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install_dependencies.sh  view on Meta::CPAN

fi

# Create prodigal symlink
cd $PRODIGAL_DIR

if [ -e "$PRODIGAL_DIR/prodigal" ]; then
  echo "Prodiagl already exists in $PRODIGAL_DIR"
else
  echo "Creating prodigal symlink"
  cp $PRODIGAL_DOWNLOAD_PATH $PRODIGAL_DIR
  chmod u+x "${PRODIGAL_DIR}/${PRODIGAL_DOWNLOAD_FILENAME}"
  ln -s "${PRODIGAL_DIR}/${PRODIGAL_DOWNLOAD_FILENAME}" ${PRODIGAL_DIR}/prodigal
fi

# Add things to PATH
update_path () {
  new_dir=$1
  if [[ ! "$PATH" =~ (^|:)"${new_dir}"(:|$) ]]; then
    export PATH=${new_dir}:${PATH}
  fi
}