Encode-Guess-Educated
view release on metacpan or search on metacpan
t/data/good/11357122.utf8 view on Meta::CPAN
[189]Top of page
§3§ Methods §3§
§4§ Protein purification §4§
AChBP was cloned into expression vector pPIC9 (without residue Leu 1)
and overexpressed in yeast, Pichia pastoris GS115, according to the
Invitrogen manual. After 4 days of induction the medium was collected,
concentrated and dialysed against standard buffer (20 mM TrisâHCl
buffer (pH 8.0), 150 mM NaCl and 0.02% (w/v) NaN[3]). The protein was
purified by anion exchange (Poros50 HQ, MonoQ), and gel filtration
(Superdex 200). It was dialysed against 50 mM HEPES buffer (pH 7.0)
with 0.02% NaN[3] and concentrated to approx 20 mg ml^-1. N-terminal
sequencing revealed that part of the pPIC9-encoded signal sequence is
retained, before residue 2 (sequence EAEAYVEF). The experimental
relative molecular mass was 26,544 (MALDI), approx 2K more than the
calculated mass based on the sequence (24,649), owing to glycosylation
at position Asn 66, as confirmed by deglycosylation experiments (data
not shown).
§4§ Crystallization §4§
We grew the crystals at room temperature using the hanging-drop vapour
diffusion technique. All drops contained 2 micro l of protein
(10 mg ml^-1) and 2 micro l of reservoir solution (9â11% (w/v) PEG
4000, 100 mM HEPES (pH 7.0), 50â200 mM CaCl[2] and 0.02% NaN[3]).
Depending on the batch of protein and the CaCl[2] concentration, we
obtained three crystal forms. Orthorhombic and monoclinic crystals
appeared under high CaCl[2] concentration and were frequently twinned.
The orthorhombic crystals (P2[1]2[1]2[1]) have the following cell
constants: a = 120.6 Ã
, b = 137.0 Ã
, c = 161.5 Ã
, with two pentamer
molecules per asymmetric unit (asu). The monoclinic crystals (P2[1])
are very similar in morphology to the orthorhombic ones, but gave lower
resolution data ( approx 3.3 Ã
), with the following cell constants: a =
121.1 Ã
, b = 162.1 Ã
, c = 139.4 Ã
, beta = 90.13°, and four pentamers
per asu. The tetragonal crystal form (P4[2]2[1]2) was obtained from a
solution containing 11.5 (w/v) PEG 4000, 100 mM HEPES (pH 7.0), 150 mM
CaCl[2] and 0.02% (w/v) NaN[3]. They have the following cell constants:
a = b = 141.66 Ã
, c = 120.83 Ã
and one pentamer per asu. For MAD
experiments, orthorhombic and monoclinic crystals were soaked in mother
liquor solution containing 5 mM and 10 mM trimethyl-lead acetate (MePb)
respectively for 5 days. Before flash-cooling, all crystals were
gradually equilibrated against mother liquor with 30% glycerol.
In all three space groups AChBP forms a decamer structure with 52
symmetry, where 2 pentamers have contact with each other through a
calcium-binding site, at the 'top' of the alpha 1 helix. This binding
site (Asp 2 and Asp 5 from two protomers) is not conserved in the
t/data/macroman/10963661.macroman view on Meta::CPAN
removed by DEAE anion exchange chromatography and gel filtration on a
Sephacryl S100 HR column, and the Fab was purified further by ion
exchange chromatography on a mono Q FPLC column by a NaCl gradient in
20 mM ethanolamine buffer at pH 9.3.
Crystals were grown at 4¡C by using the hanging-drop procedure in wells
containing 1 ml of 16% (vol/vol) polyethylene glycol 4000, 3% (vol/vol)
dioxan, 20% (vol/vol) glycerol, 0.2 M ammonium sulfate, 5 mM strontium
chloride, and 20 mM sodium acetate (final pH 5). Drops consisting of a
2-μl aliquot of a protein solution with hapten (0.25 mM hapten and 11.6
mg of Fab per ml in 0.15 M NaCl/0.05% NaN[3]) were mixed with 2 μl of
the well solution. Despite the simultaneous growth of thin needles and
polyhedral-shaped crystals, this procedure yielded, in some drops,
monocrystals of dimensions up to 0.7 × 0.45 × 0.35 mm^3.
¤3¤ X-Ray Data Collection and Structure Determination. ¤3¤
Diffraction data were recorded by using one crystal kept at 4¡C on the
W32 station of the Laboratoire pour l'Utilisation du Rayonnement
Electromagntique (Orsay, France) synchrotron with a MAR Image Plate
system. Data were processed with denzo and scalepack ([55]16), and
( run in 0.255 second using v1.01-cache-2.11-cpan-4d50c553e7e )