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config.yml  view on Meta::CPAN

---
global:
    - indir: data/raw
    - outdir: data/processed
    - file_rule: (.*)csv$
    - plugins:
        - FileExists
rules:
    - backup:
        local:
            - wait: 0
        process: cp {$self->indir}/{$sample}.csv {$self->outdir}/{$sample}.csv
    - grep_VARA:
        process: |
            echo "Working on {$self->{indir}}/{$sample.csv}"
            grep -i "VARA" {$self->indir}/{$sample}.csv >> {$self->outdir}/{$sample}.grep_VARA.csv
    - grep_VARB:
        process: |
            grep -i "VARB" {$self->indir}/{$sample}.grep_VARA.csv >> {$self->outdir}/{$sample}.grep_VARA.grep_VARB.csv