BioPerl-Run

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t/Tools/Run/RemoteBlast.t  view on Meta::CPAN

                    print "score is ", $hsp->bits, "\n";
                }
            }
        }
        is($count, 3, 'HSPs returned');
    }
    elsif ($attempt > $max_attempts) {
        # have a test fail here (there should not be repeated failed attempts to
        # get reports)
        ok(0,'Exceeded maximum attempts on server to retrieve report');
        diag("Timeout, did not return report after ".($attempt - 1)." attempts");
        skip('Remote server timeout problems', 2);
    }
    else {
        # have a test fail here (whatever is returned should be eval as true and
        # be a SearchIO)
        ok(0,"Other problem on remote server, no report returned: $rc");
        skip('Possible remote server problems', 2);
    }
}

t/Tools/Run/RemoteBlast.t  view on Meta::CPAN

                    print "score is ", $hsp->bits, "\n";
                }
            }
        }
        is($count, 3, 'HSPs returned');
    }
    elsif ($attempt > $max_attempts) {
        # have a test fail here (there should not be repeated failed attempts to
        # get reports)
        ok(0,'Exceeded maximum attempts on server to retrieve report');
        diag("Timeout, did not return report after ".($attempt - 1)." attempts");
        skip('Remote server timeout problems', 2);
    }
    else {
        # have a test fail here (whatever is returned should be eval as true and
        # be a SearchIO)
        ok(0,"Other problem on remote server, no report returned: $rc");
        skip('Possible remote server problems', 2);
    }
}

t/Tools/Run/RemoteBlast.t  view on Meta::CPAN

            while ( my $hit = $result->next_hit ) {
                $count++;
            }
        }
        is($count, 3, 'HSPs returned');
    }
    elsif ($attempt > $max_attempts) {
        # have a test fail here (there should not be repeated failed attempts to
        # get reports)
        ok(0,'Exceeded maximum attempts on server to retrieve report');
        diag("Timeout, did not return report after ".($attempt - 1)." attempts");
        skip('Remote server timeout problems', 2);
    }
    else {
        # have a test fail here (whatever is returned should be eval as true and
        # be a SearchIO)
        ok(0,"Other problem on remote server, no report returned: $rc");
        skip('Possible remote server problems', 2);
    }
}

t/Tools/Run/RemoteBlast_rpsblast.t  view on Meta::CPAN

                    print "score is ", $hsp->bits, "\n";
                }
            }
        }
        cmp_ok($count, '>=', 45, 'HSPs returned');
    }
    elsif ($attempt > 10) {
        # have a test fail here (there should not be repeated failed attempts to
        # get reports)
        ok(0,'Exceeded maximum attempts on server to retrieve report');
        diag("Timeout, did not return report after ".($attempt - 1)." attempts");
        skip('Remote server timeout problems', 2);
    }
    else {
        # have a test fail here (whatever is returned should be eval as true and
        # be a SearchIO)
        ok(0,"Other problem on remote server, no report returned: $rc");
        skip('Possible remote server problems', 2);
    }
}