App-Anchr

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# Escherichia virus Lambda

Project
[SRP055199](https://trace.ncbi.nlm.nih.gov/Traces/sra/?study=SRP055199)

## lambda: download

* Reference genome

    * Strain: Escherichia virus Lambda (viruses)
    * Taxid: [10710](https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=10710&lvl=3&lin=f&keep=1&srchmode=1&unlock)
    * RefSeq assembly accession:
      [GCF_000840245.1](ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/840/245/GCF_000840245.1_ViralProj14204/GCF_000840245.1_ViralProj14204_assembly_report.txt)
    * Proportion of paralogs (> 1000 bp): 0.0

```bash
mkdir -p ~/data/anchr/lambda/1_genome
cd ~/data/anchr/lambda/1_genome

aria2c -x 9 -s 3 -c ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/840/245/GCF_000840245.1_ViralProj14204/GCF_000840245.1_ViralProj14204_genomic.fna.gz

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# Legionella pneumophila subsp. pneumophila ATCC 33152D-5; Philadelphia-1, 嗜肺军团菌

Project
[SRP040661](https://trace.ncbi.nlm.nih.gov/Traces/sra/?study=SRP040661)

## Lpne: download

* Reference genome

    * Strain: Legionella pneumophila subsp. pneumophila str. Philadelphia 1
    * Taxid: [272624](https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=272624&lvl=3&lin=f&keep=1&srchmode=1&unlock)
    * RefSeq assembly accession:
      [GCF_000008485.1](ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/485/GCF_000008485.1_ASM848v1/GCF_000008485.1_ASM848v1_assembly_report.txt)
    * Proportion of paralogs (> 1000 bp): 0.0264

```bash
mkdir -p ~/data/anchr/Lpne/1_genome
cd ~/data/anchr/Lpne/1_genome

aria2c -x 9 -s 3 -c ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/485/GCF_000008485.1_ASM848v1/GCF_000008485.1_ASM848v1_genomic.fna.gz

doc/bacteria_2_3.md  view on Meta::CPAN

# Campylobacter jejuni subsp. jejuni ATCC 700819, 空肠弯曲杆菌

Project
[SRP040661](https://trace.ncbi.nlm.nih.gov/Traces/sra/?study=SRP040661)

## Cjej: download

* Reference genome

    * Strain: Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819
    * Taxid: [192222](https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=192222&lvl=3&lin=f&keep=1&srchmode=1&unlock)
    * RefSeq assembly accession:
      [GCF_000009085.1](ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/085/GCF_000009085.1_ASM908v1/GCF_000009085.1_ASM908v1_assembly_report.txt)
    * Proportion of paralogs (> 1000 bp): 0.0196

```bash
mkdir -p ~/data/anchr/Cjej/1_genome
cd ~/data/anchr/Cjej/1_genome

aria2c -x 9 -s 3 -c ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/009/085/GCF_000009085.1_ASM908v1/GCF_000009085.1_ASM908v1_genomic.fna.gz



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