App-Egaz
view release on metacpan or search on metacpan
&& brew install wang-q/tap/tsv-utils \
&& rm -fr $(brew --cache)/*
# HOME bin
RUN true \
&& mkdir -p /home/linuxbrew/bin \
&& curl -L https://github.com/wang-q/ubuntu/releases/download/20190906/jkbin-egaz-ubuntu-1404-2011.tar.gz | \
tar -xvzf - \
&& mv x86_64/* /home/linuxbrew/bin/ \
&& curl -O http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/faToTwoBit \
&& chmod +x faToTwoBit \
&& mv faToTwoBit /home/linuxbrew/bin/
# RepeatMasker
# https://stackoverflow.com/questions/57629010/linuxbrew-curl-certificate-issue
RUN true \
&& export HOMEBREW_NO_ANALYTICS=1 \
&& export HOMEBREW_NO_AUTO_UPDATE=1 \
&& export HOMEBREW_CURLRC=1 \
&& echo "--ciphers DEFAULT@SECLEVEL=1" >> $HOME/.curlrc \
&& brew install brewsci/bio/trf \
( run in 0.230 second using v1.01-cache-2.11-cpan-496ff517765 )