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utils/datasetCreator/fromMySQL/dbToTab.pl  view on Meta::CPAN

#converts a mysql database to tab seperated readable by LBD
#command is of the form:
#`mysql <DB_NAME> -e "SELECT * FROM N_11 INTO OUTFILE '<OUTPUT_FILE>' FIELDS TERMINATED BY '\t' OPTIONALLY ENCLOSED BY '\"' LINES TERMINATED BY '\n';"`
#
# the following line is an example using a database with cui co-occurrence 
# counts from 1980 to 1984 with a window size of 1. The mysql database is 
# called 1980_1984_window1, and the output matrix file is called 
# 1980_1984_window1_data.txt
`mysql 1980_1984_window1 -e "SELECT * FROM N_11 INTO OUTFILE '1980_1984_window1_data.txt' FIELDS TERMINATED BY '\t' OPTIONALLY ENCLOSED BY '\"' LINES TERMINATED BY '\n';"`;

utils/runDiscovery.pl  view on Meta::CPAN

=head1 SYNOPSIS

This utility takes an lbd configuration file and outputs the results
of lbd

=head1 USAGE

Usage: umls-assocation.pl [OPTIONS] LBD_CONFIG_FILE

=head1 INPUT

=head2 LBD_CONFIG_FILE

Configuration file specifying the parameters of LBD. 
See '../config/lbd' for an example

=head1 OPTIONS

Optional command line arguements

utils/runDiscovery.pl  view on Meta::CPAN

to specify each time.

=head3 --debug

enter debug mode

=head3 --version

display the version number

=head1 OUTPUT

A file containing the results of LBD

=head1 SYSTEM REQUIREMENTS

=over

=item * Perl (version 5.16.5 or better) - http://www.perl.org

=item * UMLS::Interface - http://search.cpan.org/dist/UMLS-Interface