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lib/BioX/Workflow/Plugin/Drake.pm  view on Meta::CPAN

    print $fh "#!/bin/bash\n\n";

    foreach my $sample (@{$self->samples}){
        print $fh <<EOF;
drake --vars "SAMPLE=$sample" --workflow workflow.drake
EOF
    }

    close $fh;

    chmod 0777, 'run-workflow.sh';

    $self->samples(["\$SAMPLE"]);
};

=head3 write_process

Fill in the template with the process

Ensure INPUT/OUTPUT exist