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  glbalignsp.o glbalignspn.o glbalignss.o glbalndimer.o globals.o globalslinux.o \
  globalsosx.o globalsother.o globalswin32.o gonnet.o henikoffweight.o \
  henikoffweightpb.o html.o hydro.o intmath.o local.o main.o makerootmsa.o \
  makerootmsab.o maketree.o mhack.o mpam200.o msa.o msa2.o msadistkimura.o msf.o \
  muscle.o muscleout.o nucmx.o nwdasimple.o nwdasimple2.o nwdasmall.o nwrec.o \
  nwsmall.o objscore.o objscore2.o objscoreda.o onexception.o options.o \
  outweights.o pam200mafft.o params.o phy.o phy2.o phy3.o phy4.o phyfromclust.o \
  phyfromfile.o physeq.o phytofile.o posgap.o ppscore.o profdb.o profile.o \
  profilefrommsa.o progalign.o progress.o progressivealign.o pwpath.o readmx.o \
  realigndiffs.o realigndiffse.o refine.o refinehoriz.o refinesubfams.o \
  refinetree.o refinetreee.o refinevert.o refinew.o savebest.o scoredist.o \
  scoregaps.o scorehistory.o scorepp.o seq.o seqvect.o setblosumweights.o \
  setgscweights.o setnewhandler.o spfast.o sptest.o stabilize.o subfam.o \
  subfams.o sw.o termgaps.o textfile.o threewaywt.o tomhydro.o traceback.o \
  tracebackopt.o tracebacksw.o treefrommsa.o typetostr.o upgma2.o usage.o \
  validateids.o vtml2.o writescorefile.o

.SUFFIXES: .cpp .o

.cpp.o:
	@echo Compiling $<