. The location of the
configuration files directory is stored in the module
Ace::Browser::LocalSiteDefs, typically somewhere inside the
"site_perl" subdirectory of the Perl library directory (use "perl -V"
to see where that is). You can find out where Acebrowser expects to
find its configuration files by running the following command:
perl -MAce::Browser::LocalSiteDefs \
-e 'print $Ace::Browser::LocalSiteDefs::SITE_DEFS,"\n"'
To change this value, either reinstall Aceperl or edit
LocalSiteDefs.pm manually.
EDITING THE CONFIGURATION FILE
The settings in the default.pm configuration file distributed with
AcePerl should work with little, if any modification. The following
variables may need to be tweaked:
$ROOT = '/cgi-bin/ace';
README.ACEBROWSER view on Meta::CPAN
Alias /movies/ /usr/local/apache/cgi-bin/ace/
<Location /movies>
SetHandler Perl-script
PerlHandler Apache::Registry
PerlSendHeader On
Options +ExecCGI +Indexes
PerlSetVar AceBrowserConf /usr/local/apache/conf/acebrowser/moviedb.pm
</Location>
Be sure also to edit moviedb.pm $ROOT variable to indicate the correct
location of scripts in URL space:
$ROOT = '/movies';
EXTENDING ACEBROWSER
Acedb is fundamentally object based. In addition to having a name,
each object has a class, such as "Sequence". Acebrowser takes
advantage of this object structure by allowing you to assign one or
acelib/aceclientlib.c view on Meta::CPAN
* I started from a sample code generated by rpcgen on Solaris
* and a first version by Peter Kocab.
* Does not require any ACEDB library code.
*
* Exported functions:
openServer()
closeServer()
askServer()
askServerBinary()
* HISTORY:
* Last edited: Sep 10 19:48 1997 (rd)
* Created: Wed Nov 25 20:02:45 1992 (mieg)
*-------------------------------------------------------------------
*/
/* $Id: aceclientlib.c,v 1.1 2002/11/14 20:00:06 lstein Exp $ */
#include "mystdlib.h"
#define __malloc_h
#include <errno.h>
#include <rpc/rpc.h>
acelib/arraysub.c view on Meta::CPAN
* Jean Thierry-Mieg (CRBM du CNRS, France) mieg@crbm.cnrs-mop.fr
*
* Description:
* Arbitrary length arrays, stacks, associators
* line breaking and all sorts of other goodies
* These functions are declared in array.h
* (part of regular.h - the header for libfree.a)
* Exported functions:
* See Header file: array.h (includes lots of macros)
* HISTORY:
* Last edited: Dec 4 11:12 1998 (fw)
* * Nov 1 16:11 1996 (srk)
* - MEM_DEBUG code clean-up
* (some loose ends crept in from WIN32)
* - int (*order)(void*,void*) prototypes used
* uniformly throughout
* * Jun 5 00:48 1996 (rd)
* * May 2 22:33 1995 (mieg): killed the arrayReport at 20000
otherwise it swamps 50 Mbytes of RAM
* * Jan 21 16:25 1992 (mieg): messcrash in uArrayCreate(size<=0)
* * Dec 17 11:40 1991 (mieg): stackTokeniseTextOn() tokeniser.
acelib/bump.c view on Meta::CPAN
* Richard Durbin (MRC LMB, UK) rd@mrc-lmb.cam.ac.uk, and
* Jean Thierry-Mieg (CRBM du CNRS, France) mieg@kaa.cnrs-mop.fr
*
* Description:
** Bumper (Cambridge traditional folklore)
* Exported functions:
** bumpCreate, bumpDestroy
** bumpItem, bumpText, bumpTest, bumpAdd
** the BUMP structure is defined in wh/bump.h
* HISTORY:
* Last edited: Dec 21 13:58 1998 (fw)
* Created: Thu Aug 20 10:34:55 1992 (mieg)
*-------------------------------------------------------------------
*/
/* $Id: bump.c,v 1.1 2002/11/14 20:00:06 lstein Exp $ */
#include "regular.h"
#include "bump.h"
#include "bump_.h"
acelib/call.c view on Meta::CPAN
*-------------------------------------------------------------------
* This file is part of the ACEDB genome database package, written by
* Richard Durbin (MRC LMB, UK) rd@mrc-lmb.cam.ac.uk, and
* Jean Thierry-Mieg (CRBM du CNRS, France) mieg@kaa.cnrs-mop.fr
*
* Description: provides hooks to optional code, basically a call by
name dispatcher
plus wscripts/ interface
* Exported functions:
* HISTORY:
* Last edited: Nov 19 14:40 1998 (fw)
* * Mar 3 15:51 1996 (rd)
* Created: Mon Oct 3 14:05:37 1994 (rd)
*-------------------------------------------------------------------
*/
/* $Id: call.c,v 1.1 2002/11/14 20:00:06 lstein Exp $ */
#include "acedb.h"
#include "call.h"
#include "mytime.h"
acelib/dict.c view on Meta::CPAN
* Author: Richard Durbin (rd@sanger.ac.uk)
* Copyright (C) J Thierry-Mieg and R Durbin, 1995
*-------------------------------------------------------------------
* This file is part of the ACEDB genome database package, written by
* Richard Durbin (MRC LMB, UK) rd@mrc-lmb.cam.ac.uk, and
* Jean Thierry-Mieg (CRBM du CNRS, France) mieg@kaa.cnrs-mop.fr
*
* Description:
* Exported functions:
* HISTORY:
* Last edited: Sep 16 23:43 1997 (rd)
* Created: Tue Jan 17 17:33:44 1995 (rd)
*-------------------------------------------------------------------
*/
/* $Id: dict.c,v 1.1 2002/11/14 20:00:06 lstein Exp $ */
#include "dict.h"
/************* standard utility from Jean *************/
acelib/filsubs.c view on Meta::CPAN
*-------------------------------------------------------------------
* This file is part of the ACEDB genome database package, written by
* Richard Durbin (MRC LMB, UK) rd@mrc-lmb.cam.ac.uk, and
* Jean Thierry-Mieg (CRBM du CNRS, France) mieg@kaa.cnrs-mop.fr
*
* Description:
* cross platform file system routines
*
* Exported functions:
* HISTORY:
* Last edited: Jan 5 16:36 1999 (fw)
* * Dec 8 10:20 1998 (fw): new function filAge to determine time since
* last modification of file
* * Oct 22 16:17 1998 (edgrif): Replace unsafe strtok with strstr.
* * Oct 15 11:47 1998 (fw): include messSysErrorText in some messges
* * Sep 30 09:37 1998 (edgrif): Replaced my strdup with acedb strnew.
* * Sep 9 14:07 1998 (edgrif): Add filGetFilename routine that will
* return the filename given a pathname
* (NOT the same as the UNIX basename).
* * DON'T KNOW WHO DID THE BELOW..assume Richard Bruskiewich (edgrif)
* - fix root path detection for default drives (in WIN32)
acelib/freeout.c view on Meta::CPAN
* Author: Danielle et jean Thierry-Mieg (mieg@mrc-lmba.cam.ac.uk)
* Copyright (C) J Thierry-Mieg and R Durbin, 1995
*-------------------------------------------------------------------
* This file is part of the ACEDB genome database package, written by
* Richard Durbin (MRC LMB, UK) rd@mrc-lmba.cam.ac.uk, and
* Jean Thierry-Mieg (CRBM du CNRS, France) mieg@frmop11.bitnet
*
* Description:
* Exported functions: see regular.h
* HISTORY:
* Last edited: Sep 11 10:09 1998 (edgrif)
* * Sep 11 09:26 1998 (edgrif): Add messExit function registering.
* * Dec 14 16:47 1995 (mieg)
* Created: Thu Dec 7 22:22:33 1995 (mieg)
*-------------------------------------------------------------------
*/
/* $Id: freeout.c,v 1.1 2002/11/14 20:00:06 lstein Exp $ */
#include "freeout.h"
#include <ctype.h>
acelib/freesubs.c view on Meta::CPAN
* Author: Richard Durbin (rd@mrc-lmb.cam.ac.uk)
* Copyright (C) J Thierry-Mieg and R Durbin, 1991
*-------------------------------------------------------------------
* This file is part of the ACEDB genome database package, written by
* Richard Durbin (MRC LMB, UK) rd@mrc-lmb.cam.ac.uk, and
* Jean Thierry-Mieg (CRBM du CNRS, France) mieg@kaa.cnrs-mop.fr
*
* Description: free format input - record based
* Exported functions: lots - see regular.h
* HISTORY:
* Last edited: Dec 4 11:20 1998 (fw)
* * Dec 3 14:46 1998 (edgrif): Insert version macros for libfree.
* freecard ignores "\r" and "\n" under WIN32
* * Sep 30 14:19 1998 (edgrif)
* * Nov 27 12:30 1995 (mieg): freecard no longer stips \, freeword does
* also i added freeunprotect
* Created: Sun Oct 27 18:16:01 1991 (rd)
*-------------------------------------------------------------------
*/
/* $Id: freesubs.c,v 1.1 2002/11/14 20:00:06 lstein Exp $ */
acelib/heap.c view on Meta::CPAN
*-------------------------------------------------------------------
* This file is part of the ACEDB genome database package, written by
* Richard Durbin (MRC LMB, UK) rd@mrc-lmb.cam.ac.uk, and
* Jean Thierry-Mieg (CRBM du CNRS, France) mieg@kaa.cnrs-mop.fr
*
* Description: supports maximising heaps with a float score.
* Exported functions: heapCreate, heapDestroy,
heapInsert, heapExtract
keySetAlphaHeap
* HISTORY:
* Last edited: Jul 8 15:05 1998 (il)
* * Nov 12 20:12 1991 (mieg): i add here my own keySetAlphaHeap
it is probably equivalent to your code, i did not verify, but
our 2 files were in w1, although i never saw your file before today,
i must have killed it by mistake.
* Created: Sat Oct 12 20:02:41 1991 (rd)
*-------------------------------------------------------------------
*/
/* $Id: heap.c,v 1.1 2002/11/14 20:00:06 lstein Exp $ */
acelib/helpsubs.c view on Meta::CPAN
* Copyright (C) J Thierry-Mieg and R Durbin, 1998
*-------------------------------------------------------------------
* This file is part of the ACEDB genome database package, written by
* Richard Durbin (MRC LMB, UK) rd@sanger.ac.uk, and
* Jean Thierry-Mieg (CRBM du CNRS, France) mieg@kaa.cnrs-mop.fr
*
* SCCS: %W% %G%
* Description: controls the help system, provides HTML parsing
* Exported functions:
* HISTORY:
* Last edited: Dec 4 14:30 1998 (fw)
* * Oct 12 12:27 1998 (fw): checkSubject now case-insensitive
* * Oct 8 17:23 1998 (fw): removed warning, in case that
an open-list tag (e.g. <UL> was directly followed by a close-list
tag (e.g. </UL>). The warning tried to enforce that
every type of list only has a certain type of items.
* * Oct 8 11:36 1998 (fw): helpSubjectGetFilename takes over logic
from readHelpfile to locate the file containing the
help for a particular subject
* Created: Tue Aug 18 16:11:07 1998 (fw)
*-------------------------------------------------------------------
acelib/liste.c view on Meta::CPAN
i.e. it maintains a list, not a set.
* Exported functions:
Liste listeCreate (STORE_HANDLE hh) ;
listeDestroy(_ll)
listeMax(_ll)
int listeFind (Liste liste, void *vp) ;
int listeAdd (Liste liste, void *vp) ;
void listeRemove (Liste liste, void *vp, int i) ;
* HISTORY:
* Last edited: Nov 23 11:21 1998 (fw)
* Created: oct 97 (mieg)
*-------------------------------------------------------------------
*/
/* $Id: liste.c,v 1.1 2002/11/14 20:00:06 lstein Exp $ */
#include "liste.h"
/* A liste is a list of void*
* It is less costly than an associator if
acelib/memsubs.c view on Meta::CPAN
* Author: Richard Durbin (rd@sanger.ac.uk)
* Copyright (C) J Thierry-Mieg and R Durbin, 1998
*-------------------------------------------------------------------
* This file is part of the ACEDB genome database package, written by
* Richard Durbin (MRC LMB, UK) rd@sanger.ac.uk, and
* Jean Thierry-Mieg (CRBM du CNRS, France) mieg@kaa.cnrs-mop.fr
*
* Description:
* Exported functions:
* HISTORY:
* Last edited: Dec 4 11:24 1998 (fw)
* Created: Thu Aug 20 16:54:55 1998 (rd)
*-------------------------------------------------------------------
*/
/* define MALLOC_CHECK here to check mallocs - also in regular.h */
#include "regular.h"
#if defined(NEXT) || defined(HP) || defined(MACINTOSH)
extern void* malloc(mysize_t size) ;
acelib/menu.c view on Meta::CPAN
* Author: Jean Thierry-Mieg (mieg@mrc-lmb.cam.ac.uk)
* Copyright (C) J Thierry-Mieg and R Durbin, 1992-1995
*-------------------------------------------------------------------
* This file is part of the ACEDB genome database package, written by
* Richard Durbin (MRC LMB, UK) rd@mrc-lmb.cam.ac.uk, and
* Jean Thierry-Mieg (CRBM du CNRS, France) mieg@kaa.cnrs-mop.fr
*
* Description:
* Exported functions: all in menu.h
* HISTORY:
* Last edited: Dec 4 11:28 1998 (fw)
* * Jan 9 22:52 1995 (rd): complete replacement for new menu package
* * Jul 23 21:53 1992 (rd): big change because of new menus
must have a separate MENUOPT* for each combination of entries
* Created: Mon Jun 15 14:43:55 1992 (mieg)
*-------------------------------------------------------------------
*/
/* $Id: menu.c,v 1.1 2002/11/14 20:00:06 lstein Exp $ */
#include "regular.h"
acelib/messubs.c view on Meta::CPAN
* This file is part of the ACEDB genome database package, written by
* Richard Durbin (MRC LMB, UK) rd@mrc-lmb.cam.ac.uk, and
* Jean Thierry-Mieg (CRBM du CNRS, France) mieg@kaa.cnrs-mop.fr
*
* Description: low level: encapsulates vararg messages, *printf,
* crash handler,
*
* Exported functions: see regular.h
*
* HISTORY:
* Last edited: Nov 27 15:36 1998 (fw)
* * Nov 19 13:26 1998 (edgrif): Removed the test for errorCount and messQuery
* in messerror, really the wrong place.
* * Oct 22 15:26 1998 (edgrif): Replaced strdup's with strnew.
* * Oct 21 15:07 1998 (edgrif): Removed messErrorCount stuff from graphcon.c
* and added to messerror (still not perfect), this was a new.
* bug in the message system.
* * Sep 24 16:47 1998 (edgrif): Remove references to ACEDB in messages,
* change messExit prefix to "EXIT: "
* * Sep 22 14:35 1998 (edgrif): Correct errors in buffer usage by message
* outputting routines and message formatting routines.
acelib/randsubs.c view on Meta::CPAN
* Author: Jean Thierry-Mieg (mieg@mrc-lmb.cam.ac.uk)
* Copyright (C) J Thierry-Mieg and R Durbin, 1992
*-------------------------------------------------------------------
* This file is part of the ACEDB genome database package, written by
* Richard Durbin (MRC LMB, UK) rd@mrc-lmb.cam.ac.uk, and
* Jean Thierry-Mieg (CRBM du CNRS, France) mieg@kaa.cnrs-mop.fr
*
* Description:
* Exported functions:
* HISTORY:
* Last edited: Dec 4 15:06 1998 (fw)
* Created: Mon Jun 15 14:44:56 1992 (mieg)
*-------------------------------------------------------------------
*/
/* $Id: randsubs.c,v 1.1 2002/11/14 20:00:06 lstein Exp $ */
#ifdef ALPHA
int random(void); /* in libc.a */
#endif /* ALPHA */
acelib/texthelp.c view on Meta::CPAN
* Richard Durbin (MRC LMB, UK) rd@mrc-lmb.cam.ac.uk, and
* Jean Thierry-Mieg (CRBM du CNRS, France) mieg@kaa.cnrs-mop.fr
*
* Description:
contains contains the code to display an HTML page as plain text
Basic formatting is observed, but images and links are stripped.
* Exported functions:
** helpPrint(char *helpFilename);
* HISTORY:
* Last edited: Dec 4 14:33 1998 (fw)
* * Oct 8 16:01 1998 (fw): removed the declaration of
helpOn and help for #define MACINTOSH
* * Aug 20 16:10 1998 (rd): removed refernces to old help-system
* * Aug 18 17:17 1998 (fw): help-system split into
w1/helpsubs.c (helpDir, HTML stuff etc).
w1/texthelp.c (non-graphical help for tace)
w2/graphhelp.c (graphical help for xace,image etc.)
* ----------------------------------------------------------------------
* ---- major rework, these revision don't necessarily
* ---- affect code still left in this file
acelib/timesubs.c view on Meta::CPAN
* Jean Thierry-Mieg (CRBM du CNRS, France) mieg@kaa.cnrs-mop.fr
*
* Description: functions to handle times/dates
* mieg, mars 94: timeParse/timeShow
this pair of functions is to be used in conjunction
with the _DateType fundamental type which can
now be used in the same way as _Int _Float in models.wrm
* HISTORY:
* Last edited: Nov 27 13:19 1998 (fw)
* * Jul 9 17:23 1998 (fw): added timeComparison() function for < , = and > operators
* * Jul 8 15:49 1998 (fw): added timeDiff functions for mins,hours,months,years
as required by the new AQL date-functions
* * Jan 29 22:31 1995 (rd): allow "today" like "now", for day only
* * Nov 13 19:04 1994 (rd): allow date abbreviations, and rename
consistently, and removed timeStamp, dateStamp
* * Jun 21 17:12 1992 (mieg): changed : to _ in time stamped
: was preventing the file chooser from reading in a dump file
* * Jan 20 10:46 1992 (mieg): Fixed timeStamp, dateStamp
and removed everything else with an ifdef
acelib/wh/aceclient.h view on Meta::CPAN
/* Last edited: Jan 19 18:10 1996 (mieg) */
#ifndef _ACECLIENT_
#define _ACECLIENT_
/* $Id: aceclient.h,v 1.1 2002/11/14 20:00:06 lstein Exp $ */
#define DEFAULT_PORT 0x20000101
#define ACE_UNRECOGNIZED 100
#define ACE_OUTOFCONTEXT 200
#define ACE_INVALID 300
acelib/wh/acedb.h view on Meta::CPAN
* Copyright (C) J Thierry-Mieg and R Durbin, 1991
*-------------------------------------------------------------------
* This file is part of the ACEDB genome database package, written by
* Richard Durbin (MRC LMB, UK) rd@mrc-lmb.cam.ac.uk, and
* Jean Thierry-Mieg (CRBM du CNRS, France) mieg@kaa.cnrs-mop.fr
*
* Description: general include for any acedb code
* can only declare general stuff,
* i.e. not graph-specific things
* HISTORY:
* Last edited: Dec 17 15:59 1998 (fw)
* * Nov 18 17:00 1998 (fw): added decl for mainActivityRegister stuff
* * Nov 18 16:59 1998 (fw): moved pickDraw, getPickArgs to main.h
* as they are for graphical versions
* * Oct 22 11:43 1998 (edgrif): Add dec. of pickDraw.
* * Sep 17 09:43 1998 (edgrif): Add declaration of pickGetArgs function.
* * Oct 21 14:01 1991 (mieg): added overflow protection in KEYMAKE
* Created: Mon Oct 21 14:01:19 1991 (mieg)
*-------------------------------------------------------------------
*/
acelib/wh/aceversion.h view on Meta::CPAN
*-------------------------------------------------------------------
* This file is part of the ACEDB genome database package, written by
* Richard Durbin (MRC LMB, UK) rd@mrc-lmba.cam.ac.uk, and
* Jean Thierry-Mieg (CRBM du CNRS, France) mieg@crbm1.cnusc.fr
*
* Description: Declares functions in the new acedb_version module.
* These functions allow the retrieval of various parts
* of the current acedb version number or string.
* Exported functions: See descriptions below.
* HISTORY:
* Last edited: Dec 3 14:58 1998 (edgrif)
* * Dec 3 14:39 1998 (edgrif): Changed the interface to fit in with
* libace.
* Created: Wed Apr 29 13:46:41 1998 (edgrif)
*-------------------------------------------------------------------
*/
#ifndef ACE_VERSION_H
#define ACE_VERSION_H
acelib/wh/array.h view on Meta::CPAN
* Richard Durbin (Sanger Centre, UK) rd@sanger.ac.uk, and
* Jean Thierry-Mieg (CRBM du CNRS, France) mieg@crbm.cnrs-mop.fr
*
* Description: header for arraysub.c
* NOT to be included by the user, included by regular.h
* Exported functions:
* the Array type and associated functions
* the Stack type and associated functions
* the Associator functions
* HISTORY:
* Last edited: Dec 4 11:03 1998 (fw)
* Created: Fri Dec 4 11:01:35 1998 (fw)
*-------------------------------------------------------------------
*/
#ifndef DEF_ARRAY_H
#define DEF_ARRAY_H
unsigned int stackused (void) ;
/************* Array package ********/
acelib/wh/bump.h view on Meta::CPAN
* Author: Jean Thierry-Mieg (mieg@mrc-lmb.cam.ac.uk)
* Copyright (C) J Thierry-Mieg and R Durbin, 1992
*-------------------------------------------------------------------
* This file is part of the ACEDB genome database package, written by
* Richard Durbin (MRC LMB, UK) rd@mrc-lmb.cam.ac.uk, and
* Jean Thierry-Mieg (CRBM du CNRS, France) mieg@kaa.cnrs-mop.fr
*
* Description:
* Exported functions:
* HISTORY:
* Last edited: Dec 17 16:05 1998 (fw)
* Created: Thu Aug 20 10:42:03 1992 (mieg)
*-------------------------------------------------------------------
*/
/* $Id: bump.h,v 1.1 2002/11/14 20:00:06 lstein Exp $ */
#ifndef DEF_BUMP_H
#define DEF_BUMP_H
/* forward declaration of opaque type */
acelib/wh/bump_.h view on Meta::CPAN
* This file is part of the ACEDB genome database package, written by
* Richard Durbin (Sanger Centre, UK) rd@sanger.ac.uk, and
* Jean Thierry-Mieg (CRBM du CNRS, France) mieg@crbm.cnrs-mop.fr
*
* Description: private header for the internals of the BUMP-package
* Exported functions: none
* completion of the BUMP structure to allow
* the inside if the BUMP-package to access the members
* of the structure.
* HISTORY:
* Last edited: Dec 17 16:20 1998 (fw)
* Created: Thu Dec 17 16:17:32 1998 (fw)
*-------------------------------------------------------------------
*/
#ifndef DEF_BUMP__H
#define DEF_BUMP__H
#include "bump.h" /* include public header */
acelib/wh/call.h view on Meta::CPAN
* Author: Richard Durbin (rd@sanger.ac.uk)
* Copyright (C) J Thierry-Mieg and R Durbin, 1994
*-------------------------------------------------------------------
* This file is part of the ACEDB genome database package, written by
* Richard Durbin (MRC LMB, UK) rd@mrc-lmb.cam.ac.uk, and
* Jean Thierry-Mieg (CRBM du CNRS, France) mieg@kaa.cnrs-mop.fr
*
* Description: Header file for message system to allow calls by name
* Exported functions:
* HISTORY:
* Last edited: Oct 19 11:06 1998 (fw)
* * Nov 3 16:15 1994 (mieg): callCdScript, first cd to establish
the pwd of the command, needed for ghostview etc.
* Created: Mon Oct 3 14:57:16 1994 (rd)
*-------------------------------------------------------------------
*/
/* $Id: call.h,v 1.1 2002/11/14 20:00:06 lstein Exp $ */
#ifndef DEF_CALL_H
acelib/wh/dict.h view on Meta::CPAN
* Author: Richard Durbin (rd@sanger.ac.uk)
* Copyright (C) J Thierry-Mieg and R Durbin, 1995
*-------------------------------------------------------------------
* This file is part of the ACEDB genome database package, written by
* Richard Durbin (MRC LMB, UK) rd@mrc-lmb.cam.ac.uk, and
* Jean Thierry-Mieg (CRBM du CNRS, France) mieg@kaa.cnrs-mop.fr
*
* Description: public header for cut-out lex package in dict.c
* Exported functions:
* HISTORY:
* Last edited: Dec 4 14:50 1998 (fw)
* Created: Tue Jan 17 17:34:44 1995 (rd)
*-------------------------------------------------------------------
*/
/* @(#)dict.h 1.4 9/16/97 */
#ifndef DICT_H
#define DICT_H
#include "regular.h"
( run in 1.427 second using v1.01-cache-2.11-cpan-de7293f3b23 )