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    executables that align against small and large index formats
    respectively.

  bowtie2_build
     Alien::SeqAlignment::bowtie2->bowtie2_build     (list of arguments)
     Alien::SeqAlignment::bowtie2->bowtie2_build_s   (list of arguments)
     Alien::SeqAlignment::bowtie2->bowtie2_build_l   (list of arguments)

    Returns the command name for the python application bowtie2-build,that
    builds the database of the reference sequences. bowtie2-build can
    generate either small or large indexes. The wrapper will decide which
    based on the length of the input genome. If the reference does not
    exceed 4 billion characters but a large index is preferred, the user can
    specify --large-index to force bowtie2-build to build a large index
    instead. The methods Alien::SeqAlignment::bowtie2->bowtie2_build_s and
    Alien::SeqAlignment::bowtie2->bowtie2_build_l return the names of the
    *binary* executables that bowtie2-build wraps over.

  bowtie2_inspect
     Alien::SeqAlignment::bowtie2->bowtie2_inspect    (list of arguments)
     Alien::SeqAlignment::bowtie2->bowtie2_inspect_s  (list of arguments)

lib/Alien/SeqAlignment/bowtie2.pm  view on Meta::CPAN

=head2 bowtie2_build

 Alien::SeqAlignment::bowtie2->bowtie2_build     (list of arguments)
 Alien::SeqAlignment::bowtie2->bowtie2_build_s   (list of arguments)
 Alien::SeqAlignment::bowtie2->bowtie2_build_l   (list of arguments)
  
Returns the command name for the python application bowtie2-build,that builds 
the database of the reference sequences. bowtie2-build can generate either 
small or large indexes. The wrapper will decide which based on the length of 
the input genome. If the reference does not exceed 4 billion characters but 
a large index is preferred, the user can specify --large-index to force 
bowtie2-build to build a large index instead.
The methods Alien::SeqAlignment::bowtie2->bowtie2_build_s and 
Alien::SeqAlignment::bowtie2->bowtie2_build_l return the names of the *binary*
executables that bowtie2-build wraps over.


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