Bio-MUST-Drivers

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META.yml  view on Meta::CPAN

  Bio::MUST::Core::Seq: '0'
  Bio::MUST::Core::SeqId: '0'
  Bio::MUST::Core::Utils: '0'
  Carp: '0'
  Const::Fast: '0'
  Exporter::Easy: '0'
  File::Temp: '0'
  Getopt::Euclid: '0'
  IPC::System::Simple: '0'
  List::AllUtils: '0'
  Modern::Perl: '0'
  Module::Runtime: '0'
  Moose: '0'
  Moose::Role: '0'
  Path::Class: '0'
  Smart::Comments: '0'
  Test::Most: '0'
  Tie::IxHash: '0'
  aliased: '0'
  autodie: '0'
  experimental: '0'

Makefile.PL  view on Meta::CPAN

    "Bio::MUST::Core::Seq" => 0,
    "Bio::MUST::Core::SeqId" => 0,
    "Bio::MUST::Core::Utils" => 0,
    "Carp" => 0,
    "Const::Fast" => 0,
    "Exporter::Easy" => 0,
    "File::Temp" => 0,
    "Getopt::Euclid" => 0,
    "IPC::System::Simple" => 0,
    "List::AllUtils" => 0,
    "Modern::Perl" => 0,
    "Module::Runtime" => 0,
    "Moose" => 0,
    "Moose::Role" => 0,
    "Path::Class" => 0,
    "Smart::Comments" => 0,
    "Test::Most" => 0,
    "Tie::IxHash" => 0,
    "aliased" => 0,
    "autodie" => 0,
    "experimental" => 0,

Makefile.PL  view on Meta::CPAN

  "Bio::MUST::Core::Seq" => 0,
  "Bio::MUST::Core::SeqId" => 0,
  "Bio::MUST::Core::Utils" => 0,
  "Carp" => 0,
  "Const::Fast" => 0,
  "Exporter::Easy" => 0,
  "File::Temp" => 0,
  "Getopt::Euclid" => 0,
  "IPC::System::Simple" => 0,
  "List::AllUtils" => 0,
  "Modern::Perl" => 0,
  "Module::Runtime" => 0,
  "Moose" => 0,
  "Moose::Role" => 0,
  "Path::Class" => 0,
  "Smart::Comments" => 0,
  "Test::Files" => 0,
  "Test::Most" => 0,
  "Tie::IxHash" => 0,
  "aliased" => 0,
  "autodie" => 0,

bin/annotate-ali.pl  view on Meta::CPAN

#!/usr/bin/env perl
# PODNAME: annotate-ali.pl
# ABSTRACT: Annotate sequences by homology search using BLAST
# CONTRIBUTOR: Valerian LUPO <valerian.lupo@uliege.be>

use Modern::Perl '2011';
use autodie;

use Getopt::Euclid qw(:vars);
use Smart::Comments '###';

use Tie::IxHash;

use Bio::MUST::Core;
use Bio::MUST::Core::Utils qw(secure_outfile);
use Bio::MUST::Drivers;

lib/Bio/MUST/Provision/Blast.pm  view on Meta::CPAN

package Bio::MUST::Provision::Blast;
# ABSTRACT: Internal class for app provisioning system
$Bio::MUST::Provision::Blast::VERSION = '0.251060';
# AUTOGENERATED CODE! DO NOT MODIFY THIS FILE!

use Modern::Perl '2011';
use Carp;

use parent qw(App::Provision::Tiny);


sub deps { return qw(brew) }

sub condition {
    my $self = shift;

lib/Bio/MUST/Provision/Cap3.pm  view on Meta::CPAN

package Bio::MUST::Provision::Cap3;
# ABSTRACT: Internal class for app provisioning system
$Bio::MUST::Provision::Cap3::VERSION = '0.251060';
# AUTOGENERATED CODE! DO NOT MODIFY THIS FILE!

use Modern::Perl '2011';
use Carp;

use parent qw(App::Provision::Tiny);


sub deps { return qw(brew) }

sub condition {
    my $self = shift;

lib/Bio/MUST/Provision/CdHit.pm  view on Meta::CPAN

package Bio::MUST::Provision::CdHit;
# ABSTRACT: Internal class for app provisioning system
$Bio::MUST::Provision::CdHit::VERSION = '0.251060';
# AUTOGENERATED CODE! DO NOT MODIFY THIS FILE!

use Modern::Perl '2011';
use Carp;

use parent qw(App::Provision::Tiny);


sub deps { return qw(brew) }

sub condition {
    my $self = shift;

lib/Bio/MUST/Provision/ClustalO.pm  view on Meta::CPAN

package Bio::MUST::Provision::ClustalO;
# ABSTRACT: Internal class for app provisioning system
$Bio::MUST::Provision::ClustalO::VERSION = '0.251060';
# AUTOGENERATED CODE! DO NOT MODIFY THIS FILE!

use Modern::Perl '2011';
use Carp;

use parent qw(App::Provision::Tiny);


sub deps { return qw(brew) }

sub condition {
    my $self = shift;

lib/Bio/MUST/Provision/Exonerate.pm  view on Meta::CPAN

package Bio::MUST::Provision::Exonerate;
# ABSTRACT: Internal class for app provisioning system
$Bio::MUST::Provision::Exonerate::VERSION = '0.251060';
# AUTOGENERATED CODE! DO NOT MODIFY THIS FILE!

use Modern::Perl '2011';
use Carp;

use parent qw(App::Provision::Tiny);


sub deps { return qw(brew) }

sub condition {
    my $self = shift;

lib/Bio/MUST/Provision/Hmmer.pm  view on Meta::CPAN

package Bio::MUST::Provision::Hmmer;
# ABSTRACT: Internal class for app provisioning system
$Bio::MUST::Provision::Hmmer::VERSION = '0.251060';
# AUTOGENERATED CODE! DO NOT MODIFY THIS FILE!

use Modern::Perl '2011';
use Carp;

use parent qw(App::Provision::Tiny);


sub deps { return qw(brew) }

sub condition {
    my $self = shift;

lib/Bio/MUST/Provision/Mafft.pm  view on Meta::CPAN

package Bio::MUST::Provision::Mafft;
# ABSTRACT: Internal class for app provisioning system
$Bio::MUST::Provision::Mafft::VERSION = '0.251060';
# AUTOGENERATED CODE! DO NOT MODIFY THIS FILE!

use Modern::Perl '2011';
use Carp;

use parent qw(App::Provision::Tiny);


sub deps { return qw(brew) }

sub condition {
    my $self = shift;