ABI

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Build.PL  view on Meta::CPAN

use warnings;
use Module::Build;
use Module::Build::Compat;

my $build = Module::Build->new(
	module_name        => 'ABI',
	license            => 'perl',
	dist_author	=> 'Malay <malay@bioinformatics.org>',
	dist_version_from => 'ABI.pm',
	build_requires =>{
		'Test::More' =>0,
	},
	add_to_cleanup => ['ABI-*'],
	create_makefile_pl => 'traditional',
	
);

$build->create_build_script();

Module::Build::Compat->create_makefile_pl('traditional', $build);

Changes  view on Meta::CPAN

#$Id: Changes,v 1.1.1.1.2.2 2006/11/20 03:18:12 malay Exp $

Revision history for Perl extension ABI.

1.0  Sat Nov  18  04:22:53 2006
	- Changed to Module::Build system
	- Added test data
	- Changed to Test::More
	- Access to user modified sequence
	- Access to user modified basecalls
	

0.01  Thu May  2 04:22:53 2002
	- original version; created by h2xs 1.21 with options
		-XA -n ABI

META.yml  view on Meta::CPAN

  - 'Malay <malay@bioinformatics.org>'
abstract: |-
  Perl module to parse chromatogram files generated by
  Applied Biosystems (ABI) automated DNA sequencing machine.
  by Malay K Basu (malay@bioinformatics.org); source code available at:
  http://search.cpan.org/~malay
license: perl
resources:
  license: http://dev.perl.org/licenses/
build_requires:
  Test::More: 0
generated_by: Module::Build version 0.2805
meta-spec:
  url: http://module-build.sourceforge.net/META-spec-v1.2.html
  version: 1.2

Makefile.PL  view on Meta::CPAN

# Note: this file was auto-generated by Module::Build::Compat version 0.03
use ExtUtils::MakeMaker;
WriteMakefile
(
          'PL_FILES' => {},
          'INSTALLDIRS' => 'site',
          'NAME' => 'ABI',
          'EXE_FILES' => [],
          'VERSION_FROM' => 'ABI.pm',
          'PREREQ_PM' => {
                           'Test::More' => 0
                         }
        )
;

README  view on Meta::CPAN

 - or -
 
  perl Build.PL
  ./Build
  ./Build test
  ./Build install

DEPENDENCIES

This module requires Test::More

COPYRIGHT AND LICENCE

Copyright (C) 2002,2006 Malay Kumar Basu <malay@bioinformatics.org>

This module is distributed under Perl artistic license. See "License" file
for details.

t/test.t  view on Meta::CPAN

# Before `make install' is performed this script should be runnable with
# `make test'. After `make install' it should work as `perl test.pl'
#########################
# change 'tests => 1' to 'tests => last_test_to_print'
#use FindBin;
#use lib "$FindBin::Bin/..";
use Test::More qw(no_plan);

#BEGIN { plan tests => 1 };
require_ok("ABI");
my $abi = ABI->new("t/TEST_modified.ab1");
isa_ok( $abi, "ABI" );
my @base_calls = $abi->get_base_calls;

#print STDERR "@base_calls";
my @b_calls =
  qw(20 33 46 56 67 82 89 102 111 124 136 151 163 174 185 192 204 215

t/test.t  view on Meta::CPAN

$seq =~ s/\s//g;

is ($seq,$abi->get_corrected_sequence);

#print STDERR "\n", $abi->{_index},"\n";
#print STDERR "\n", $abi->{_seq_length_corrected},"\n";
#print "@array", "\n";

#ok(1); # If we made it this far, we're ok.
#########################
# Insert your test code below, the Test module is use()ed here so read
# its man page ( perldoc Test ) for help writing this test script.